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ID 6302
Class Mammalia
Species Mouse
Tissue Gut
Sample Organoids
Disease type Normal
Cell type Epithelial cells
Cell type (subtype) Epithelial cells
Cell marker Elof1, Chchd10, Ift172, 1700016K19Rik, Cfap126, Tppp3, Ccdc153, 1700088E04Rik, Tmem212, Pifo, Mlf1, Meig1, Lrrc51, 1700007K13Rik, Fam183b, Tmem107, Ift43, Ccdc189, Rsph1, Arhgdig, 1110004E09Rik, Prr29, Tctex1d4, Cfap206, Spef1, 2410004P03Rik, AU040972, Bo
Frequency
PubMed ID 30872643
Journal Sci Rep
SCI IF 3.998
Evidence Table S2.Fibroblast specific genes, such as Col1A1, Bgn, Dcn22, were significantly expressed in the cluster 1, while epithelial specific markers, such as Epcam, Krt7 and Krt1413, were significantly expressed in cluster 2.Fig.2b.Fig.3c.Differentially expressed genes included well-known lineage specific markers, i.e. upregulation of Col1a1 and Grem1 in fibroblast cells as well as upregulation of Krt6a and Cdh1 in epithelial cells.Fig.S8a
Title Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model
Authors Jiamin Chen et al.
Date 2019.3
Data available SRP104455