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ID 4291
Class Mammalia
Species Homo sapiens
Tissue Skin
Sample Tissue
Disease type Substantia Nigra
Cell type Astrocytes
Cell type (subtype) Astrocytes
Cell marker GFAP
Frequency
PubMed ID 32826893
Journal Nat Commun
SCI IF 12.121
Evidence We identified ten distinct cell populations across all samples within the SN (Fig. 1a, Supplementary Fig. 1, Supplementary Note 1), which included (i) astrocytes (GFAP) with two subtypes: astrocyte-1 population expressing neuroinflammatory genes (OLR2) and an astrocyte-2 (GINS3) population expressing genes associated with growth and reparative functionsï¼›(ii) oligodendrocytes (ODCs) (MOG, MOBP) with three subtypes discriminated by oligodendrocyte marker genes PALM2, LGALS1 & PPM1G, (iii) Endothelial cellss (RGS5), (iv) microglia cells (CSF1R), (v) oligodendrocyte precursor cells(OPCs) (VCAN), (vi) DaNs (TH and SLC6A3), neuronal population of the SN pars compacta (Supplementary Fig. 2) and(vii) GABAergic neurons, neuronal population of the SN pars reticulata expressing gamma-aminobutyric acid (GABA) receptors GABRA1 and GABRB2 and the enzymes GAD1 and GAD2 required for GABA neurotransmitter synthesis (Fig. 1a, c, Supplementary Data 2 and 3, Supplementary Fig. 2)
Title A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders
Authors Devika Agarwal et al.
Date 2020.8
Data available GSE140231