Search | Result
| ID | 4858 |
|---|---|
| Class | Mammalia |
| Species | Mouse |
| Tissue | Blood |
| Sample | Blood |
| Disease type | NA |
| Cell type | Monocytes |
| Cell type (subtype) | Monocytes |
| Cell marker | Csf1r, Irf8, Ctsg |
| Frequency | |
| PubMed ID | 30890159 |
| Journal | Genome Biology |
| SCI IF | 10.806 |
| Evidence | changes across all datasets—we observe changes of erythroid maturity marker genes (Gata2, Gata1, Klf1, Epor, and Hba-a2) along the erythroid trajectory through the PAGA graphs and observe sequential activation of these genes in agreement with known behavior. Acti-vation of neutrophil markers (Elane, Cepbe, and Gfi1) and monocyte markers (Irf8, Csf1r, and Ctsg) are seen towards the end of the neutrophil and monocyte trajectories, respectively |
| Title | GAPA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells |
| Authors | F. Alexander Wolf et al. |
| Date | 2019 |
| Data available | NA |
