entry_id	kingdom	phylum	class	order	family	genus	species	cell_type	gene_symbol	cell_subtype	sample_type	tissue_type	pubmed_id	journal	title	geo_id
1	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Cartilage	"matn4, col9a2"	Cartilage	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
2	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Dorsolateral	nptx2a	Dorsolateral	Tissue	Brain	29576475	Current Biology	Comprehensive Identifification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA_x0002_Seq	GSE105115
3	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Dorsomedial	"gpr151, pou4f1"	Dorsomedial	Tissue	Brain	29576475	Current Biology	Comprehensive Identifification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA_x0002_Seq	GSE105115
4	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epidermal cells	"epcam, cldni"	Epidermal cells	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
5	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Eye cells	"foxg1b, lim2.4, pmela, ca14, gnat1, opn1mw1"	Eye cells	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
6	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Pharyngeal arches	"pmp22a, prrx1b, barx1"	Pharyngeal arches	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
7	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Sensory placodes	"dlx3b, six1b"	Sensory placodes	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
8	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Trigeminal ganglia	"ptgs2a, tp63, cavin2a"	Trigeminal ganglia	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
9	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Ventral	aoc1	Ventral	Tissue	Brain	29576475	Current Biology	Comprehensive Identifification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA_x0002_Seq	GSE105115
10	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Blood cells	"cahz, etv2, cd74a"	Blood cells	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
11	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Hoxa2b, Cyp26b1"	Neural cells c0	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
12	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Zic1, Atoh1a"	Neural cells c0	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
13	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Ihx9, Barh1"	Neural cells c0	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
14	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Zic1, Msx1b"	Neural cells c1	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
15	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Mki67, Ibx1b"	Neural cells c1	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
16	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Fzd7a, Gfap"	Neural cells c1	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
17	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Tfap2a	Neural cells c10	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
18	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Tfap2b	Neural cells c10	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
19	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Atoh1b	Neural cells c11	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
20	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Phoxa2a	Neural cells c11	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
21	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Vsx1, Tal1"	Neural cells c12	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
22	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Isl1	Neural cells c12	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
23	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Shha	Neural cells c13	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
24	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Foxa	Neural cells c13	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
25	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Bmp5, Nog1"	Neural cells c14	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
26	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Foxn4, Vsx1"	Neural cells c14	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
27	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Slca3b	Neural cells c15	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
28	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Hoxd4a, Cygb1"	Neural cells c2	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
29	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Dbx1a	Neural cells c2	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
30	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Mki67, Nusap1"	Neural cells c2	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
31	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Egr2b, Epha4a, Mafba"	Neural cells c3	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
32	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Mcm2	Neural cells c3	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
33	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Otpa, Pax2a"	Neural cells c3	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
34	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Cryba1l1, Prdx6"	Neural cells c4	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
35	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Neurog1, Neurogd4, Otpb"	Neural cells c4	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
36	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Ascl1a, Zic1"	Neural cells c4	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
37	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Rbp5	Neural cells c5	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
38	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Myca	Neural cells c5	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
39	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Gata2a, Tal1"	Neural cells c5	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
40	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Neurod4, Elavl3"	Neural cells c6	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
41	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Elavl4, Gap43"	Neural cells c6	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
42	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Rbfox1, Stmn2a"	Neural cells c6	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
43	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"En2a, Pax2a"	Neural cells c7	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
44	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Cdca8	Neural cells c7	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
45	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Dla	Neural cells c7	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
46	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Bmp5, Nog1"	Neural cells c8	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
47	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Slc6a9	Neural cells c8	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
48	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Ascl1b.1, Neurog1, Neurod4"	Neural cells c8	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
49	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Shha, Foxa"	Neural cells c9	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
50	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Nkx2.2a, Isl1"	Neural cells c9	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
51	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Atoh1a	Neural cells c9	Tissue	Brain	32094115	Development	A single cell transcriptome atlas of the developing zebrafish hindbrain	GSE141428
52	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glial cells	"Gfap, Her4"	Glial cells	Tissue	Brain	31905199	PLoS Biol	Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer model of adult zebrafish brain	"GSM3334110, GSM3333461, GSM3333764, GSM3334111"
53	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Immune cells	"Pfn1, Lcp1"	Immune cells	Tissue	Brain	31905199	PLoS Biol	Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer model of adult zebrafish brain	"GSM3334110, GSM3333461, GSM3333764, GSM3334111"
54	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Sypb, Gap43"	Neurons	Tissue	Brain	31905199	PLoS Biol	Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer model of adult zebrafish brain	"GSM3334110, GSM3333461, GSM3333764, GSM3334111"
55	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Oligodendrocytes	"Olig2, Aplnrb"	Oligodendrocytes	Tissue	Brain	31905199	PLoS Biol	Neuron-glia interaction through Serotonin-BDNF-NGFR axis enables regenerative neurogenesis in Alzheimer model of adult zebrafish brain	"GSM3334110, GSM3333461, GSM3333764, GSM3334111"
56	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	sox10	Neural crest cells	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
57	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	sox19a	Neural progenitors	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
58	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"elavl3, gad2, slc17a6b"	Neuronal cells	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
59	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Progenitor cells	"sox19a, her genes, pcna, mki67, fabp7a, gfap, id1"	Progenitor cells	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
60	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glia cells	"mfge8a, s100b"	Radial glia cells	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
61	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Oligodendrocytes	mbpa	Oligodendrocytes	Tissue	Brain	33068532	Neuron	Emergence of Neuronal Diversity during Vertebrate Brain Development.	GSE158142
62	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Hematopoietic cells	"mpeg1.1, cxcr3.2"	Hematopoietic cells	Tissue	Caudal fin	32851162	Sci Adv	Cellular diversity of the regenerating caudal fin	GSE137971
63	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epithelial cells	"epcam, cdh1, krt4"	Superficial epithelium	Tissue	Caudal fin	32851162	Sci Adv	Cellular diversity of the regenerating caudal fin	GSE137971
64	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epithelial cells	"epcam, cdh1, tp63"	Intermediate epithelium	Tissue	Caudal fin	32851162	Sci Adv	Cellular diversity of the regenerating caudal fin	GSE137971
65	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epithelial cells	"epcam, cdh1, tp63, krtt1c19e"	Basal layers epithelium	Tissue	Caudal fin	32851162	Sci Adv	Cellular diversity of the regenerating caudal fin	GSE137971
66	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Mesenchymal cells	"msx1b, twist1a"	Mesenchymal cells	Tissue	Caudal fin	32851162	Sci Adv	Cellular diversity of the regenerating caudal fin	GSE137971
67	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Cartilage	"Mia, Matn1, Col2a1a, Fgfbp2"	Cartilage	Tissue	Embryos	32831172	eLife	An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes	GSE152759
68	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epidermis	"And1, And2, Msx2b"	Epidermis	Tissue	Embryos	32831172	eLife	An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes	GSE152759
69	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural progeny	"Ngfrb, Zwi, Elavl3"	Neural progeny	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
70	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Notochord cells	"Tbxta, Col2a1a, Col9a2, Matn4"	Notochord cells	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
71	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Notochord cells	"Tbxta, Col2a1a, Col9a2, Matn4"	Notochord cells	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
72	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Notochord cells	"Tbxta, Col2a1a, Col9a2, Matn4"	Notochord cells	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
73	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Photoreceptors	"Grk1a, Opn1lw2"	Photoreceptors	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
74	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Germ cells	"Ddx4, Nanos3, Dnd1, Piwi2"	Primordial germ cells	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
75	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epithelial cell	Cx43	Retina pigment epithelium	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
76	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Xanthophores	"Cax1, Plin6, Aox5"	Xanthophores	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
77	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Blood cells	"Coro1a, Rac2"	Blood cells	Tissue	Embryos	32831172	eLife	An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes	GSE152759
78	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Blood cells	"Coro1a, Rac2"	Blood cells	Tissue	Embryos	32831172	eLife	An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes	GSE152759
79	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Differentiated cells	"Crx, Neurod1, Otx2b, Foxn4, Hes2.2, Ntoh7"	Differentiating retinal cells	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
80	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Hepatocytes	"Fabp10a, cp1"	Hepatocytes	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
81	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Pcna, Hoxc1a, Hoxb9a, Hoxc8a, Hoxb8a, Hoxc6b"	Spinal cord neural cells	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
82	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Pcna, Sox1, Foxg1a"	Forebrain	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
83	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Pcna, Otx2a, En2b"	Midbrain	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
84	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Pcna, Olig2, Isl2a, Isl1, Mnx1"	Motor neurons	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
85	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Pcna, Pcna, Fabp7a"	Progenitor	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
86	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Pcna, Elavl3, Snap25a"	Differentiated neural	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
87	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Lin7a, Alcama, Barhl2"	Retinal neurons	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
88	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Melanocytes	"Slc24a5, Tyr"	Melanocytes	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
89	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	"Crestin, Ednrab, Sox10"	Neural crest progenitors	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
90	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Progenitor cells	"Vsx2, Col15a1b"	Retinal progenitor cells	Tissue	Embryos	31782996	Dev Biol	A single-cell transcriptome atlas for zebrafish development	PRJNA564810
91	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Lymphocyte cells	"il7r, lck"	Lymphocytes	Tissue	Gut	30446505	Sci Immunol	Single-cell transcriptional analysis reveals ILC-like cells in zebrafish	NA
92	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	T cells	"cd3z, trac"	T cells	Tissue	Gut	30446505	Sci Immunol	Single-cell transcriptional analysis reveals ILC-like cells in zebrafish	NA
93	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Central support cells	"Lfng, Ebf3a, Isl1, Gata2b, Prox1a"	Central support cells	Tissue	Hair	30681411	eLife	scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling	GSE123241
94	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	D_v pole amplifying support cells	Sost	D_v pole amplifying support cells	Tissue	Hair	30681411	eLife	scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling	GSE123241
95	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Mantle cells	"Ovgp1, Sfrp1a, Tspan1"	Mantle cells	Tissue	Hair	30681411	eLife	scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling	GSE123241
96	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Support cells	"Si:ch73-261i21.5, Wnt11r"	Support cells	Tissue	Hair	30681411	eLife	scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling	GSE123241
97	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Hair cells	"Dld, Sox4a, Hes2.2"	Differentiating hair cell progenitors	Tissue	Hair	30681411	eLife	scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling	GSE123241
98	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Hair cells	"Atoh1a, Tekt3, Rbm24a, Tmc2b, Irx2a, Myt1a"	Hair cells	Tissue	Hair	30681411	eLife	scRNA-Seq reveals distinct stem cell populations that drive hair cell regeneration after loss of Fgf and Notch signaling	GSE123241
99	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Secretory cells	"Anxa4, Neurod1"	Enteroendocrine	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
100	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Sperm cells	Spag6	Sperm cells	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
101	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Hepatocytes	Fabp10a	Hepatocytes	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
102	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Enterocytes	Fabp2	Enterocytes	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
103	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	T cells	"Il7r, Lck, Zap70"	T cells	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
104	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	B cells	Blnk	B cells	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
105	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Goblet cells	Agr2	Goblet cells	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
106	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neutrophils	Mpx	Neutrophils	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
107	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Phagocytes	"Cxcr3.2, Ncf4, Mpeg1.1, Tnfa"	M1	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
108	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Phagocytes	"Cxcr3.2, Ncf4, Mpeg1.1 , Marco"	M2	Tissue	Intestine	32092251	Environ Sci Technol	Single-cell RNA sequencing reveals size-dependent effects of polystyrene microplastics on immune and secretory cell populations from zebrafish intestines	GSE136109
109	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Iridophore	"Pnp4a, Gpnmb"	Iridophore	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
110	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Melanophores	"Tyrp1b, Dct"	Melanophores	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
111	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Scp	"Pou3f1, Negr1"	Scp	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
112	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Xanthophores	"Aox5, Bscl2l"	Xanthophores	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
113	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Chromaffin cells	"Dbh, Elavl3"	Chromaffin cells	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
114	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Elavl3	Neuronal cells	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
115	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Progenitor cells	"Tfec, Crestin"	Pigment progenitor	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
116	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Progenitor cells	Pcna	Proliferating progenitors	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
117	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glial cells	Gfap	Satellite glial cells	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
118	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Schwann cells	"Mbpa, Fstl3"	Schwann cells	Cell line	Neural crest	31140974	eLife	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages	GSE131136
119	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Hair cells	"Pvalb8, S100t, S100s, Tekt3, Tmc2b"	Mature hair cells	Tissue	Neuromast	32109392	Curr Biol	Epithelial Planar Bipolarity Emerges from Notch-Mediated Asymmetric Inhibition of Emx2	"GSE143663, GSE144827"
120	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Non-sensory supporting cells	"Sost, Klf17, Stm, Si:dkey-205h13.2"	Non-sensory supporting cells	Tissue	Neuromast	32109392	Curr Biol	Epithelial Planar Bipolarity Emerges from Notch-Mediated Asymmetric Inhibition of Emx2	"GSE143663, GSE144827"
121	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Uhcps and immature hair cells	"Atoh1a, Dld"	UHCPs and immature hair cells	Tissue	Neuromast	32109392	Curr Biol	Epithelial Planar Bipolarity Emerges from Notch-Mediated Asymmetric Inhibition of Emx2	"GSE143663, GSE144827"
122	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Hair cells	Myo6b	Immature and mature hair cells	Tissue	Neuromast	32109392	Curr Biol	Epithelial Planar Bipolarity Emerges from Notch-Mediated Asymmetric Inhibition of Emx2	"GSE143663, GSE144827"
123	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Ch	"sox6, sox9a, col2a1a, col9a1a"	Ch	Tissue	Olfactory bulb	32379366	J Bone Miner Res	Fgfr3 Is a Positive Regulator of Osteoblast Expansion and Differentiation During Zebrafish Skull Vault Development.	NA
124	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Ob	"spp1, bglap, phex, col10a1a, sp7"	Ob	Tissue	Olfactory bulb	32379366	J Bone Miner Res	Fgfr3 Is a Positive Regulator of Osteoblast Expansion and Differentiation During Zebrafish Skull Vault Development.	NA
125	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Op2	"pcna, cdk1, mki67"	Op2	Tissue	Olfactory bulb	32379366	J Bone Miner Res	Fgfr3 Is a Positive Regulator of Osteoblast Expansion and Differentiation During Zebrafish Skull Vault Development.	NA
126	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Osteoblasts	"sp7, spp1, bglap"	Osteoblasts	Tissue	Olfactory bulb	32379366	J Bone Miner Res	Fgfr3 Is a Positive Regulator of Osteoblast Expansion and Differentiation During Zebrafish Skull Vault Development.	NA
127	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glia cells	mfge8a	DRG(dormant RG)	Tissue	Optic tecta	31442201	eLife	Stochastic cell-cycle entry and cell-state- dependent fate outputs of injury- reactivated tectal radial glia in zebrafish	NA
128	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glia cells	vim	RRG(relative RG)	Tissue	Optic tecta	31442201	eLife	Stochastic cell-cycle entry and cell-state- dependent fate outputs of injury- reactivated tectal radial glia in zebrafish	NA
129	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glia cells	"mcm2, pcna"	PRG-S(proliferative RG-S)	Tissue	Optic tecta	31442201	eLife	Stochastic cell-cycle entry and cell-state- dependent fate outputs of injury- reactivated tectal radial glia in zebrafish	NA
130	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glia cells	"cdk1, nusap1"	PRG-G2(proliferative RG-G2	Tissue	Optic tecta	31442201	eLife	Stochastic cell-cycle entry and cell-state- dependent fate outputs of injury- reactivated tectal radial glia in zebrafish	NA
131	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epithelial cell	Agrp2	Retinal-pigment epithelium like	Tissue	Pineal Gland	31178320	Curr Biol	Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System	GSE123778
132	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Rod-like photoreceptors	"Exorh, Gnat1, Gngt1"	Rod-like photoreceptors	Tissue	Pineal Gland	31178320	Curr Biol	Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System	GSE123778
133	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Cones	"Gnat2, Gngt2A, Gnb3B, Opn1Lw1"	Cone-like photoreceptors	Tissue	Pineal Gland	31178320	Curr Biol	Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System	GSE123778
134	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Myeloid cells	"Apoeb, Cd74A"	Macrophages/microglia	Tissue	Pineal Gland	31178320	Curr Biol	Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System	GSE123778
135	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neural cells	Elavl4	Neurons	Tissue	Pineal Gland	31178320	Curr Biol	Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System	GSE123778
136	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Muller cells	"Clu, Vim, Dkk3B"	Muller glia-like cells	Tissue	Pineal Gland	31178320	Curr Biol	Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System	GSE123778
137	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Gabaergic acs	"Gad2, Slc6a1a, Slc6a1b, Slc32a1, Cdkn1ca, Cdkn1cb"	Gabaergic acs	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
138	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glycinergic acs	"Slc6a9, Slc6a5"	Glycinergic acs	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
139	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Neurogenic cells	"Atoh7, Btg2, Gadd45aa, Gadd45ab, Gadd45ga, Foxn4"	Neurogenicrpcs	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
140	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Primary prcs	"Ccnd2a, Ccnd2b"	Primary prcs	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
141	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Ganglion cells	"Sncga, Sncgb, Thy1, Ebf3a, Rbfox3a, Rbfox3b, Isl2a, Isl2b, Pou4f1, Pou4f2, Pou4f3, Rbpms"	Retinal ganglion cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
142	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Epithelial cell	"Rpe65a, Rpe65b, Rpe65c, Pmela, Pmelb, Best1, Lrata, Lratb, Tyr"	Retina pigment epithelium	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
143	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Stem cells	Col15a1b	Retinal stem cells	Tissue	Retina	32467236	Development	Unifying developmental programs for embryonic and postembryonic neurogenesis in the zebrafish retina	GSE122680
144	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Rods	"Rho, Nrl, Otx2, Crx, Guca1b, Rom1a, Rom1b, Gnat1"	Rods	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
145	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Rpc a	"Her6, Id1, Her12"	Rpc a	Tissue	Retina	32699896	J Cell Biol	Different lineage contexts direct common pro-neural factors to specify distinct retinal cell subtypes	GSE150839
146	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Rpc b	"Atoh7, Onecut1, Myca, Pou2f2a"	Rpc b	Tissue	Retina	32699896	J Cell Biol	Different lineage contexts direct common pro-neural factors to specify distinct retinal cell subtypes	GSE150839
147	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Rpc c	"Atoh7, Tfap2d, Pou3f1, Olig2, Vsx1, Neurog1"	Rpc c	Tissue	Retina	32699896	J Cell Biol	Different lineage contexts direct common pro-neural factors to specify distinct retinal cell subtypes	GSE150839
148	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Rpc d	CrxScrt2	Rpc d	Tissue	Retina	32699896	J Cell Biol	Different lineage contexts direct common pro-neural factors to specify distinct retinal cell subtypes	GSE150839
149	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Bipolar cells	"Bhlhe23, Cabp5a, Cabp5b, Vsx2"	Bipolar cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
150	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Cones	"Opn1mw1, Opn1mw2, Opn1mw3, Opn1mw4, Opn1sw1, Opn1sw2, Arr3a, Thrb, Arr3b, Cnga3b, Cnga3a"	Cones	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
151	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Horizontal cells	"Lhx1a, Cbln4, Calb1, Onecut2, Lhx1b, Onecut1"	Horizontal cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
152	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Muller cells	"Rlbp1a, Rlbp1b, Glula, Glulb, Glulc, Apoea, Apoeb, Her6, Notch1a, Notch1b, Aqp4, Prdx6, Vim, Kcnj10a"	Muller cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
153	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Muller cells	Rlbp1a	Muller glia cells	Tissue	Retina	32467236	Development	Unifying developmental programs for embryonic and postembryonic neurogenesis in the zebrafish retina	GSE122680
154	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Pericytes	"Kcnj8, Acta2, Pdgfrb"	Pericytes	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
155	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Progenitor cells	"Fabp11a, Npm1a, Her9, Col15a1b"	Primitive retinal progenitor cells	Tissue	Retina	32467236	Development	Unifying developmental programs for embryonic and postembryonic neurogenesis in the zebrafish retina	GSE122680
156	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Glia cells	Fabp7a	Radial glia cells	Tissue	Retina	32467236	Development	Unifying developmental programs for embryonic and postembryonic neurogenesis in the zebrafish retina	GSE122680
157	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Progenitor cells	Cdk4	Retinal progenitor cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
158	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Amacrine cells	"Tfap2b, Prox1a, Calb2a, Calb2b, Elavl3"	Amacrine cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
159	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Astrocytes	"Pax2a, Pax2b, Igf2a, Igf2b, S100b"	Astrocytes	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
160	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Microglia cells	"Ptprc, Csf2rb, Tmem119b, Tmem119a"	Microglia cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
161	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Oligodendrocytes	"Olig1, Olig2, Mbpa, Mbpb"	Oligodendrocytes	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
162	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Endothelial cells	"Cdh5, Tie1, Tek"	Vascular/endothelial cells	Tissue	Retina	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
163	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Myocardial	MF20	Myocardial	Tissue	Ventricle	32341028	Development	Runx1 promotes scar deposition and inhibits myocardial proliferation and survival during zebrafish heart regeneration	GSE138181
164	Animalia	Chordata	Actinopterygii	Cypriniformes	Cyprinidae	Danio	Danio rerio	Proliferating cells	"Mef2, PC"	Proliferation myocardial	Tissue	Ventricle	32341028	Development	Runx1 promotes scar deposition and inhibits myocardial proliferation and survival during zebrafish heart regeneration	GSE138181
165	Animalia	Chordata	Actinopterygii	Cyprinodontiformes	Adrianichthyidae	Oryzias	Medaka fish	Stem cells	Rx2	Retinal stem cells	Tissue	Retina	32467236	Development	Unifying developmental programs for embryonic and postembryonic neurogenesis in the zebrafish retina	GSE122680
166	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Cluster 5	"Lyz, Apoe"	Cluster 5	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
167	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Cluster 6	Apoe	Cluster 6	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
168	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Cluster 7	Gzmb	Cluster 7	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
169	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Cluster 8	Trac	Cluster 8	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
170	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Ct cells	Tnmd	Tenocytes	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
171	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Ct cells	Col8a2	Periskeletal cells	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
172	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Ct cells	Ccnb1	Actively cycling cells	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
173	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Epidermal cells	Krt5	Epidermal cells	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
174	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Endothelial cells	Mmrn1	Endothelial cells	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
175	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Erythrocytes	Hbb	Erythrocytes	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
176	Animalia	Chordata	Amphibia	Caudata	Ambystomatidae	Ambystoma	Ambystoma mexicanum	Muscle cells	Myl10	Muscle cells	Tissue	Limb	30262634	Science	Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.	GSE106269
177	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Beta ionocyte	Slc4a9.L	Beta ionocyte	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
178	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Epidermis	Lox.L	Epidermis	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
179	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Ionocytes	Slc4a1.L	Alpha ionocytes	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
180	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Larninin-rich epidermis	"Mmp11.L, Lamc2.L"	Larninin-rich epidermis	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
181	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Melanocyte precursors	Pax7.S	Melanocyte precursors	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
182	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Stem cells	Tbx2.L	Melanocyte stem cells	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
183	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Secretory cells	"Foxa1.L, Otog.S"	Small secretory cell	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
184	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Goblet cells	"Gjb1.L, Itln1.L"	Goblet cells	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
185	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Melanocytes	"Tyr.S, Dct.L"	Melanocytes	Tissue	Skin	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
186	Animalia	Chordata	Amphibia	Anura	Pipidae	Xenopus	Xenopus laevis	Regenerating cells	"Fgf7, Msx2, C3, Wnt3a"	Regeneration-organizing cell	Tissue	Tails	31097661	Science	Identification of a regeneration-organizing cell in the Xenopus tail	NA
187	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Dorsolateral brain cells	"Syt1, Celf3, Celf4, Celf5, R1bp1"	Dorsolateral brain cells	Tissue	Brain	30392840	Dev Biol	Single-cell transcriptome profiling of the Ciona larval brain	GSE121807
188	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Vesicle cells	"Aqp8, Zeb, Gnrb.b, C10.493"	Sensory/brain vesicle wall cells	Tissue	Brain	30392840	Dev Biol	Single-cell transcriptome profiling of the Ciona larval brain	GSE121807
189	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Ventral brain cells	"Ptf1a, Gch1, Pde9a, Gucy-r"	Ventral brain cells	Tissue	Brain	30392840	Dev Biol	Single-cell transcriptome profiling of the Ciona larval brain	GSE121807
190	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Palp sensory cells (pscs)	"Islet, SP8, Foxg"	Palp sensory cells (pscs)	Tissue	Embryos	30069052	Nature	Shared evolutionary origin of vertebrate neural crest and cranial placodes	GSE115331
191	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Neural cells	"Asic1b, synaphin"	Bipolar tail neurons	Tissue	Embryos	30069052	Nature	Shared evolutionary origin of vertebrate neural crest and cranial placodes	GSE115331
192	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Coronet cells	"Ptf1a, Meis"	Coronet cells	Tissue	Notochord	31292549	Nature	Comprehensive single-cell transcriptome lineages of a proto-vertebrate	GSE131155
193	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Embryo	"H2B_mAp, PH-nG"	Embryo	Tissue	Notochord	31292549	Nature	Comprehensive single-cell transcriptome lineages of a proto-vertebrate	GSE131155
194	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Secondary notochord	"Otx, Not, Tbx6a, Tbx6c, Tbx6d"	Secondary notochord	Tissue	Notochord	31292549	Nature	Comprehensive single-cell transcriptome lineages of a proto-vertebrate	GSE131155
195	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Neural cells	"GABAergic, Prop"	Eminens neurons	Tissue	Notochord	31292549	Nature	Comprehensive single-cell transcriptome lineages of a proto-vertebrate	GSE131155
196	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Muscle cells	"Casq1, Casq2, Mlra, Mlrv, Myl5, Tpm1, Tpm2, Tpm3"	Muscle cells	Tissue	Notochord	31292549	Nature	Comprehensive single-cell transcriptome lineages of a proto-vertebrate	GSE131155
197	Animalia	Phylum Chordata	Ascidiacea	Phlebobranchia	Cionidae	Ciona	Intestinalis	Neural cells	"TH, GCH, AADC, AADC, GCH, SERT, Ptf1a"	Coronet cells	Tissue	Sperm	30228204	Genes Dev	Regulatory cocktail for dopaminergic neurons in a protovertebrate identified by whole-embryo single-cell transcriptomics.	GSE120035
198	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Fetal leydig cells	"Cyp17A1, Star"	Fetal leydig cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
199	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Ovarian cortex cells	"Krt7, Krt18, Krt19"	Ovarian cortex cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
200	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Granulosa cells	"Foxl2, Cyp19A1, Fgfr3"	Pre-granulosa cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
201	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Germ cells	"Dazl, Ddx4, Cldn1"	Germ cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
202	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Interstitial cells	"Col3A1, Col1A2, Postn, Dcn, Acta2"	Interstitial cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
203	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Endothelial cells	"Sox18, Cdh5"	Endothelial cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
204	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Epithelial cells	"Krt7, Krt18, Pitx2"	Epithelial cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
205	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Podocytes	"Nphs2, Podxl"	Podocytes	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
206	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Sertoli cells	"Amh, Sox9, Hemgn, Dmrt1"	Sertoli cells	Tissue	Gonad	32268081	Cell Rep	Insights into Gonadal Sex Differentiation Provided by Single-Cell Transcriptomics in the Chicken Embryo	NA
207	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Limb cells	PRRX1	Limb mesenchyme	Tissue	Limb	31117954	BMC Genomics	A single-cell transcriptomic atlas of the developing chicken limb	GSE130439
208	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Limb cells	PRRX1	Limb mesenchyme	Tissue	Limb	31117954	BMC Genomics	A single-cell transcriptomic atlas of the developing chicken limb	GSE130439
209	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Synovial joint	GDF5	Synovial joint	Tissue	Limb	31117954	BMC Genomics	A single-cell transcriptomic atlas of the developing chicken limb	GSE130439
210	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Synovial joint	GDF5	Synovial joint	Tissue	Limb	31117954	BMC Genomics	A single-cell transcriptomic atlas of the developing chicken limb	GSE130439
211	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Apical ectodermal ridge cells	FGF8	Apical ectodermal ridge cells	Tissue	Limb	31117954	BMC Genomics	A single-cell transcriptomic atlas of the developing chicken limb	GSE130439
212	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Apical ectodermal ridge cells	FGF8	Apical ectodermal ridge cells	Tissue	Limb	31117954	BMC Genomics	A single-cell transcriptomic atlas of the developing chicken limb	GSE130439
213	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Glycinergic acs	"SLC6A9, SLC6A5"	Glycinergic acs	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
214	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Neurogenic cells	"GADD45A, BTG2, GADD45G, NEUROG2, ATOH7, FOXN4"	Neurogenicrpcs	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
215	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Primary prcs	CCND2	Primary prcs	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
216	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Reticulocytes	HBA1	Reticulocytes	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
217	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Ganglion cells	"SNCG, THY1, EBF3, RBFOX3, ISL2, POU4F1, POU4F2, POU4F3, RBPMS, POU4F3, POU4F3"	Retinal ganglion cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
218	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Epithelial cell	"RPE65, PMEL, BEST1, LRAT, TYR"	Retina pigment epithelium	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
219	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Rods	"RHO, OTX2, GUCA1B, ROM1, GNAT1"	Rods	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
220	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Bipolar cells	"BHLHE23, CABP1, VSX2"	Bipolar cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
221	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Horizontal cells	"LHX1, CBLN4, CALB1, ONECUT2, ONECUT1"	Horizontal cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
222	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Muller cells	"RLBP1, GLUL, HES1, NOTCH1, AQP4, PRDX6, ABCA8, VIM, ALDH1A1, KCNJ10"	Muller cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
223	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Glial cells	"PTPRZ1, SPARC, SIX6, TGFB2, PMP2, S100A6"	Non-astrocytic inner retinal glial cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
224	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Pericytes	"KCNJ8, ACTA2, PDGFRB"	Pericytes	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
225	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Amacrine cells	"TFAP2B, PROX1, CALB2"	Amacrine cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
226	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Oligodendrocytes	"MOG, OLIG2, TGFB3, FGFR2, UGT8, TMEM88B, ENPP2, MBP"	Oligodendrocytes	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
227	Animalia	Chordata	Aves	Galliformes	Phasianidae	Gallus	Chicken	Endothelial cells	"CDH5, TIE1, TEK, CD34"	Vascular/endothelial cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
228	Animalia	Annelida	Chaetopoda	Opisthopora	Lumbricidae	Lumbricus	Lumbricus terrestris	Pluripotency cells	"SOX2, ACTB, OCT4, NANOG"	Pluripotent stem cells	Tissue	Brain	32461609	Nat Commun	Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration	PRJNA541363
229	Animalia	Annelida	Chaetopoda	Opisthopora	Lumbricidae	Lumbricus	Lumbricus terrestris	Muscle cells	"TPM44, UNC-89"	Muscle cells	Tissue	Brain	32461609	Nat Commun	Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration	PRJNA541363
230	Animalia	Annelida	Chaetopoda	Opisthopora	Lumbricidae	Lumbricus	Lumbricus terrestris	Neural cells	"NF70, NBAS, AHNAK"	Neurons	Tissue	Brain	32461609	Nat Commun	Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration	PRJNA541363
231	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Chiasm glia cells	"hoe1, wrapper"	Chiasm glia cells	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
232	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Surface glia cells	"CG6126, Indy"	Surface glia cells	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
233	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	"T4_t5a, b"	Dscam3	"T4_t5a, b"	Tissue	Brain	32238425	Development	A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila	GSE147987
234	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	"T4_t5a, c, d"	kek1	"T4_t5a, c, d"	Tissue	Brain	32238425	Development	A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila	GSE147987
235	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	"T4_t5a, d"	side-II	"T4_t5a, d"	Tissue	Brain	32238425	Development	A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila	GSE147987
236	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	"T4_t5b, c, d"	beat-IV	"T4_t5b, c, d"	Tissue	Brain	32238425	Development	A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila	GSE147987
237	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	"T4_t5b, d"	Tl	"T4_t5b, d"	Tissue	Brain	32238425	Development	A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila	GSE147987
238	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	"T4_t5c, d"	robo3	"T4_t5c, d"	Tissue	Brain	32238425	Development	A combinatorial code of transcription factors specifies subtypes of visual motion-sensing neurons in Drosophila	GSE147987
239	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	VAChT	Cholinergic neurons cells	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
240	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	Gad1	Gabaergic neurons	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
241	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	VGlut	Glutamatergic neurons	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
242	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	Vmat	Monoaminergic neurons	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
243	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	twit	Peptidergic neurons	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
244	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neuroblasts	"Mira, Dpn, Lmp, Chinmo, Oatp74D, Sip1, Plum"	Early neuroblast	NA	Brain	31566561	eLife	"Coopted temporal patterning governs cellular hierarchy, heterogeneity and metabolism in Drosophila neuroblast tumors"	GSE114986
245	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neuroblasts	"Mira, Dpn, E93, Stg, Syp"	Late neuroblast	NA	Brain	31566561	eLife	"Coopted temporal patterning governs cellular hierarchy, heterogeneity and metabolism in Drosophila neuroblast tumors"	GSE114986
246	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Glia cells	"wun2, Gs2, Gat, Eaat1, alrm"	Neuropil glia cells	Tissue	Brain	31746739	eLife	Single cell transcriptome atlas of the Drosophila larval brain	GSE134722
247	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	"Wnt4, Wnt10, Fs, dimm, Wnt4"	TEv	Tissue	Brain	33149298	Nature	Neuronal diversity and convergence in a visual system developmental atlas	GSE142787
248	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	"Wnt4, Wnt10, Fs, dimm, Wnt10"	TEd	Tissue	Brain	33149298	Nature	Neuronal diversity and convergence in a visual system developmental atlas	GSE142787
249	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Neural cells	"Wnt4, Wnt10, Fs, dimm, Bsh"	TEe	Tissue	Brain	33149298	Nature	Neuronal diversity and convergence in a visual system developmental atlas	GSE142787
250	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Early photoreceptors	"gua, CG11382, twit, CG14516, gl, ro, egr, peo, CG9150, CG31176"	Early photoreceptors	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
251	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Head vertex	"oc, Ance-2, sog, Ance, dve, yellow-e3, gsb, CG13041, D, CG9782"	Head vertex	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
252	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Hemocytes	"CG8501, He, CG14629, CG42807, Idgf6, CG10131, Glt, CG4250, Prip, CG34331"	Hemocytes	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
253	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Interommatidial cells	"CG5653, Gasp, ffc, CG9691, obst-B, lz, CG9689, sls, Cpr97Ea, aop"	Interommatidial cells	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
254	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Cone cells	"retn, ru, SP2353, Dscam2, brp, Ace, CG15097, nSyb, w, Syt4"	Late photoreceptors and cone cells	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
255	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Lateral peripodial membrane	dpp	Lateral peripodial membrane	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
256	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Morphogenetic furrow	"CG34244, Pde8, dpp, CG2556"	Morphogenetic furrow	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
257	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Peripodial membrane	Dfd	Peripodial membrane	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
258	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Peripodial membrane lateral	"Doc1, opa, Doc2, Doc3, knr1, knl, CG14984, Cda4, ab"	Peripodial membrane lateral	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
259	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Peripodial membrane medial	"CG4766, mab-21, Awh, Dfd, ImpL2, CG15905, caup, Phk-3, CG10359, Spn77Ba"	Peripodial membrane medial	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
260	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Photoreceptors	"Optix, tov, pncr002-3B, CG31997, dac, CG11905, Lcp65Af, ev, CG5835, CG4914"	Photoreceptor precursors	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
261	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Pro	"Optix, tov, pncr002-3B, CG31997, dac, CG11905, Lcp65Af, ev, CG5835, CG4914"	Pro	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
262	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Twi+ cells	"Him, twl, CG9593, CG18557, Act57B, croc, CR45361, Act87E, meso18E, htl"	Twi+ cells	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
263	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Glial cells	"repo, Lapsvn, CG15203, Drgx, CG11426, sens-2, Lsd-1, CG15209, CG32032, Gabat"	Glial cells	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
264	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	A1 cells	"Lim1, fd96Cb, Sp1, TfAP-2, disco-r, unc-4, disco, CG1368, hth, GstD9"	A1 cells	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
265	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	A2 cells	"hth, GstD9, DII, CG12481, TwdlT, nemv, Pka-C3, salr, Sb, CG13737"	A2 cells	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
266	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	A3 cells	"ss, CG8172, CG43778, H15, zfh2, haf"	A3 cells	Organoids	Eye	32431014	Mol Syst Biol	Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics	GSE141590
267	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Inner germarial sheath	CG7194	Inner germarial sheath	Tissue	Germline stem cell	33357404	Curr Biol	Multiple Niche Compartments Orchestrate Stepwise Germline Stem Cell Progeny Differentiation.	GSE143817
268	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	ribosomes	DEC	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
269	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	betaTry	AEC1	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
270	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	betaTry	AEC2	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
271	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	betaTry	AEC3	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
272	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	"Amy-p, Amy-d"	AEC4	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
273	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	"lab, Vha100-4"	MEC	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
274	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	PGRP-SC2	Copper and iron	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
275	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	"PGRP-SC1a, PGRP-SC1b"	LFC	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
276	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	lambdaTry	PEC1	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
277	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	lambdaTry	PEC2	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
278	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	lambdaTry	PEC3	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
279	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	"Alp2, Alp4, Smvt, Oatp58Dc"	EC-like1	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
280	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	"Jon99Ciii, low UMI"	EC-like2	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
281	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ec	"Jon99Cii, low UMI"	EC-like3	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
282	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ee	"pros, AstA"	AstA-EE	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
283	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ee	"pros, NPF"	NPF-EE	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
284	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Ee	"pros, AstC"	AstC-EE	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
285	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Isc_eb	"Dl, esg"	ISC/EB	NA	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
286	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Isc_eb	"Dl, esg"	ISC/EB	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
287	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Cardiac cells	Pgant4	Cardiac cells	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
288	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Cardiac cells	Pgant4	Cardiac cells	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
289	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	ribosomes	DEC	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
290	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	betaTry	AEC1	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
291	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	betaTry	AEC2	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
292	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	betaTry	AEC3	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
293	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	"Amy-p, Amy-d"	AEC4	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
294	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	"lab, Vha100-4"	MEC	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
295	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	PGRP-SC2	Enterocytes	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
296	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	"PGRP-SC1a, PGRP-SC1b"	LFC	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
297	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	lambdaTry	PEC1	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
298	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	lambdaTry	PEC2	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
299	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	lambdaTry	PEC3	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
300	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	"Alp2, Alp4, Smvt, Oatp58Dc"	EC-like1	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
301	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	"Jon99Ciii, low UMI"	EC-like2	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
302	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enterocytes	"Jon99Cii, low UMI"	EC-like3	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
303	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	"pros, AstA"	AstA-EE	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
304	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	"pros, NPF"	NPF-EE	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
305	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	"pros, AstC"	AstC-EE	Tissue	Gut	31915294	Proc Natl Acad Sci U S A	A cell atlas of the adult Drosophila midgut	GSE120537
306	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	NA	Enteroendocrine cells	Tissue	Intestine	31851941	Cell Rep	The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells	GSE132274
307	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	NA	Enteroendocrine cells	Tissue	Intestine	31851941	Cell Rep	The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells	GSE132274
308	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	NA	Enteroendocrine cells	Tissue	Intestine	31851941	Cell Rep	The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells	GSE132274
309	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	NA	Enteroendocrine cells	Tissue	Intestine	31851941	Cell Rep	The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells	GSE132274
310	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Enteroendocrine cells	NA	Enteroendocrine cells	Tissue	Intestine	31851941	Cell Rep	The Cellular Diversity and Transcription Factor Code of Drosophila Enteroendocrine Cells	GSE132274
311	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Cap cells	"Hh, Tj, Him"	Cap cells	Tissue	Ovary	31919193	GENES & DEVELOPMENT	A single-cell atlas of the developingDrosophilaovary identifies folliclestem cell progenitors	GSE131971
312	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Cap cells	bab1	Cap cells	Tissue	Ovary	33340458	Curr Biol	A Progressive Somatic Cell Niche Regulates Germline Cyst Differentiation in the Drosophila Ovary	GSE141701
313	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Follicle cells	"Fas3, ct"	Follicle cells	Tissue	Ovary	33340458	Curr Biol	A Progressive Somatic Cell Niche Regulates Germline Cyst Differentiation in the Drosophila Ovary	GSE141701
314	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Follicle cells	"phantom, Fas3"	Follicle cells	Tissue	Ovary	33357404	Curr Biol	Multiple Niche Compartments Orchestrate Stepwise Germline Stem Cell Progeny Differentiation.	GSE143817
315	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Germline	vasa	Germline	Tissue	Ovary	33340458	Curr Biol	A Progressive Somatic Cell Niche Regulates Germline Cyst Differentiation in the Drosophila Ovary	GSE141701
316	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Igs4	"bnb, GstS1"	Igs4	Tissue	Ovary	33357404	Curr Biol	Multiple Niche Compartments Orchestrate Stepwise Germline Stem Cell Progeny Differentiation.	GSE143817
317	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Igs5	santa-maria	Igs5	Tissue	Ovary	33357404	Curr Biol	Multiple Niche Compartments Orchestrate Stepwise Germline Stem Cell Progeny Differentiation.	GSE143817
318	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Intermingled cells	"Tj, Con"	Intermingled cells	Tissue	Ovary	31919193	GENES & DEVELOPMENT	A single-cell atlas of the developingDrosophilaovary identifies folliclestem cell progenitors	GSE131971
319	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Latestaged follicle cells	"Ilp8, Diap1, Glut4EF, Ance"	Latestaged follicle cells	Tissue	Ovary	32339165	PLoS Biol	A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis	GSE146040
320	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Oviduct cells	abd-A	Oviduct cells	Tissue	Ovary	32339165	PLoS Biol	A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis	GSE146040
321	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Sheath cells	"Stumps, Odd"	Sheath cells	Tissue	Ovary	31919193	GENES & DEVELOPMENT	A single-cell atlas of the developingDrosophilaovary identifies folliclestem cell progenitors	GSE131971
322	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Stalk cells	Atf3	Stalk cells	Tissue	Ovary	32339165	PLoS Biol	A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis	GSE146040
323	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Swarm cells	Sim	Swarm cells	Tissue	Ovary	31919193	GENES & DEVELOPMENT	A single-cell atlas of the developingDrosophilaovary identifies folliclestem cell progenitors	GSE131971
324	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Terminal filaments (tfs)	"Hh, En, Dh44-R2"	Terminal filaments (tfs)	Tissue	Ovary	31919193	GENES & DEVELOPMENT	A single-cell atlas of the developingDrosophilaovary identifies folliclestem cell progenitors	GSE131971
325	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	The stretched cells	Past1	The stretched cells	Tissue	Ovary	32339165	PLoS Biol	A single-cell atlas of adult Drosophila ovary identifies transcriptional programs and somatic cell lineage regulating oogenesis	GSE146040
326	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Stem cells	"Tj, Bond"	Follicular stem cells and progenitors	Tissue	Ovary	31919193	GENES & DEVELOPMENT	A single-cell atlas of the developingDrosophilaovary identifies folliclestem cell progenitors	GSE131971
327	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Germ cells	Vas	Germ cells	Tissue	Ovary	31919193	GENES & DEVELOPMENT	A single-cell atlas of the developingDrosophilaovary identifies folliclestem cell progenitors	GSE131971
328	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Principal cells	"ct, Alp4, Uro, salt"	Principal cells	Tissue	Ureters and lower tubules	32175841	eLife	An abundant quiescent stem cell population in Drosophila Malpighian tubules protects principal cells from kidney stones	PRJNA595625
329	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Stem cells	esg	Renal stem cells	Tissue	Ureters and lower tubules	32175841	eLife	An abundant quiescent stem cell population in Drosophila Malpighian tubules protects principal cells from kidney stones	PRJNA595625
330	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Tracheal cells	Breathless	Tracheal cells	Tissue	Wing	31455604	Development	"DrosophilaSingle cell transcriptomic landscapes of pattern formation, proliferation and growth in wing imaginal discs"	NA
331	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Wing disc proper cells	"Nubbin, teashirt"	Wing disc proper cells	Tissue	Wing	31455604	Development	"DrosophilaSingle cell transcriptomic landscapes of pattern formation, proliferation and growth in wing imaginal discs"	NA
332	Animalia	Arthropoda	Insecta	Diptera	Drosophilidae	Drosophila	Drosophila hilidae	Myoblasts	Twist	Myoblasts	Tissue	Wing	31455604	Development	"DrosophilaSingle cell transcriptomic landscapes of pattern formation, proliferation and growth in wing imaginal discs"	NA
333	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Intestinal stem cells	"Delta, Klu"	Intestinal stem cell/enteroblast cell	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
334	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Visceral muscle cell-1	"Actin, myosin"	Visceral muscle cell-1	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
335	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Visceral muscle cell-2	"Myosin, actin"	Visceral muscle cell-2	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
336	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Visceral muscle cell-3	"Titin, muscle lim"	Visceral muscle cell-3	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
337	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Visceral muscle cell-4	"Wingless, Dpp, WNT4"	Visceral muscle cell-4	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
338	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Cardiac cells	"Sugar transporter, IRX"	Cardia cell-1	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
339	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Cardiac cells	"Sugar transporter, gambicin"	Cardia cell-2	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
340	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Cardiac cells	"C-type lysozyme, gambicin"	Cardia cell-3	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
341	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, sucrose transport protein"	Enterocyte-like 1	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
342	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, ubiquitin"	Enterocyte-like 2	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
343	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, rhoGTPase"	Enterocyte-like 3	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
344	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, trypsin"	Enterocyte-like 4	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
345	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, V-type proton ATPase"	Enterocyte-like 5	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
346	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, yellow protein"	Enterocyte-like 6	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
347	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Lipase, trypsin"	Enterocyte-like 7	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
348	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	Nubbin	Enterocytes 1	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
349	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	Nubbin	Enterocytes 2	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
350	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, angiotensin-converting enzyme"	Enterocytes 3	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
351	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enterocytes	"Nubbin, aquaporin"	Enterocytes 4	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
352	Animalia	Arthropoda	Insecta	Diptera	Culicidae	Anopheles/Culex/Aedes	Mosquitoes	Enteroendocrine cells	Prospero	Enteroendocrine cells	Tissue	Gut	33188922	Insect Biochem Mol Biol	"Heterogeneity of midgut cells and their differential responses to blood meal ingestion by the mosquito, Aedes aegypti"	NA
353	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Columella	"AT1G26680, COBL2, AT3G55180, NCED2, AT5G22550, ATL63"	Columella	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
354	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Neural cells	"CALS1, BOR4, PMI1, AT1G62510, MLP328, AT3G12700, TBL41, PLT6, IREG2, CYP75B1, FLA13, PME61, IAMT1"	Cortex	Tissue	Root	30718350	Plant Physiol	Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells	GSE123013
355	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Neural cells	"AED3, AT1G62510, AT3G12700, NPF6.4, CYP71B34, IAMT1"	Cortex	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
356	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Epidermis and lateral root cap	"LTPG1, HTH, AT2G16230, LTPG2, ALDH3F1"	Epidermis and lateral root cap	Tissue	Root	30718350	Plant Physiol	Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells	GSE123013
357	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Nc	"PLT2, PLT1"	Nc	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
358	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Qc	"PAN, RGF8, TEL1, BBM, DUF9, AGL42, UGT78D1, AT3G18900, SOT17"	Qc	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
359	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Qxc	ATHB-B	Qxc	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
360	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Root cap (columella)	"MEX1, AT1G01570, REM17, AMY3, YUC7, AT3G10320, CAT7, AT3G28540, PHS2, MAPKKK20, DSP4, BAM2, AT4G00750, AGL11, NCED2, ERF091, AT5G22550"	Root cap (columella)	Tissue	Root	30718350	Plant Physiol	Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells	GSE123013
361	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Stele (young vascular tissue)	"SCL15, AT1G26420, GRF11, AT1G60750, GSTU10, AT2G43580, AT3G18250, AT3G28950, XTH14, AT5G09570, PI4KG3, XTH20, SHR"	Stele (young vascular tissue)	Tissue	Root	30718350	Plant Physiol	Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells	GSE123013
362	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Trichoblast	"EXPA7, AtGH9C1, MES15, ADF8, COBL9, TPR14"	Trichoblast	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
363	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Vasculature and columella	"PIN7, PIN3"	Vasculature and columella	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
364	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Xylem	"BHLH144, MYB83, SHR, SCPL35, MYB46, COBL4"	Xylem	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
365	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Epidermal cells	"AT1G10990, AT1G13730, TPS22, XTH17, XYL1, WRKY44, GPAT8, ANL2, sks15, KAN1, AT5G66800, SCAMP2, AT1G33090, WEL2, AtGH9C1, MES15, AT2G46380, AT3G09330, AT3G51410, AT4G04760, DES-1-LIKE"	Nonhair (atrichoblast) epidermal cells	Tissue	Root	30718350	Plant Physiol	Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells	GSE123013
366	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Epidermal cells	"AT1G31950, AT1G76620, GL2, ANL2, PMEI4, AT5G66800"	Nonhair (atrichoblast) epidermal cells	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
367	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Endoderm cells	"PER3, PER9, PBL15, TBL30, AT2G48130, AT3G22620"	Endoderm cells	Tissue	Root	30913408	Dev Cell	Spatiotemporal Developmental Trajectories in the Arabidopsis Root Revealed Using High-Throughput Single-Cell RNA Sequencing	GSE123818
368	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Endoderm cells	"AT1G61590, DIR23, CASP3, AT2G48130, CASP2, AT4G02090, AT4G17215, CASP4, PER64"	Endoderm cells	Tissue	Root	30718350	Plant Physiol	Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells	GSE123013
369	Plantae	Angiospermae	Magnoliopsida	Brassicales	Brassicaceae	Arabidopsis	Arabidopsis thaliana	Endoderm cells	"PER9, AT1G62500, GASA7, AT2G15560, LAC3, BHLH103, AT5G45200, AT5G45210"	Meristem (young) endodermis_cortex	Tissue	Root	30718350	Plant Physiol	Single-Cell RNA Sequencing Resolves Molecular Relationships Among Individual Plant Cells	GSE123013
370	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Ecs	"CD31, PECAM1, IL13RA2, WIF1, CLDN5"	AA_EC	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
371	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Ecs	"CD31, PECAM1, CLDN5, PTGS1"	CA_EC1	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
372	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Ecs	"CD31, PECAM1, CLDN5, ACKR1"	CA_EC2	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
373	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Ecs	"CD31, RELN, FLT4, PECAM1, CLDN5"	LY-EC	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
374	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Epi	"KRT19, MSLN"	Epi	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
375	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Imm	"CD68, CD83"	Imm	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
376	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Fibroblasts	"LUM, COL1A1, PCOLCE, PEBP4"	Adventitial fibroblasts	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
377	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Muscle cells	"SM22, M22, SMA, POSTN"	AA_SMC	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
378	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Cnomolgus monkey	Muscle cells	"SM22, SM22, SMA, DES, ACTC1, SORBS2"	CA_SMC	Tissue	Heart	32371953	Nat Commun	A single-cell transcriptomic landscape of primate arterial aging	NA
379	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	SCG2	"SCG2-ACB21:I28, wavy"	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
380	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	TH	TH	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
381	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	SST	SST	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
382	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	CHAT	SACs	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
383	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	PYGM	Wiry cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
384	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	VIP	"VIP-AC, spiny A12 amacrine cell"	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
385	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	SCGN	SCGN-AC (Spiny AC )	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
386	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	NPY	NPY-AC	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
387	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Gabaergic acs	"TACR1, TACR3"	"SubstanceP-AC, thorny G21 ACs"	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
388	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Glycinergic acs	SYT2	"A8, bistratified small-field AC"	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
389	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Glycinergic acs	CALB2	"AII, bistratified"	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
390	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Glycinergic acs	SLC17A8	Vglut3-AC	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
391	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	H1	"PCP4, PVLB, SPP1, LHX1"	H1	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
392	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	H2	"PCP4, PVLB, CALB1, SPP1, PCDH11X, CHN1, ISL1"	H2	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
393	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Off bcs	"RCVRN, SLC1A2, LPL, RCVRN, GLRA1"	FMB	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
394	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Off bcs	"SCGN, SLC1A2, SCGN, VSX1, NXPH2, LRPPRC, TACR3, LCN1, TENM2"	DB1	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
395	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Off bcs	"SLC1A2 , RAMP3, BCAT1, GSG1, CNTP5, DPP10, SPON1, NFIB, PRKCB"	DB2	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
396	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Off bcs	"CALB1, SCN1A, CABP5, ERBB4, CALB1, SCN1A, SLIT2, PTPRZ1, HCN1, KCNB2, TNNT1, PCDH7, LSAMP_p"	DB3a	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
397	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Off bcs	"SCN1A, CABP5, MEIS2, SLC1A2, MRPS30"	DB3b	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
398	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	On bcs	"RELN, KC1"	IMB	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
399	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	On bcs	"PRKCA, SC1, CABP5, TTR, LOC102135846, HNRNPU, CNTFR, LMO4, GADD45G, SCN1B"	DB4	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
400	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	On bcs	"QPCT, PRKCA, VTN"	DB5	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
401	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	On bcs	"anti-CD15 peptide, CABP5, SCGN, LHX3_p, CALB1, SLC10A4, DNER, FXYD6, RPH3A"	DB6	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
402	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	On bcs	FGF7	GB	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
403	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	On bcs	"DOPEY2, PCDH11X, CST3, NPTX1, NSG1, LOC101925321"	BB	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
404	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	On bcs	"PRKCA, CABP5, PRKCA, TSHB, CA8"	RB	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
405	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Ganglion cells	"RBPMS, POU4F1, POU4F2, POU4F3, THY1, SLC17A6, NEFL, NEFM, SNCG"	Retinal ganglion cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
406	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Rod	"RHO, PDC, NRL, SAG, GT1, GNGT1, NR2E3, GNB1"	Rod	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
407	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Bipolar cells	"VSX2, OTX2, GRM6, PRKCA, TRPM1, GRIK1, VSX1, CABP5"	Bipolar cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
408	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Cones	"ARR3, RCVRN, GT2, GNGT2, OPN1LW, OPN1SW, OPN1MW, PDE6H, GUCA1A"	Cone photoreceptors	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
409	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Amacrine cells	"TFAP2A, TFAP2B, TFAP2C, GAD1, GAD2, SLC6A9, C1QL1, C1QL2"	Amacrine cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
410	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Endothelial cells	"CLDN5, IGFBP7, COL4A1"	Endothelial cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
411	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Microglia cells	"C1QA, C1QB, C1QC, HEXB, CTSS, P2RY12, TMEM119, B2M"	Microglia cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
412	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Horizontal cells	"LHX1, ONECUT1, ONECUT2, CALB1"	Horizontal cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
413	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Muller cells	"RLBP1, GLUL, APOE, CRABP1, CLU, SLC1A3, DKK3, CRYM"	Muller glia cells	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
414	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Pericytes	"RGC5, MGP, KCNJ8, MYL9, COL4A1"	Pericytes	Tissue	Retina	30712875	Cell	Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina	GSE118480
415	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Spermatogonia	"SOHLH1, UTF1, ID4"	Spermatogonia	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
416	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Spermatocytes	"PIWIL1, AURKA"	Spermatocytes	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
417	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Spermatids	"ACRV1, NME5"	Round spermatids	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
418	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Spermatids	"AKAP14, TNP2"	Elongating spermatids	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
419	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Sperm	"CRISP2, OAZ3, PRM2"	Sperm	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
420	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Sertoli cells	"AMH, CLU"	Sertoli cells	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
421	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Leydig cells	INHBA	Immature leydig cells	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
422	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Leydig cells	"CYP11A, INSL3"	Leydig cells	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
423	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Myoid cells	"ACTA2, TAGLN"	Myoid cells	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
424	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Somatic cells	VIM	Somatic cells	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
425	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Germ cells	DDX4	Germ cells	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
426	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Crab-eating macaques	Endothelial cells	vWF	Endothelial cells	Tissue	Testicle	32795394	Dev Cell	Single-Cell RNA Sequencing of the Cynomolgus Macaque Testis Reveals Conserved Transcriptional Profiles during Mammalian Spermatogenesis	NA
427	Animalia	Chordata	Mammalia	Artiodactyla	Cervidae	Cervus	Deer	Stem cells	"CD29, CD73, CD105, CD90, FN1, VIM, NPM1, PDGFRA, CD44, CD49"	Mesenchymal stem cells	Tissue	Periosteum	30673893	Functional & Integrative Genomics	"Single-cell transcriptome provides novel insights into antler stem cells, a cell type capable of mammalian organ regeneration."	PRJNA416396.
428	Animalia	Chordata	Mammalia	Artiodactyla	Cervidae	Cervus	Deer	Cancer stem cells	"CD44, MYC, CD90, CD105"	Cancer stem cells	Tissue	Periosteum	30673893	Functional & Integrative Genomics	"Single-cell transcriptome provides novel insights into antler stem cells, a cell type capable of mammalian organ regeneration."	PRJNA416396.
429	Animalia	Chordata	Mammalia	Artiodactyla	Cervidae	Cervus	Deer	Stem cells	"CD9, SMAD2, MYC, TBX3"	Embryonic stem cells	Tissue	Periosteum	30673893	Functional & Integrative Genomics	"Single-cell transcriptome provides novel insights into antler stem cells, a cell type capable of mammalian organ regeneration."	PRJNA416396.
430	Animalia	Chordata	Mammalia	Artiodactyla	Cervidae	Cervus	Deer	Neural cells	"ID2, NES, VIM"	Neural stem cells	Tissue	Periosteum	30673893	Functional & Integrative Genomics	"Single-cell transcriptome provides novel insights into antler stem cells, a cell type capable of mammalian organ regeneration."	PRJNA416396.
431	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Erythroid cells	"Hbq, Hbb, Hba"	Erythroid cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
432	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Ltf-high neutrophuls	"Cxcr2, Camp, Lrf"	Ltf-high neutrophuls	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
433	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Timeless-high dcs	"Clec4c, Timeless"	Timeless-high dcs	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
434	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Macrophages	"Cd4, Trem2, Cd74, Mhc-II"	Macrophages	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
435	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	B cells	"Cd19, Cd22, Cd79a, Cd79b"	B cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
436	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Mast cells	"Fcer1a, Tpsab1, Cpa3"	Mast cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
437	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Macrophages	"Cd68, C1qb, C1qa, C1qc"	Macrophages	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
438	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Neutrophuls	Cd14	Neutrophils	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
439	Animalia	Chordata	Mammalia	Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	T cells	"Gzmb, Ccl5, Gzma, Cd8a, Cd27, Cd3e"	T cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
440	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Preadipocytes	"ICAM1, PPARg, GGT5"	Committed preadipocytes	Tissue	Adipose	31023895	Science	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue	GSE128889
441	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Adipocytes	"CD105, CD73, CD90, CD59, CD44, CD29"	Adipose-derived mesenchymal stem cells	Organoids	Adipose	30806636	Sci Data	Single-cell RNA-seq of cultured Human adipose-derived mesenchymal stem cells	NA
442	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD142, CLEC11A, FMO2"	Endothelial cells	Tissue	Adipose	31023895	Science	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue	GSE128889
443	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"DPP4, CD55, WNT2"	Interstitial progenitors	Tissue	Adipose	31023895	Science	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue	GSE128889
444	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
445	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"LIPA, LPL, CD36, FABP4"	Macrophages	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
446	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"FOLR2, KLF4"	Macrophage polarization	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
447	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	IL7R	Naive T cells	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
448	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, S100A9, S100A12"	CD16 monocytes	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
449	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	NA	Dendritic cells	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
450	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"GNG11, SEPW1"	Endothelial cells	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
451	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ACKR1, SELE, TM4SF1, VCAM1, TMEM173, PLVAP, ICAM1, PECAM1, VWF, ADAMTS9, TFPI"	Classical Endothelial cells	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
452	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FABP4, LGALS1, RBP7, GPX3, CD36"	MicroVascular endothelial cells	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
453	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	LYVE1	Lymphatic endothelial cells (LECs)	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
454	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"FABP4, CD34, PPARG, ICAM1"	Primarily of progenitor cells	Tissue	Adipose	32991841	Cell	Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans	GSE156776
455	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD34, CFD"	Progenitor_stem cells	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
456	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCL5, IL32"	Activated T cells	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
457	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCL7, CD62L"	T cells	Tissue	Adipose	32991841	Cell	Translocation of Viable Gut Microbiota to Mesenteric Adipose Drives Formation of Creeping Fat in Humans	GSE156776
458	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"ITLN1, MSLN"	Vat progenitor cell	Tissue	Adipose	32066997	Nat Metab	Single-cell analysis of Human adipose tissue identifies depot and disease specific cell types	GSE136260
459	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterochromaffin cells	Col5a2	Enterochromaffin cells	Cell line	Beta cells	31928884	Cell Metab	"Identification of a LIF-Responsive, Replication-Competent Subpopulation of Human beta Cells"	GSE137961
460	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"Ins, Pcp4, Ero1b"	Beta cells	Cell line	Beta cells	31928884	Cell Metab	"Identification of a LIF-Responsive, Replication-Competent Subpopulation of Human beta Cells"	GSE137961
461	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alpha cells	"Sptssb, Spink1, Trr"	Alpha cells	Cell line	Beta cells	31928884	Cell Metab	"Identification of a LIF-Responsive, Replication-Competent Subpopulation of Human beta Cells"	GSE137961
462	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"Clu, Trr, Vin"	Polyhormonal endocrine cells	Cell line	Beta cells	31928884	Cell Metab	"Identification of a LIF-Responsive, Replication-Competent Subpopulation of Human beta Cells"	GSE137961
463	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD11b, CD15"	Ganulocytic Myeloid-derived suppressor cells (G-MDSCs)	Tissue	Biliary	32663198	The Journal of Clinical Investigation	Targeting tumor-associated macrophages and granulocytic myeloid-derived suppressor cells augments PD-1 blockade in cholangiocarcinoma	GSE125449
464	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	CK19	Cholangiocarcinoma	Tissue	Biliary	32663198	The Journal of Clinical Investigation	Targeting tumor-associated macrophages and granulocytic myeloid-derived suppressor cells augments PD-1 blockade in cholangiocarcinoma	GSE125449
465	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD8	Cytotoxic T cells	Tissue	Biliary	32663198	The Journal of Clinical Investigation	Targeting tumor-associated macrophages and granulocytic myeloid-derived suppressor cells augments PD-1 blockade in cholangiocarcinoma	GSE125449
466	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	CD45	Leukocytes	Tissue	Biliary	32663198	The Journal of Clinical Investigation	Targeting tumor-associated macrophages and granulocytic myeloid-derived suppressor cells augments PD-1 blockade in cholangiocarcinoma	GSE125449
467	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Biliary	32663198	The Journal of Clinical Investigation	Targeting tumor-associated macrophages and granulocytic myeloid-derived suppressor cells augments PD-1 blockade in cholangiocarcinoma	GSE125449
468	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Tissue	Biliary	32663198	The Journal of Clinical Investigation	Targeting tumor-associated macrophages and granulocytic myeloid-derived suppressor cells augments PD-1 blockade in cholangiocarcinoma	GSE125449
469	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"Krt5, Krt14, Krt6A"	Basal Tumor cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
470	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Urothelial cells	"Krt13, Upk2, Upk18, Upk3A"	Urothelial cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
471	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"Cd68, Cd14, Cd86, Cd163, Csf1r, Lyz, Fcgr3a, Ms4a7"	Macrophages	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
472	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"Cd8a, Cd8b"	CD8 T cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
473	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"Pecam1, Vwf, Cdh5, Sele, Eng, Cd34"	Endothelial cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
474	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"Dcn, Fap, Col3a1, Col6a1, Pdpn, Col1a2"	Fibroblasts	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
475	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"Myh11, Nr2f2, Cryab, Lmod1, Tppp3"	Muscle cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
476	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	CD4	T lymphocytes	Tissue	Bladder	32497499	Cell	Intratumoral CD4 + T Cells Mediate Anti-tumor Cytotoxicity in Human Bladder Cancer	NA
477	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"Cd4, TNFRSF4, Il7r"	CD4+ T cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
478	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"CCR7, SELL"	Central memory	Blood	Blood	33296686	Immunity	Low-Avidity CD4 + T Cell Responses to SARS-CoV-2 in Unexposed Individuals and Humans with Severe COVID-19	GSE162086
479	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ctc	"CD99, MEG3, ASS1, SPATS2L, DCX"	ARMS CTC	Blood	Blood	29108279	Oncotarget	Size-based detection of sarcoma circulating tumor cells and cell clusters	NA
480	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cvp	"ISL1, TBX5, MEF2C"	Cvp	Cell line	Blood	30893597	Cell Rep	In_ivo Generation of Post-infarct Human Cardiac Muscle by Laminin-Promoted Cardiovascular Progenitors.	GSE100725
481	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	E_b_m	"CLC, HDC"	E_b_m	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
482	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Eos/basophils	PF4	Eos/basophils	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
483	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ep	"HBB, HBA2, HBA1, HBD, AHSP"	Ep	Tissue	Blood	32692727	JCI Insight	Risk-associated alterations in marrow T cells in pediatric leukemia	GEO GSE154109
484	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ep1	BLVRB	Ep1	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
485	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ep2	"HBB, CA1"	Ep2	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
486	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ep-cc	ITGA2B	Ep-cc	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
487	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Eye field module	"SIX6, VSX2, PAX6, OTX2, SIX3, LHX2, RAX, ZIC1"	Eye field module	Cell line	Blood	32231223	Nat Commun	Identification of cell surface markers and establishment of monolayer differentiation to retinal pigment epithelial cells	NA
488	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	General vasculature	"PECAM1, VWF"	General vasculature	Cell line	Blood	32640183	Cell Stem Cell	Generation of Functional Liver Sinusoidal Endothelial cellss from Human Pluripotent Stem-Cell- Derived Venous Angioblasts	NA
489	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Haematopoietic cells	"RUNX1, SPI1"	Haematopoietic cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
490	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Haematopoietic cells	"RUNX1, SPI1"	Haematopoietic cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
491	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hemopoietic stem cells	"CYTL1, GATA2"	Hemopoietic stem cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
492	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hla-dr+clec9a cd1c+ btla- cells	"IFI6, CD300E, CASP1, CX3CR1, ASGR2, CSF1R, GIMAP8, KCNE3, MRC1, IL1R2, IFITM3, CLEC10A, FCER1A, FCGR2C, LILRB2, FCN1, CSF3R, OSCAR, GIMAP7, TLR2, LILRB3, S100A6, SIGLEC9, NLRP1, ITGAX, SIRPA, CCR2, ZEB2, TYROBP, TNFRSF1B"	Hla-dr+clec9a cd1c+ btla- cells	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
493	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hla-dr+clec9a cd1c+btla+ cells	"EEF2, EIF2AK4, CST7, CD1A, S100B, IL18, LTB"	Hla-dr+clec9a cd1c+btla+ cells	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
494	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hspc	CD34	Hspc	Blood	Blood	29706549	Cell	Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.	GSE96772
495	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hspc1	AVP	Hspc1	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
496	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hspc2	HOPX	Hspc2	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
497	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hspc3	SPINK2	Hspc3	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
498	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Germ cells	"OCT4, SOX17"	Human primordial germ cells	Cell line	Blood	31875561	Cell Rep	Medulloblastoma Arises from the Persistence of a Rare and Transient Sox2 + Granule Neuron Precursor	GSE140021
499	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Imp1	CD52	Imp1	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
500	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Imp2	MPO	Imp2	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
501	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	K562 cell line	"BTF3, UQCRQ4, ATPIF1, HBE1"	K562 cell line	Cell line	Blood	30612741	Cell	A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.	GSE120861
502	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Langerhans cells	"CD207, LANGERIN, CD1A"	Langerhans cells	Cell line	Blood	30949159	Front Microbiol	Single-Cell Transcriptome Analysis of CD34+ Stem Cell-Derived Myeloid Cells infected with Human Cytomegalovirus.	GSE124334
503	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lch cells	"CD1A , CD207"	Lch cells	Blood	Blood	31345789	Cancer Discov	Epigenomics and Single-Cell SequencingDefne a Developmental Hierarchy inLangerhans Cell Histiocytosis	NA
504	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukemic stem cells (ISCS)	"CD33, KIT, CD34"	Leukemic stem cells (ISCS)	Blood	Blood	32330454	Cancer Cell	C/EBPa and GATA-2 Mutations Induce Bilineage Acute Erythroid Leukemia through Transformation of a Neomorphic Neutrophil-Erythroid Progenitor	GSE141813
505	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Limb cells	"CD73, BMPR1beta"	Limb bud cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
506	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Limb cells	"CD73, BMPR1beta"	Limb bud cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
507	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lin_hla-dr cells	"HLA-DR, CADM1, BTLA, CX3CR1, BDCA2, CD123, CD1c, Sirpa"	Lin_hla-dr cells	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
508	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lmpp-like lscs	"CD34, CD45RA"	Lmpp-like lscs	Cell line	Blood	31222014	Nat Commun	Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma.	NA
509	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	M_d1	ELANE	M_d1	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
510	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	M_d2	AZU	M_d2	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
511	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"MYB, HOXA9, HOXA10"	Malignant cells	Blood	Blood	30833276	Blood Adv	Identification of enhancer of mRNA decapping 4 as a novel fusion partner of MLL in acute myeloid leukemia	NA
512	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mature cm	"MYL2, MYH7, HOPX, GATA4, SIRPA, PLN, ATXN1, TNNC1, MYL3, MYH6, MYL4, MYL7, TTN, TPM1, ACTN2, NKX2-5, TNNT2, ACTC1"	Mature cm	Cell line	Blood	30893597	Cell Rep	In_ivo Generation of Post-infarct Human Cardiac Muscle by Laminin-Promoted Cardiovascular Progenitors.	GSE100725
513	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryoctyes	PF4	Megakaryoctyes	Blood	Blood	28854175	Nat Biotechnol	Multiplexed quantification of proteins and transcripts in single cells	GSE100501
514	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryoctyes	"MPL, THPO, PEAR1, ITGB3, SELP, ITGA2B, GP1BA"	Megakaryocyte platelets	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
515	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mep	FCER1A	Mep	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
516	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mep-cc	TK1	Mep-cc	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
517	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm	"TMEM132C, MYL4"	Mesoderm	Cell line	Blood	33122739	Sci Rep	Functional in vivo and in vitro effects of 20q11.21 genetic aberrations on hPSC differentiation.	NA
518	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Metamyelocytes	"ITGAM, GGH, CR1, MGAM, MMP9, TIMP2, TNFAIP6, VNN2, ANPEP, DYSF, PLXNC1"	Metamyelocytes	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
519	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mkp	"PLEK, PDLIM1, DAD1"	Mkp	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
520	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"MS4A6A, LYZ, CST3, S100A9, CCL3"	Monocyte precursors	Tissue	Blood	32747558	Proc Natl Acad Sci U S A	Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome	GSE37642
521	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"STAT2, EGR2, CREB5, TREM1, TL2, FCGR3B, ITGAX, NLRP1"	Monocyte precursors	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
522	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mpps	CD34	Mpps	Blood	Blood	31697810	Blood	Single-cell analysis of bone marrow_derived CD341 cells from children with sickle cell disease and thalassemia	GSE133181
523	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"SLC4A10, TRAV1-2"	Mucosal-associated invariant T cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
524	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRAV1-2, TRAJ33"	Mucosal-associated invariant T cells (mait)	Blood	Blood	32881995	Blood	Tumor intrinsic and extrinsic determinants of response to blinatumomab in adults with B-ALL	NA
525	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8B, TBX21, T-bet"	Mucosal-associated invariant T cells 1	Blood	Blood	32112047	Mucosal Immunol	IL-17 production by tissue-resident MAIT cells is locally induced in children with pneumonia	GSE124885
526	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD103, ITGAE, CCR6, ZBTB16, PLZF, HIF1A, BATF, GNLY"	Mucosal-associated invariant T cells 17	Blood	Blood	32112047	Mucosal Immunol	IL-17 production by tissue-resident MAIT cells is locally induced in children with pneumonia	GSE124885
527	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	DDIT3	Mucosal-associated invariant T cells ddit3+	Blood	Blood	32112047	Mucosal Immunol	IL-17 production by tissue-resident MAIT cells is locally induced in children with pneumonia	GSE124885
528	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"S100A8, S100A9, MNDA, FGL2, CLEC7A, IFI30"	Myeloid-derived cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
529	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"S100A8, S100A9, MNDA, FGL2, CLEC7A, IFI30"	Myeloid-derived cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
530	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	NA	NA	Blood	Blood	31792411	Nat Biotechnol	Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia	GSE139369
531	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocytes	"GNLY, GZMB, PRF1"	Cytotoxic effector cells	Blood	Blood	32382059	Nat Commun	Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease	E-MTAB-8911
532	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocytes	GZMK	Cytotoxic memory cells	Blood	Blood	32382059	Nat Commun	Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease	E-MTAB-8911
533	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocytes	"IL2RA, FOXP3, LEF1, SELL"	Regulatory cells	Blood	Blood	32382059	Nat Commun	Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease	E-MTAB-8911
534	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD27	Memory B cells	Blood	Blood	32573488	JCI Insight	Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses.	GSE149133
535	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MME	Transitional B cells	Blood	Blood	32573488	JCI Insight	Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses.	GSE149133
536	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	PRDM1	Plasma cells	Blood	Blood	32573488	JCI Insight	Single-cell repertoire tracing identifies rituximab-resistant B cells during myasthenia gravis relapses.	GSE149133
537	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"FCGR3B, MME"	Mature neutrophils	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
538	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, ITGAM, KLF4"	Classical monocytes	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
539	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	FCGR3A	Non-classical monocytes	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
540	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, FCGR3A"	Intermediate monocytes	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
541	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"MME, CD101"	Mature neutrophils	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
542	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"APOE, MSR1, MARCO, FBP1"	Alveolar macrophages	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
543	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	NOTCH1	Arterial-Like hiPS-Ecs	Cell line	Blood	33178051	Front Physiol	Flow-Induced Transcriptomic Remodeling of Endothelial cellss Derived From Human Induced Pluripotent Stem Cells	GSE150741 and GSE150740.
544	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"NRP2, FTH1, EPHB4"	Venous-Like hiPS-Ecs	Cell line	Blood	33178051	Front Physiol	Flow-Induced Transcriptomic Remodeling of Endothelial cellss Derived From Human Induced Pluripotent Stem Cells	GSE150741 and GSE150740.
545	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"PD-1, CD39"	Antitumor neoantigen-specific tils	NA	Blood	33303615	Science	Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against Human cancer	NA
546	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Naive cells	"CCR7, SELL"	Naive cells	Blood	Blood	31083348	Int J Mol Sci	Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure.	NA
547	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Np1	TYMS	Np1	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
548	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Np2	LYZ	Np2	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
549	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pluripotency cells	"OCT4, SOX2, SSEA4, TRA-1-81"	Pluripotency cells	Blood	Blood	33059525	J Am Heart Assoc	Single-Cell Transcriptomics of Engineered Cardiac Tissues From Patient-Specific Induced Pluripotent Stem Cell_Derived Cardiomyocytes Reveals Abnormal Developmental Trajectory and Intrinsic Contractile Defects in Hypoplastic Right Heart Syndrome	GSE157157
550	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pre module	"MITF, BEST-1, RLBP1, PMEL, TYR, RPE65"	Pre module	Cell line	Blood	32231223	Nat Commun	Identification of cell surface markers and establishment of monolayer differentiation to retinal pigment epithelial cells	NA
551	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Adipocytes	PDGFRA	Pre-adipocytes	Cell line	Blood	33020665	Nature Genetics	Highly interconnected enhancer communities control lineage-determining genes in Human mesenchymal stem cells.	GSE113253
552	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Preb1	"IRF8, IRF7"	Preb1	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
553	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Preb2	"DNTT, CD79A"	Preb2	Blood	Blood	31270458	Nature	Somatic mutations and cell identity linked by Genotyping of Transcriptomes	GSE117826
554	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Chondrocytes	"CD146, CD44"	Pre-chondrocytes	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
555	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Chondrocytes	"CD146, CD44"	Pre-chondrocytes	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
556	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TYMS, MKI67"	Proliferating T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
557	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, MKI67"	Proliferative T cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
558	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Promyelocytes	"ELANE, PRTN3, AZU1, MPO, PRSS57, CTSG, RNASE2"	Promyelocytes	Cell line	Blood	30949159	Front Microbiol	Single-Cell Transcriptome Analysis of CD34+ Stem Cell-Derived Myeloid Cells infected with Human Cytomegalovirus.	GSE124334
559	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Promyelocytes	"ACPP, GLB1, CTSS, SCL11A1, ITM2B, P2RX1, TREM1, TRIM22, SP110, IRF1, STAT1, NCOA1"	Promyelocytes-myelocyte	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
560	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"RGCC, HIST1H1C, MYADM"	RGCC T cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
561	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Segmented neutrophil cells	"MGAM, MMP25, SIGLEC9, VENTX, NLRP1, VENTX."	Segmented neutrophil cells	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
562	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"CD164, CD73, CD146"	Self-renewing human skeletal stem cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
563	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"CD164, CD73, CD146"	Self-renewing human skeletal stem cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
564	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cell-like cells	"TCF7, CD39, TIM3"	Selfrenewing stem cell-like TILs	NA	Blood	33303615	Science	Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against Human cancer	NA
565	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD95, CCR7"	Stem cell memory (scm) T cells	NA	Blood	33303615	Science	Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against Human cancer	NA
566	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stormal cells	"PLVAP, VWF, LYVE1, CCL21, COL3A1, COL1A1, ACTA2, GPM6B, S100B"	Storma/glia cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134815
567	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stormal cells	"PLVAP, VWF, LYVE1, CCL21, COL3A1, COL1A1, ACTA2, GPM6B, S100B"	Storma/glia cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134815
568	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD4, CD8"	T effec or memory cells	Blood	Blood	30890702	Nat Commun	Impact of constitutional TET2 haploinsufficiency on molecular and clinical phenotype in Humans	NA
569	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL21 , POU2AF1"	T follicular-helper-like	Blood	Blood	33296686	Immunity	Low-Avidity CD4 + T Cell Responses to SARS-CoV-2 in Unexposed Individuals and Humans with Severe COVID-19	GSE162086
570	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	ARID5B	Activated T helper	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
571	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Terminally differentiated effector memory cell	"CD3, CD8, CD45RA"	Terminally differentiated effector memory cell	Blood	Blood	30890702	Nat Commun	Impact of constitutional TET2 haploinsufficiency on molecular and clinical phenotype in Humans	NA
572	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD161	T helper 17 cells	Blood	Blood	30397350	Nature Immunology	Human retinoic acid_regulated CD161+ regulatory T cells support wound repair in intestinal mucosa	"GSE40918, GSE45975"
573	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CCR4	T helper 2 cells	Blood	Blood	33188258	Sci Rep	Characterisation of CD4+_T-cell subtypes using single cell RNA sequencing and the impact of cell number and sequencing depth.	GSE147928
574	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tox cells	"CCR7, CD45RA, CD28, Perforin, GzmB, CD38, PD-1, TIGIT, 2B4, CD39, Tim-3, Lag-3"	Tox cells	Blood	Blood	32620560	Sci Immunol	TOX is expressed by exhausted and polyfunctional Human effector memory CD8 + T cells	GSE148234
575	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tox tcf-1 cells	"CCR7, CD45RA, CD28, Perforin, GzmB, CD38, PD-1, TIGIT, 2B4, CD39, Tim-3, Lag-3"	Tox tcf-1 cells	Blood	Blood	32620560	Sci Immunol	TOX is expressed by exhausted and polyfunctional Human effector memory CD8 + T cells	GSE148234
576	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD28, IL7R"	Transitional memory T cells	Blood	Blood	33296686	Immunity	Low-Avidity CD4 + T Cell Responses to SARS-CoV-2 in Unexposed Individuals and Humans with Severe COVID-19	GSE162086
577	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Type-i interferon response	"MX1, OAS1"	Type-i interferon response	Blood	Blood	33296686	Immunity	Low-Avidity CD4 + T Cell Responses to SARS-CoV-2 in Unexposed Individuals and Humans with Severe COVID-19	GSE162086
578	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Umbilical intermediate bi-potent cells	"MS4A3, FCER1A, CCR3, HDC, CSF2RB, GATA2"	Umbilical intermediate bi-potent cells	Blood	Blood	31049560	GigaScience	Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood	NA
579	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Umbilical intermediate bi-potent cells	"MS4A3, FCER1A, CCR3, HDC, CSF2RB, GATA2"	Umbilical intermediate bi-potent cells	Blood	Blood	31049560	GigaScience	Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood	NA
580	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Xcr1-cd1s	"CCNB1, CDCA2, CCNB2, BUB1B, CDCA5, KIF11, CENPF, UBE2C, KIF18B, AURKB, CCNA2, MKI67, BUB1, CDK1, CDCA3, KIF2C, CDCAB, KIFC1, CDC20, CENPW, TIMELESS, MCM8, CHEK1, MCM4, CXCR4, CLEC12A"	Xcr1-cd1s	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
581	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	NKG7	Activated cytotoxic T cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
582	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
583	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Blast cells	CD34	Blast cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
584	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD4	CD4 T cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
585	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 cytotoxic T cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
586	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroids	GATA1	Immature erythroids	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
587	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"AZU1, IL8"	Immature granulocytes	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
588	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	PF4	Megakaryocytes	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
589	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CCR10	Memory T cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
590	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"S100A8, S100A9, FCER1A"	Dendritic cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
591	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	ID3	Naive T cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
592	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
593	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	TNFRSF18	Regulatory T cells (Treg)	Blood	Blood	28091601	Nat Commun	Massively parallel digital transcriptional profiling of single cells	NA
594	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD20, CD19"	B cells	Blood	Blood	28854175	Nat Biotechnol	Multiplexed quantification of proteins and transcripts in single cells	GSE100501
595	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD11b, CD14, CD33"	Monocytes	Blood	Blood	28854175	Nat Biotechnol	Multiplexed quantification of proteins and transcripts in single cells	GSE100501
596	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	FCGR3A	FCGR3A+ monocytes	Blood	Blood	28854175	Nat Biotechnol	Multiplexed quantification of proteins and transcripts in single cells	GSE100501
597	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD56, CD158e1"	Natural killer (NK) cells	Blood	Blood	28854175	Nat Biotechnol	Multiplexed quantification of proteins and transcripts in single cells	GSE100501
598	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD4, CD8"	T cells	Blood	Blood	28854175	Nat Biotechnol	Multiplexed quantification of proteins and transcripts in single cells	GSE100501
599	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"LT-beta, IL-7R, GNLY, GZMB"	ILC1	Blood	Blood	29296884	Blood Adv	Changes in bone marrow innate lymphoid cell subsets in monoclonal gammopathy:target for IMiD therapy	GSE104600
600	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD3_, CD56"	Natural killer (NK) cells	Blood	Blood	29296884	Blood Adv	Changes in bone marrow innate lymphoid cell subsets in monoclonal gammopathy:target for IMiD therapy	GSE104600
601	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"ZNF683, TBX21"	TEMRA subset	Blood	Blood	29352091	Sci Immunol	Precursors of Human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis	GSE106544.
602	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"KLRG1, CX3CR1, PRSS23, SPON2, TCF7 , CRTAM, ZNF683"	CD4-CTL cells cluster 1 and 2	Blood	Blood	29352091	Sci Immunol	Precursors of Human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis	GSE106544.
603	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CD12, CD27, CD28, LTB, JUNB"	CD4-CTL cells cluster 3 and 4	Blood	Blood	29352091	Sci Immunol	Precursors of Human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis	GSE106544.
604	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GZMB, NKG7"	CD4-CTL effectors	Blood	Blood	29352091	Sci Immunol	Precursors of Human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis	GSE106544.
605	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, JUNB, LTB"	CD4-CTL precursors	Blood	Blood	29352091	Sci Immunol	Precursors of Human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis	GSE106544.
606	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD37"	B cells	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
607	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD68 , CD16, CD14, S100A12 ."	CD16 CD14 monocytes	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
608	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R , CD27 , CCR7"	CD4 memory T cells	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
609	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMK, CD8A, CD8B"	CD8 T cells	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
610	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CST3, CD1C, FCER1A"	Monocyte derived dendritic cells	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
611	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD27, CCR7, CD8A, CD8Ba"	Naive T cells	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
612	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD160, NKG7, GNLY, CD247, CCL3, GZMB"	Natural killer (NK) cells	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
613	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	ID2	Natural killer (NK) cells progenitors	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
614	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"ZNF683, CD8A, CD8B"	Natural killer T (NKT) cells	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
615	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"GZMB , CD123"	Plasmacytoid dendritic cells (pdcs)	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
616	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR10, CD25, CD52 , CMTM7, FOXP3."	Regulatory T cells (Treg)	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
617	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"INS, MAFA, PDX1"	Beta cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
618	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Blast cells	"CD34, GATA2"	Blast cells	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
619	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, ISL, ChAT"	Motor neurons	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
620	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, PAX6"	Neuronal progenitors	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
621	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, HES1"	Gliogenic progenitors	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
622	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, SOX2"	Neuronal progenitors	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
623	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, GAD1, GAD2"	Interneuron	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
624	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, SHH, FOXA2, ARX"	Floor plate	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
625	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, SLC1A3, IGFBP3, GATA6, ALDH1L1"	Early gliogenic	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
626	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, SOX2, HES1, ID3"	Neuronal progenitors	Blood	Blood	29551301	Cell Stem Cell	Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology	GSE90553
627	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD34, CD14"	Monocytes	Blood	Blood	29706549	Cell	Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.	GSE96772
628	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3	T cells	Blood	Blood	29740158	Leukemia	Single-cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukemia.	NA
629	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	29747686	Genome Biol	"GiniClust2:a cluster-aware, weighted ensemble clustering method for cell-type detection."	SRP073767
630	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Blood	Blood	29747686	Genome Biol	"GiniClust2:a cluster-aware, weighted ensemble clustering method for cell-type detection."	SRP073767
631	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	CD56	Natural killer (NK) cells	Blood	Blood	29747686	Genome Biol	"GiniClust2:a cluster-aware, weighted ensemble clustering method for cell-type detection."	SRP073767
632	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	CD56	Natural killer (NK) cells	Blood	Blood	29747686	Genome Biol	"GiniClust2:a cluster-aware, weighted ensemble clustering method for cell-type detection."	SRP073767
633	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G"	T cells	Blood	Blood	29747686	Genome Biol	"GiniClust2:a cluster-aware, weighted ensemble clustering method for cell-type detection."	SRP073767
634	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MME, MS4A1, MS4A1, CD40, IL4R, IL7R"	Immature B cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
635	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MME, MS4A1, CD34, CD38, MME, CD24, IL7R"	Pre-pro B cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
636	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MME, MS4A1, CD34, CD40, IL7R, IL4R, CD19"	Pre B cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
637	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MME, MS4A1, CD34, IGLL5"	Non-dividing Pre B cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
638	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
639	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD14"	CD14 monocytes	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
640	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
641	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
642	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, CD226-, APOE"	Epithelial cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
643	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	PPBP	Megakaryocytes	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
644	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GZMA, GZMB, GNLY, NKG7"	Natural killer (NK) cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
645	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD8B, IL7R, NKG7, GZMA, GZMH, GZMK"	Cytotoxic T cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
646	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CCR7"	Naive T cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
647	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD8A, CD8B"	CD8 T cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
648	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, IL7R, CD4"	CD4+ T cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
649	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, NKG7, GZMA, GZMH, GZMK"	Cytotoxic T cells	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
650	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD14"	CD14+ Monocytes	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
651	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCGR3A, MS4A7"	FCGR3A+ Monocytes	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
652	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	NK cells 1	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
653	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GZMB, NKG7"	NK cells 2	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
654	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD4	Helper T cells	Blood	Blood	29946020	Proc Natl Acad Sci U S A	Gene expression distribution deconvolution in single-cell RNA sequencing	NA
655	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD25"	Regulatory T cells	Blood	Blood	29946020	Proc Natl Acad Sci U S A	Gene expression distribution deconvolution in single-cell RNA sequencing	NA
656	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD45RA"	Naive T cells	Blood	Blood	29946020	Proc Natl Acad Sci U S A	Gene expression distribution deconvolution in single-cell RNA sequencing	NA
657	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD45RO"	Memory T cells	Blood	Blood	29946020	Proc Natl Acad Sci U S A	Gene expression distribution deconvolution in single-cell RNA sequencing	NA
658	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD8	Cytotoxic T cells	Blood	Blood	29946020	Proc Natl Acad Sci U S A	Gene expression distribution deconvolution in single-cell RNA sequencing	NA
659	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, CD45RA"	Naive cytotoxic T cells	Blood	Blood	29946020	Proc Natl Acad Sci U S A	Gene expression distribution deconvolution in single-cell RNA sequencing	NA
660	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cancer stem cells	"SOX2, KLF4, EPCAM, TWIST1, SNAI1, SNAI2, ZEB1, ZEB2, NOTCH1, MSI, ALDH, CD44, CD47"	Cancer stem cells	NA	Blood	32693406	Blood	Deep MRD profiling defines outcome and unveils different modes of treatment resistance in standard and high risk myeloma	GSE147165
661	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	"TNNT2, NKX2-5"	Cardiac cells	Blood	Blood	33059525	J Am Heart Assoc	Single-Cell Transcriptomics of Engineered Cardiac Tissues From Patient-Specific Induced Pluripotent Stem Cell_Derived Cardiomyocytes Reveals Abnormal Developmental Trajectory and Intrinsic Contractile Defects in Hypoplastic Right Heart Syndrome	GSE157157
662	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, MS4A1"	B cells	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
663	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ"	CD14 monocytes	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
664	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCGR3A, MS4A7"	CD16 monocytes	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
665	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"PPBP, PF4"	Megakaryocytes	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
666	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"S100A8, S100A9"	Myeloid cells	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
667	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
668	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"HBG1, HBG2"	Proliferating erythrocytess	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
669	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD4, IL7R"	CD4 T Cell	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
670	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, GZMB, CD8A"	CD8 T cell	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
671	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, TNFRSF18"	Treg Cell	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
672	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CCR10"	Memory T cell	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
673	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, ID3"	Naive T Cell	Blood	Blood	30016977	J Transl Med	PBMC fixation and processing for Chromium single-cell RNA sequencing	GSE112845
674	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"NKX2-5, TNNT2"	Cardiomyocytes	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
675	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"RYR2, PLN, TNNT2"	Cardiomyocytes	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
676	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"EOMES, MESP1, LHX1"	Cardioprogenitors	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
677	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"ISL1, CBLN2, HAS2"	Early differentiating cardiomyocytes	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
678	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"AURKA, CDK1, CDKN3"	High proliferative cardiomyocytes	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
679	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"TCAP, TRH, MYH6"	Differentiated cardiomyocytes	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
680	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"FLI1, SOX7, PECAM"	Endothelial/blood lineage cells	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
681	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"WT1, TBX18, FHL1"	Epicardial lineage cells	Cell line	Blood	33397958	Nat Commun	QKI is a critical pre-mRNA alternative splicing regulator of cardiac myofibrillogenesis and contractile function	GSE144009
682	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"HLA-DRA, CD74, HLA-DPB1, CD79A, HLA-DPA1, HLA-DQA1, HLA-DRB1, MS4A1, CD37, CD52, HLA-DQB1, RPS25, CD79B, RPS5, LTB, PTPRCAP, RPL3, RPL10A, RPSA, RPL18, RPS21, RPL14, BANK1, RPL5, RPS7, BTG1, NPM1, HLA-DRB5, EEF1B2, HLA-DMA"	B cells	Blood	Blood	30068984	Sci Rep	High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma	GSE107747
683	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A9, LYZ, RP11-1143G9.4, S100A8, VCAN, FOS, S100A12, MNDA, EGR1, CD14, CSTA, DUSP1, NEAT1, TYMP, GAPDH, TSPO, CCL5, CTSS, FCN1, MCL1, S100A6, MYL12A, IER2, NAMPT, MS4A6A"	Monocytes	Blood	Blood	30068984	Sci Rep	High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma	GSE107747
684	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, CCL5, GNLY, IL32, CD3D, CST7, GZMH, PTPRCAP, GZMA, CD52, CD2, FGFBP2, GZMB, KLRD1, RARRES3, CCL4, CD3E, PRF1, AC092580.4, C12orf75, CD3G, CD8A, CTSW, LCK, HOPX, GZMM, CD8B, LYAR, EVL"	Natural killer (NK) cells	Blood	Blood	30068984	Sci Rep	High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma	GSE107747
685	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"HNRNPA1, RPLP0, RPL3, RPL5, NPM1, RPL10A, EIF3E, RPSA, HSP90AB1, KIAA0125, EEF2, ZFAS1, SPINK2, LDHB, STMN1, ANP32B, SNHG7, SNHG8, C6orf48, SOX4, IMPDH2, RP11-620J15.3, EBPL, CYTL1, HMGA1, PRSS57, CDK6, ANKRD28, EGFL7, HOPX"	T cells	Blood	Blood	30068984	Sci Rep	High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma	GSE107747
686	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CADM1, CLEC9A, IDO1, C1orf54, BATF3, SLAMF8, SNX22, CPNE3, GCSAM, THBD, CLNK, ID2, CLEC7A, CXCL16, CCND1, XCR1, SLAMF7, RAB7B, 3-Sep, LY75, FSCN1, NOTCH2"	Conventional dendritic cells 1	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
687	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC10A, FCER1A"	Conventional dendritic cells 2	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
688	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"BTLA, BTG2, IRF7, IFI44L, PLAC8, IL3RA, CLEC4C, LILRA4, GZMB, PTCRA, SPIB, TCF4, TLR7"	Plasmacytoid dendritic cells	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
689	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	NA	Chondroprogenitor cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
690	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	NA	Chondroprogenitor cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
691	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	NA	Chondroprogenitor cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
692	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SOX2, OTX1, NES, PAX6"	Neurogenic cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
693	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SOX9, CLO2A1, IGFBP5, NKX3-2"	Chondrogenic cells	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
694	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PRRX1, COL6A1, COL1A1, COL5A1"	Mesenchyme	Cell line	Blood	32070421	Stem Cell Research & Therapy	Prospective isolation of chondroprogenitors from Human iPSCs based on cell surface markers identified using a CRISPR-Cas9- generated reporter	NA
695	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	30250229	Nat Commun	Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA	GSE117988
696	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	IL7R	CD4 T cells	Blood	Blood	30250229	Nat Commun	Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA	GSE117988
697	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	FCGR3A	Dendritic cells	Blood	Blood	30250229	Nat Commun	Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA	GSE117988
698	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD14	Myeloid cells	Blood	Blood	30250229	Nat Commun	Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA	GSE117988
699	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	GZMA	Natural killer (NK) cells	Blood	Blood	30250229	Nat Commun	Acquired cancer resistance to combination immunotherapy from transcriptional loss of class I HLA	GSE117988
700	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD11b"	Classical monocytes	Blood	Blood	31917836	Journal of Experimental medicine	Dynamics of Human monocytes and airway macrophages during healthy aging and after transplant	NA
701	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD34, CD38, CD45RA, CD123, CD135"	Common myeloid progenitors	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
702	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	CD34	Hematopoietic stem cells	Cell line	Blood	30348672	Blood Adv	Ex vivo Human HSC expansion requires coordination of cellular reprogramming with mitochondrial remodeling and p53 activation	GSE110974
703	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, CD25, CD127, CD45RA, CD161"	CD4 T cells	Blood	Blood	30397350	Nature Immunology	Human retinoic acid_regulated CD161+ regulatory T cells support wound repair in intestinal mucosa	"GSE40918, GSE45975"
704	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cycling T cells	"MKI67, CDK1"	Cycling T cells	Blood	Blood	33296686	Immunity	Low-Avidity CD4 + T Cell Responses to SARS-CoV-2 in Unexposed Individuals and Humans with Severe COVID-19	GSE162086
705	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMH, GZMB, GZMA, PRF1"	Cytotoxic T cells	Blood	Blood	31719197	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	NA
706	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IFNG, CSF2, PRF1, GNLY"	Cytotoxic T cells	Blood	Blood	33296686	Immunity	Low-Avidity CD4 + T Cell Responses to SARS-CoV-2 in Unexposed Individuals and Humans with Severe COVID-19	GSE162086
707	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, S100A4"	CD4 memory T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
708	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CCR7"	CD4 naive T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
709	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3E, IL7R"	CD4 T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
710	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"NKG7, CD8A, PRF1"	CD8 effector T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
711	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"NKG7, CD8A, S100A4, GZMK"	CD8 memory T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
712	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, CCR7"	CD8 naive T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
713	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3E, CD8A"	CD8 T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
714	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
715	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	FECR1A	Dendritic cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
716	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, CD79A, CD40, CD86, HLA-DRB1"	B cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
717	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"ITGAX, PLAC8, FCER1A, IL3RA, CD1C, CD33, CD1E, HLA-DRB1, CLEC4C, NRP1, LY75, ANPEP"	Dendritic cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
718	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD16, CX3CR1, ITGAM, CD163, CD68, CD86, CSF1R, CCR2, SELL"	Monocytes	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
719	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCR1, NCAM1, NCR3, KLRC1, KLRD1, B3GAT1, NKG7, KLRB1, CCL5, GNLY, GZMB"	Natural killer (NK) cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
720	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IGJ, PLD4"	Developing T cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
721	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8	PD-1-CD8 TILs	Blood	Blood	30635236	Immunity	Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1CD8 Tumor-Infiltrating T Cells.	GSE122969
722	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8	PD-1-CD8 TILs	Blood	Blood	30635236	Immunity	Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1CD8 Tumor-Infiltrating T Cells.	GSE122969
723	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8	PD-1-CD8 TILs	Blood	Blood	30635236	Immunity	Checkpoint Blockade Immunotherapy Induces Dynamic Changes in PD-1CD8 Tumor-Infiltrating T Cells.	GSE122969
724	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells/plasmablasts	Blood	Blood	30692607	Genes Immun	Prioritizing Crohn disease genes by integrating association signals with gene expression implicates monocyte subsets	GSE57945
725	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Dendritic cells	Blood	Blood	30692607	Genes Immun	Prioritizing Crohn disease genes by integrating association signals with gene expression implicates monocyte subsets	GSE57945
726	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Blood	Blood	30692607	Genes Immun	Prioritizing Crohn disease genes by integrating association signals with gene expression implicates monocyte subsets	GSE57945
727	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NCAM1	Natural killer (NK) cells	Blood	Blood	30692607	Genes Immun	Prioritizing Crohn disease genes by integrating association signals with gene expression implicates monocyte subsets	GSE57945
728	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8alpha	CD8 T cells	Blood	Blood	30742126	Nat Biotechnol	Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells	GSE119139
729	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	CD45	Leukocyte	Blood	Blood	30742126	Nat Biotechnol	Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells	GSE119139
730	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD45RA, CD127"	TN and TSCM	Blood	Blood	30742126	Nat Biotechnol	Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells	GSE119139
731	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	CD45RO	TCM and TEM	Blood	Blood	30742126	Nat Biotechnol	Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells	GSE119139
732	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD25, CD38, CD69"	Lymphocyte cells	Blood	Blood	30742126	Nat Biotechnol	Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells	GSE119139
733	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD7, CD27, CD28, CD134, CD137, CD278"	T cost	Blood	Blood	30742126	Nat Biotechnol	Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells	GSE119139
734	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"SLAMF1, LAG3, BTLA, PD1, TIM3"	T Inhibit	Blood	Blood	30742126	Nat Biotechnol	Proliferation tracing with single-cell mass cytometry optimizes generation of stem cell memory-like T cells	GSE119139
735	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A"	B cells	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
736	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroids	NA	Immature erythroids	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
737	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroids	NA	Immature erythroids	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
738	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroids	NA	Immature erythroids	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
739	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"AZU1, IL8"	Immature granulocytes	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
740	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	HBA1	Mature erythrocytes	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
741	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, FCN1"	Monocytes	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
742	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ectoderm cells	"PAX6, SOX1, OTX2"	Ectoderm cells	Cell line	Blood	31511693	Nature	Controlled modelling of Human epiblast and amnion development using stem cells	GSE134571
743	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ectoderm cells	"GEAP, CALY"	Ectoderm cells	Cell line	Blood	33122739	Sci Rep	Functional in vivo and in vitro effects of 20q11.21 genetic aberrations on hPSC differentiation.	NA
744	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GNLY, FGFBP2, GZMH"	Effector memory T cells	Blood	Blood	32042196	Nat Med	Benjamin P Fairfax	EGAS00001004081
745	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"INS, PDX1, MAFA"	Endocrine cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
746	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endoderm cells	"SOX17, CXCR4, CER1, FOXA2"	Endoderm cells	Cell line	Blood	31511693	Nature	Controlled modelling of Human epiblast and amnion development using stem cells	GSE134571
747	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endoderm cells	"GSTA2, CP"	Endoderm cells	Cell line	Blood	33122739	Sci Rep	Functional in vivo and in vitro effects of 20q11.21 genetic aberrations on hPSC differentiation.	NA
748	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD38low, CD21low, CD19"	B cells	Blood	Blood	30890702	Nat Commun	Impact of constitutional TET2 haploinsufficiency on molecular and clinical phenotype in Humans	NA
749	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	HEMOGLOBINS	Erythrocytes	Cell line	Blood	30949159	Front Microbiol	Single-Cell Transcriptome Analysis of CD34+ Stem Cell-Derived Myeloid Cells infected with Human Cytomegalovirus.	GSE124334
750	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1B	Monocyte-derived dendritic cells	Cell line	Blood	30949159	Front Microbiol	Single-Cell Transcriptome Analysis of CD34+ Stem Cell-Derived Myeloid Cells infected with Human Cytomegalovirus.	GSE124334
751	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD68"	Monocytes	Cell line	Blood	30949159	Front Microbiol	Single-Cell Transcriptome Analysis of CD34+ Stem Cell-Derived Myeloid Cells infected with Human Cytomegalovirus.	GSE124334
752	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroblasts	"GYPA, CD36, TFRC"	Erythroblasts	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
753	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD95, CD86, c-KIT, CD155, HLA-DR"	Myeloid cells	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
754	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"IL1R2, S100A8, S100A9, S100A12"	Myeloid cells	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
755	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroblasts	AHSP	Erythroblasts	Blood	Blood	30833276	Blood Adv	Identification of enhancer of mRNA decapping 4 as a novel fusion partner of MLL in acute myeloid leukemia	NA
756	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cell	"SOX17, MIXL1"	Cluster0	Cell line	Blood	30995470	Cell Rep	Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development	GSE127202
757	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
758	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ"	CD14 monocytes	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
759	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	IL7R	CD4 T cells	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
760	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
761	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
762	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	PPBP	Megakaryocytes	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
763	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
764	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Blood	Blood	31022373	Cell Syst	Performance Assessment and Selection of Normalization Procedures for Single-Cell RNA-Seq	NA
765	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cell	"POU5F1, MIXL1"	Cluster1	Cell line	Blood	30995470	Cell Rep	Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development	GSE127202
766	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cell	"SOX17, ID1"	Cluster2	Cell line	Blood	30995470	Cell Rep	Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development	GSE127202
767	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cell	"MIXL1 , LHX1, NODAL"	Cluster3	Cell line	Blood	30995470	Cell Rep	Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development	GSE127202
768	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cell	"EOMES, GATA6, NODAL, HHEX"	Cluster3	Cell line	Blood	30995470	Cell Rep	Single-Cell RNA-Sequencing-Based CRISPRi Screening Resolves Molecular Drivers of Early Human Endoderm Development	GSE127202
769	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"LAG3, TIGIT, HAVCR2, TIM3, PDCD1, PD1"	Exhausted T cells	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
770	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	FCGR3A	FCGR3A monocytes	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
771	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	"CD34, SOX4, FLT3, CD74"	Hematopoietic stem cells	Blood	Blood	31049560	GigaScience	Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood	NA
772	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	"CD34, SOX4, FLT3, CD74"	Hematopoietic stem cells	Blood	Blood	31049560	GigaScience	Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood	NA
773	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD74, HCST, SRGN, CYBA, ID2"	CD4 T cells	Blood	Blood	31083348	Int J Mol Sci	Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure.	NA
774	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CCL4, GNLY, CST7, PRF1, CCL5"	Natural killer T (NKT) cells	Blood	Blood	31083348	Int J Mol Sci	Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure.	NA
775	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CCR7, CCL4, NKG7, GNLY, TRDC, TRGC1, KLRD1, TYROBP, CST7, PRF1, ZAMA, CTSW"	Natural killer T (NKT) cells	Blood	Blood	31083348	Int J Mol Sci	Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure.	NA
776	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"PTPRC, CD3D, IL7R, NKG7"	Gamma delta T cells	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
777	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRGV9, TRDV2"	Gamma delta T cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
778	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD19"	B cells	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
779	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD19"	B cells	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
780	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LYZ, S100A9, FCER1A"	Dendritic cells	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
781	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LYZ, S100A9, FCER1A"	Dendritic cells	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
782	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, S100A9, FCGR3A"	Monocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
783	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, S100A9, FCGR3A"	Monocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
784	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
785	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
786	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, TRDC, NKG7"	Gamma delta T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
787	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	NKG7	CD8 T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
788	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRC2, KLRF1, FCGR3A, CCL3, TRGC2, CMC1, GZMB, FGFBP2, TYROBP, GZMH, CD63, PLAC8, GNLY, PRF1, TRBC2, GSTP1, NKG7, C12orf75, HOPX, CCL4, SUB1, IFITM1, KLF2, EFHD2, IFITM2"	TCRVdelta1 gammadelta T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
789	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRC1, IL7R, NOSIP, LTB, TRGC1, GZMK, ALOX5AP, TRAC, JUN, CD44, NFKBIA, CD52, ZFP36L2"	TCRVdelta2 gammadelta T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
790	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, TRDC, NKG7"	Gamma delta T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
791	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	NKG7	CD8 T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
792	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRC2, KLRF1, FCGR3A, CCL3, TRGC2, CMC1, GZMB, FGFBP2, TYROBP, GZMH, CD63, PLAC8, GNLY, PRF1, TRBC2, GSTP1, NKG7, C12orf75, HOPX, CCL4, SUB1, IFITM1, KLF2, EFHD2, IFITM2"	TCRVdelta1 gammadelta T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
793	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRC1, IL7R, NOSIP, LTB, TRGC1, GZMK, ALOX5AP, TRAC, JUN, CD44, NFKBIA, CD52, ZFP36L2"	TCRVdelta2 gammadelta T lymphocytes	Blood	Blood	31118283	Proc Natl Acad Sci U S A	Single-cell RNA sequencing unveils the shared and the distinct cytotoxic hallmarks of Human TCRVdelta1 and TCRVdelta2 gammadelta T lymphocytes	GSE128223
794	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Blood	Blood	31413257	Nat Commun	A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing	NA
795	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD19"	B cells	Blood	Blood	31413257	Nat Commun	A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing	NA
796	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	HBA1	Erythrocytes	Blood	Blood	31413257	Nat Commun	A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing	NA
797	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"AZU1, ELANE, MPO, PRTN3"	Myeloid lineage cells	Blood	Blood	31413257	Nat Commun	A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing	NA
798	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, PAX5"	Cluster1 (native B)	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
799	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD27"	Cluster2 (plasmablast)	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
800	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, PRMD1"	Cluster3 (memory B)	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
801	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD38"	Cluster4	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
802	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD19"	Cluster5	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
803	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	TBX21	TH1	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
804	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	GATA3	TH2	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
805	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	RORC	TH17	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
806	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	Foxp3	Treg	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
807	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	BCL6	TFH	Blood	Blood	31235509	J Exp Med	"Loss of the interleukin-6 receptor causes immunodeficiency, atopy, and abnormal inflammatory responses"	NA
808	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD20"	B cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
809	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD20"	B cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
810	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	FCGR3A	CD16 monocytes	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
811	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	FCGR3A	CD16 monocytes	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
812	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD4	CD4 T cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
813	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
814	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	FECR1A	Dendritic cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
815	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
816	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
817	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"CRHBP, EMCN, HLF, AVP"	Hematopoietic stem and progenitor cells	Blood	Blood	32386542	Molecular Cell	Single-Cell Analyses Reveal Megakaryocyte-Biased Hematopoiesis in Myelofibrosis and Identify Mutant Clone-Specific Targets	GSE144568
818	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	HOXA9	Hematopoietic stem and progenitor cells	Tissue	Blood	32470390	Cancer Cell	Extensive Remodeling of the Immune Microenvironment in B Cell Acute Lymphoblastic Leukemia	GSE134759
819	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"RORA, BCL11B, PTGDR2, KLRG1, IL17RB, CRLF2, IL1RL1, IL13"	ILC2	Blood	Blood	31263279	Nat Immunol	c-Kit-positive ILC2s exhibit an ILC3-like signature that may contribute to IL-17-mediated pathologies	GSE124474
820	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"RORC, NFIL3, AHR, IL23R, IL1R1, CSF2, TNF"	ILC3	Blood	Blood	31263279	Nat Immunol	c-Kit-positive ILC2s exhibit an ILC3-like signature that may contribute to IL-17-mediated pathologies	GSE124474
821	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"TBX21, EOMES, CXCR3, IL12RB1, IL12RB2, IL18RAP, IL18R1, KLRD1, KLRC1, KLRF1"	Natural killer T (NKT) cells	Blood	Blood	31263279	Nat Immunol	c-Kit-positive ILC2s exhibit an ILC3-like signature that may contribute to IL-17-mediated pathologies	GSE124474
822	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatocytes	"Arg1, Hamp, Tat"	Hepatocytes	blood	Blood	32447346	Leukemia	An Airway Protection Program Revealed by Sweeping Genetic Control of Vagal Afferents.	NA
823	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"TUBA1B, STMN1"	Act. prolif GZMA CD8 T cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
824	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	NKG7	Act.GNLY CD8 T cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
825	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMA, IL32, CD8A"	Act.GZMA CD8 T cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
826	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	TYROBP	Activated NK cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
827	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"HLA-DRA, CD79A, IGLL5, MS4A1, CD79A, CD79B"	B cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
828	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	SELL	CD62l T cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
829	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LYZ, S100A9"	Monocytes_dendritic cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
830	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
831	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	CD14 monocytes	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
832	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	LYZ	CD14 monocytes	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
833	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
834	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	FCER1A	Dendritic cells	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
835	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	PPBP	Megakaryocytes	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
836	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	GNLY	Natural killer (NK) cells	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
837	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD79A, CD79B"	B cells	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
838	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3D, LDHB, IL7R"	CD4 T cells	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
839	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3D, CD8A"	CD8 T cells	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
840	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LYZ, CCR7"	Dendritic cells	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
841	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD14, CD16, CD16, FCGR3A"	Monocytes	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
842	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, GNLY"	Natural killer (NK) cells	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
843	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3D, NKG7, CD3, CD56"	Natural killer T (NKT) cells	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
844	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"TLR2, FUT4, CCR1, CCR3, PIAS, TRIM22, TRIM38, IRF1, JUNB"	Immature monocytes	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
845	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	31345789	Cancer Discov	Epigenomics and Single-Cell SequencingDefne a Developmental Hierarchy inLangerhans Cell Histiocytosis	NA
846	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD14	Monocytes/macrophages	Blood	Blood	31345789	Cancer Discov	Epigenomics and Single-Cell SequencingDefne a Developmental Hierarchy inLangerhans Cell Histiocytosis	NA
847	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD16"	Intermediate monocytes	Blood	Blood	31917836	Journal of Experimental medicine	Dynamics of Human monocytes and airway macrophages during healthy aging and after transplant	NA
848	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	31405383	Genome Biol	BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes	NA
849	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	CD14+ Monocytes	Blood	Blood	31405383	Genome Biol	BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes	NA
850	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD16	CD16+ Monocytes	Blood	Blood	31405383	Genome Biol	BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes	NA
851	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	CD1c+ Dendritic cells	Blood	Blood	31405383	Genome Biol	BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes	NA
852	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD3D	CD4+ T cells	Blood	Blood	31405383	Genome Biol	BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes	NA
853	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8B	CD8+ T cells	Blood	Blood	31405383	Genome Biol	BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes	NA
854	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	GNLY	NKT cells	Blood	Blood	31405383	Genome Biol	BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes	NA
855	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD25, CD69"	Memory CD8 T cells	Blood	Blood	31413301	Nat Commun	Dissecting the heterogeneity of DENV vaccine-elicited cellular immunity using single-cell RNA sequencing and metabolic profiling	GSE132950
856	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD38	Vaccine-reactive CD8+ T cells	Blood	Blood	31413301	Nat Commun	Dissecting the heterogeneity of DENV vaccine-elicited cellular immunity using single-cell RNA sequencing and metabolic profiling	GSE132950
857	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"BNAK1, CD79B, CD22, MS4A1"	B cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134811
858	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"BNAK1, CD79B, CD22, MS4A1"	B cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134811
859	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, CMA1, KIT"	Mast cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134814
860	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, CMA1, KIT"	Mast cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134814
861	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CCL3, ZFP36, IER2, JUNB, MT2A, FOS, TSPYL2, NR4A2, NFKBIA, PTGDS"	Activated NK cells	Blood	Blood	31477722	Nat Commun	Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome	GSE130430
862	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRC2, CD3E, CD52, S100A6, CCL5, VIM, TMIGD2, CORO1A, CD7, KLRD1"	Adaptive Natural killer (NK) cells	Blood	Blood	31477722	Nat Commun	Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome	GSE130430
863	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"LTB, IL7R, GZMK, XCL1, LST1, CD44, SOX4, SELL, SPINK2, XCL2"	CD56bright Natural killer (NK) cells	Blood	Blood	31477722	Nat Commun	Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome	GSE130430
864	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"IFIT2, IFIT3, CCL3, PMAIP1, CCL3L1, TNF, CCL3L3, CCL4, NFKBIZ, CCL4L1"	Inflamed Natural killer (NK) cells	Blood	Blood	31477722	Nat Commun	Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome	GSE130430
865	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"PRF1, FCGR3A, SPON2, MYOM2, ACTB, GZMA, GZMB, S100A11, LGALS1, UCP2"	Mature Natural killer (NK) cells	Blood	Blood	31477722	Nat Commun	Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome	GSE130430
866	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"WDR74, TMEM107, NORD3A, RP11-386I14.4, LINC00910, RNU12, SNORD3D, SNORD3B-2, C12orf57, SNORD3B-1"	Terminal Natural killer (NK) cells	Blood	Blood	31477722	Nat Commun	Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome	GSE130430
867	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GZMK, XCL1, CMC1, XCL2, CD44, IFRD1, RP11-277L2.4, PIK3R1, CLDND1, KLRC1"	Transitional Natural killer (NK) cells	Blood	Blood	31477722	Nat Commun	Heterogeneity of human bone marrow and blood natural killer cells defined by single-cell transcriptome	GSE130430
868	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD24, CD72"	B cells	Cell line	Blood	31484734	J Immunol	Cutting Edge: Ig H Chains Are Sufficient to Determine Most B Cell Clonal Relationships	NA
869	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amniotic ectoderm cells	CDX2	Amniotic ectoderm and posterior primitive streak	Cell line	Blood	31511693	Nature	Controlled modelling of Human epiblast and amnion development using stem cells	GSE134571
870	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amniotic ectoderm-like cells	TFAP2A	Amniotic ectoderm-like cells	Cell line	Blood	31511693	Nature	Controlled modelling of Human epiblast and amnion development using stem cells	GSE134571
871	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD57, CD38"	CD8 effector T cells	Cell line	Blood	31591579	Nat Methods	Exploring single-cell data with deep multitasking neural networks.	"Cytobank, with accession number 82023."
872	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"Cd68, Cd37"	Macrophages	Blood	Blood	29747686	Genome Biol	"GiniClust2:a cluster-aware, weighted ensemble clustering method for cell-type detection."	SRP073767
873	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD5, CD19, CD22, MS4A1"	B cells	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
874	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"LY9, SLAMF7, IL7RA, MME"	Common lymphoid	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
875	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"TFRC, HBG1, HBG2, CD59, GYPA"	Erythrocytes	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
876	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"CCR3, ANPEP, FCGR3A, ITGB2, ITGAM, MPO, CEACAM1, SELL, ADGRE1, LAMP1, LAMP2, CEACAM8"	Granulocytes	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
877	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD34, CD38, CD45RA"	Lymphoid-primed multipotentprogenitors(lmpp)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
878	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD34, CD38, CD45RA"	Lymphoid-primed multipotentprogenitors(lmpp)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
879	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD34, CD38, CD45RA"	Lymphoid-primed multipotentprogenitors(lmpp)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
880	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD34, CD38, CD45RA"	Lymphoid-primed multipotentprogenitors(lmpp)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
881	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD34, CD38, CD45RA"	Lymphoid-primed multipotentprogenitors(lmpp)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
882	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD34, CD38, CD45RA"	Lymphoid-primed multipotentprogenitors(lmpp)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
883	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"CD34, CD38, CD45RA, CD123, CD135"	Megakaryocyte-erythrocytes progenitors	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
884	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"CD34, CD38, CD45RA, CD123, CD135"	Megakaryocyte-erythrocytes progenitors	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
885	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"CD34, CD38, CD45RA, CD123, CD135"	Megakaryocyte-erythrocytes progenitors	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
886	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD33, CD14, CD36, CD68, CD163"	Monocytes/macrophages	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
887	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, GZMB, CD8A, FCGR3A, KIR2DL4, NCAM1, NCR1"	Natural killer (NK) cells	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
888	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD16, CD36"	Macrophages	Blood	Blood	30833276	Blood Adv	Identification of enhancer of mRNA decapping 4 as a novel fusion partner of MLL in acute myeloid leukemia	NA
889	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD19"	B cells	Blood	Blood	31630146	Cytogenet Genome Res	Single-Cell Sequencing Reveals the Relationship between Phenotypes and Genotypes of Klinefelter Syndrome	GSE136353
890	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD83, CD86, CD74, CD33"	Dendritic cells	Blood	Blood	31630146	Cytogenet Genome Res	Single-Cell Sequencing Reveals the Relationship between Phenotypes and Genotypes of Klinefelter Syndrome	GSE136353
891	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	31630146	Cytogenet Genome Res	Single-Cell Sequencing Reveals the Relationship between Phenotypes and Genotypes of Klinefelter Syndrome	GSE136353
892	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CD68"	Macrophages	Blood	Blood	31630146	Cytogenet Genome Res	Single-Cell Sequencing Reveals the Relationship between Phenotypes and Genotypes of Klinefelter Syndrome	GSE136353
893	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, VPREB1, VPREB3, EBF1"	B cell progenitors	Blood	Blood	31697810	Blood	Single-cell analysis of bone marrow_derived CD341 cells from children with sickle cell disease and thalassemia	GSE133181
894	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	"CD34, CD90"	Hematopoietic stem cells	Blood	Blood	31697810	Blood	Single-cell analysis of bone marrow_derived CD341 cells from children with sickle cell disease and thalassemia	GSE133181
895	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
896	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD16	Macrophages	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
897	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD16	Macrophages	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
898	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	LYZ	Macrophages	Blood	Blood	31968262	Cell Rep	"Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics"	PRJNA512111
899	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19"	B cells	Blood	Blood	31719197	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	NA
900	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	HBA1	Erythrocytes	Blood	Blood	31719197	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	NA
901	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, FCGR3A"	Monocytes	Blood	Blood	31719197	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	NA
902	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	KLRF1	Natural killer (NK) cells	Blood	Blood	31719197	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	NA
903	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD34, CD38, CD45RA, CD123, CD135"	Mep and granulocyte-macrophage progenitors(gmp)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
904	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	31739806	Genome Biol	Assessment of computational methods for the analysis of single-cell ATAC-seq data	NA
905	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	S100A12	Monocytes	Blood	Blood	31739806	Genome Biol	Assessment of computational methods for the analysis of single-cell ATAC-seq data	NA
906	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"MARCO, ITGAM, ADGRE1"	Macrophages	Blood	Blood	32723919	mBio	"Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipelineï¼_athways to Reservoirs and HIV-Associated Comorbidities"	GSE153958
907	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	31792411	Nat Biotechnol	Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia	GSE139369
908	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD8A	Cytotoxic T cells	Blood	Blood	31792411	Nat Biotechnol	Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia	GSE139369
909	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	31794001	Bioinformatics	schex avoids overplotting for large single-cell RNA-sequencing datasets	NA
910	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ, S100A9"	Mature monocytes	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
911	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	31827280	Nature	A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1	NA
912	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Mature monocytes	Blood	Blood	31827280	Nature	A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1	NA
913	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"PF4 , PPBP, PLA2G12A."	Megakaryocyte progenitors	Blood	Blood	29361178	Nucleic Acids Res	dropClust:efficient clustering of ultra-large scRNA-seq data	GSE63473
914	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD38, CD27"	Memory B cells	Blood	Blood	31839985	Cell Discov	More than one antibody of individual B cells revealed by single-cell immune profiling	GSE111360
915	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD38"	Naive B cells	Blood	Blood	31839985	Cell Discov	More than one antibody of individual B cells revealed by single-cell immune profiling	GSE111360
916	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD62L, CCR7"	Memory T cells	Blood	Blood	30397350	Nature Immunology	Human retinoic acid_regulated CD161+ regulatory T cells support wound repair in intestinal mucosa	"GSE40918, GSE45975"
917	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD95	Memory T cells	Blood	Blood	33046887	Nat Immunol	Two subsets of stem-like CD8 + memory T cell progenitors with distinct fate commitments in Humans	GSE120575
918	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD45RO"	Memory T helper	Blood	Blood	32255672	Am J Respir Crit Care Med	Functional Genomics of the Pediatric Obese Asthma Phenotype Reveal Enrichment of Rho-GTPase Pathways	NA
919	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
920	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NCAM1	Natural killer (NK) cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
921	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD34"	Monocyte progenitors	Blood	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
922	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CAV1, CLDN5"	Endothelial cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
923	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CAV1, CLDN5"	Endothelial cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
924	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"MT-CO2, MT-CO3, MT-ATP6, MT-ND1, TSPYL2, AC016831.7, SPOCK2, RP11-138A9.1, KLF6, TRAC"	Monocytes/T cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
925	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"HLA-DPA1, HLA-DPB1, CD74, HLA-DRA, HLA-DMA, HLA-DRB1, HLA-DQA1, HLA-DQB1, AREG, PTGDS"	Monocytes/T cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
926	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, CSF3R, SPI1"	Myeloid cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
927	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, CSF3R, SPI1"	Myeloid cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
928	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3E, GATA3"	Natural killer T (NKT) cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
929	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3E, GATA3"	Natural killer T (NKT) cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
930	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Blood	Blood	31792411	Nat Biotechnol	Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia	GSE139369
931	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Phagocytes	"CADM1, CLEC9A, LILRA4, SPIB, FCER1A, CLEC10A, OSCAR, MRC1"	Mononuclear phagocytes	Cell line	Blood	30110645	Cell Rep	Large-Scale Human Dendritic Cell Differentiation Revealing Notch-Dependent Lineage Bifurcation and Heterogeneity	"GSE108546, GSE115405"
932	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Phagocytes	"HLA-DRB1, HLA-DQA1, LYZ"	Mononuclear phagocytes	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134812
933	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Phagocytes	"HLA-DRB1, HLA-DQA1, LYZ"	Mononuclear phagocytes	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134812
934	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3D, CD8A"	CD8 T cells	Blood	Blood	31915375	Nature	Clonally expanded CD8 T_ells patrol the cerebrospinal fluid in Alzheimer's disease	GSE134578
935	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"NKG7, GZMA, GZMH, GZMK"	Natural killer T (NKT) cells	Blood	Blood	31915375	Nature	Clonally expanded CD8 T_ells patrol the cerebrospinal fluid in Alzheimer's disease	GSE134578
936	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD34, CD38, CD45RA, CD49f, Lin"	Multipotent progenitors (mpps)	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
937	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	CD31	Invariant Natural killer T (NKT) cells	Blood	Blood	31935280	Blood	High-parametric evaluation of human invariant natural killer T cells to delineate heterogeneity in allo- and autoimmunity	"PRJNA563899, PRJNA565590"
938	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	CD31	Invariant Natural killer T (NKT) cells	Blood	Blood	31935280	Blood	High-parametric evaluation of human invariant natural killer T cells to delineate heterogeneity in allo- and autoimmunity	"PRJNA563899, PRJNA565590"
939	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	CD31	Invariant Natural killer T (NKT) cells	Blood	Blood	31935280	Blood	High-parametric evaluation of human invariant natural killer T cells to delineate heterogeneity in allo- and autoimmunity	"PRJNA563899, PRJNA565590"
940	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, MS4A1, LINC00926, IGHM, HLA-DQA1, TCL1A, CD79B, HLA-DQB1, HLA-DRA, CD74"	MS4A1_positive B cells	Blood	Blood	31966074	Oncol Lett	Tracking the important role of JUNB in hepatocellular carcinoma by single-cell sequencing analysis	GSE111360
941	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, CST3, TYROBP, S100A6, LYZ, S100A12, S100A4, MNDA, AIF1, CSTA, SERPINA1, FCN1, LST1, S100A9, FCER1G, CTSS, CD14, VCAN, GRN, PSAP, CCL3"	Monocytes	Blood	Blood	31966074	Oncol Lett	Tracking the important role of JUNB in hepatocellular carcinoma by single-cell sequencing analysis	GSE111360
942	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GZMB, FGFBP2, KLRD1, GNLY, SPON2, PRF1, GZMA, CST7, CTSW, CCL5, IFITM1, CD8A, KLRB1, NKG7"	Natural killer (NK) cells	Blood	Blood	31966074	Oncol Lett	Tracking the important role of JUNB in hepatocellular carcinoma by single-cell sequencing analysis	GSE111360
943	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, TCL1A, IGHM, IGHD"	Naive B cells	Blood	Blood	31968262	Cell Rep	"Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics"	PRJNA512111
944	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, CD27"	Memory B cells	Blood	Blood	31968262	Cell Rep	"Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics"	PRJNA512111
945	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, AICDA, CD86."	Activated memory B cell	Blood	Blood	31968262	Cell Rep	"Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics"	PRJNA512111
946	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	CD3	Lymphocytes	Blood	Blood	31974170	Cancer Discov	Monocytic Subclones Confer Resistance to Venetoclax-Based Therapy in Patients with Acute Myeloid Leukemia	GSE143363
947	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD11b, CD33"	Monocytes	Blood	Blood	31974170	Cancer Discov	Monocytic Subclones Confer Resistance to Venetoclax-Based Therapy in Patients with Acute Myeloid Leukemia	GSE143363
948	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD34, CD33"	Primitive myeloid cells	Blood	Blood	31974170	Cancer Discov	Monocytic Subclones Confer Resistance to Venetoclax-Based Therapy in Patients with Acute Myeloid Leukemia	GSE143363
949	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20"	B cells	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
950	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20"	B cells	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
951	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ"	Monocytes	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
952	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ"	Monocytes	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
953	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NCR1	Natural killer (NK) cells	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
954	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NCR1	Natural killer (NK) cells	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
955	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, BANK1, IGHD, LINC00926, MS4A1"	B cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
956	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, BANK1, IGHD, LINC00926, MS4A1"	B cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
957	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"PF4, PPBP"	Megakaryocytes	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
958	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"PF4, PPBP"	Megakaryocytes	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
959	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, PRF1, KLRD1, GZMA, HOPX, CST7"	Natural killer (NK) cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
960	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, PRF1, KLRD1, GZMA, HOPX, CST7"	Natural killer (NK) cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
961	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	CD34	Hematopoietic stem cells	Blood	Blood	32042039	Sci Rep	An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples	NA
962	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD27, IGD, IGHG2, IGHE"	Memory B cells	Blood	Blood	32042039	Sci Rep	An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples	NA
963	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Blood	Blood	32042039	Sci Rep	An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples	NA
964	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD27, IGD"	Naive B cells	Blood	Blood	32042039	Sci Rep	An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples	NA
965	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	IGLL1	Pro-pre-b cells	Blood	Blood	32042039	Sci Rep	An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples	NA
966	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"PIK3IP1, RPL36A, CCR7, NELL2"	Naive T cells	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
967	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"LEF1, TCF7, CCR7"	Naive T cells	Blood	Blood	32042196	Nat Med	Benjamin P Fairfax	EGAS00001004081
968	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CCR7"	Naive T cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
969	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD45RA"	Naive T helper	Blood	Blood	32255672	Am J Respir Crit Care Med	Functional Genomics of the Pediatric Obese Asthma Phenotype Reveal Enrichment of Rho-GTPase Pathways	NA
970	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45RA, CD19, HLA-DR"	B cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
971	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45RA, CD19, HLA-DR"	B cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
972	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3, CD4"	CD4 T cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
973	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3, CD4"	CD4 T cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
974	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3, CD8"	CD8 T cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
975	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3, CD8"	CD8 T cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
976	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD11b, CD11c, CD14, HLA-DR"	Monocytes	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
977	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD11b, CD11c, CD14, HLA-DR"	Monocytes	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
978	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD16, CD56"	Natural killer (NK) cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
979	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD16, CD56"	Natural killer (NK) cells	Blood	Blood	32070398	Genome Biology	Protein velocity and acceleration from single-cell multiomics experiments	NA
980	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
981	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3E, IL7R"	CD4 T cells	Blood	Blood	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
982	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3E, CD8A, IL7R"	CD8 T cells	Blood	Blood	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
983	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD68, S100A4"	Monocytes	Blood	Blood	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
984	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Blood	Blood	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
985	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MS4A1, CD79A, CD79B, BLNK"	B cells	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
986	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ"	CD14 monocytes	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
987	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CD3D, CD4, CTLA4"	CD4 T cells	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
988	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, GZMB, CD3D, CD8B"	CD8 T cells	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
989	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"IL3RA, CLEC4C, NRP1, FCER1A, CST3"	Dendritic cells	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
990	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD8A, IL7R, CD3D"	IL7R CD4 T cells	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
991	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
992	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"FCGR3A, NCAM1, KLRB1, KLRC1, KLRD1, KLRF1, GNLY, NKG7"	Natural killer (NK) cells	Blood	Blood	32103029	Sci Rep	Single-cell Transcriptome Mapping Identifes Common and Cell-type Specifc Genes Afected by Acute Delta9-tetrahydrocannabinol in Humans	GSE130228
993	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"RETN, S100A8, S100A9, S100A12"	Activated neutrophils	Cell line	Blood	30949159	Front Microbiol	Single-Cell Transcriptome Analysis of CD34+ Stem Cell-Derived Myeloid Cells infected with Human Cytomegalovirus.	GSE124334
994	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	FCGR3B	Neutrophils	Blood	Blood	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
995	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"FCGR3B, CXCL8, LCN2"	Neutrophils	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
996	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"G0S2, RSAD2, IL1R2, IL1RN"	Neutrophils	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
997	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"IL7R, CAMP"	Neutrophils	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
998	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"GNS, VNN1, ITGAM, C3AR1, CLEC5A, ADAM8, CD58, CR1, FCER1G, MGAM, MMP8, MMP9, SIGLEC5, VNN2, DYSF, LILRB3, TLR8, CCR"	Band neutrophils	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
999	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD16	Nonclassical monocytes	Blood	Blood	31917836	Journal of Experimental medicine	Dynamics of Human monocytes and airway macrophages during healthy aging and after transplant	NA
1000	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"LY86, CCR2"	B cells	Blood	Blood	32251450	PLoS Pathog	Integrating GWAS with bulk and single-cell RNA-sequencing reveals a role for LY86 in the anti-Candida host response.	NA
1001	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	CXCR3	Natural killer (NK) cells	NA	Blood	32257537	Aging Dis	Transplantation of ACE2 Mesenchymal Stem Cells Improves the Outcome of Patients with COVID-19 Pneumonia.	NA
1002	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD14, CD11c, CD11bmid"	Regulatory dendritic cell	NA	Blood	32257537	Aging Dis	Transplantation of ACE2 Mesenchymal Stem Cells Improves the Outcome of Patients with COVID-19 Pneumonia.	NA
1003	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CDD19, TCL1A, FOS, CD69, CXCR4, DUSP1, IL4R, BTG1, FCER2, CD72, TUBA1A"	Naive B cells	Blood	Blood	32315970	EBioMedicine	Transcriptional and clonal characterization of B cell plasmablast diversity following primary and secondary natural DENV infection	GSE145307
1004	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CDD19, COTL1, CD82, LTB1, AIM2, BANK1, MS4A11, GPR183, BLK, SCIMP, HLA-DPB11"	Memory B cells	Blood	Blood	32315970	EBioMedicine	Transcriptional and clonal characterization of B cell plasmablast diversity following primary and secondary natural DENV infection	GSE145307
1005	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CDD19, JCHAIN, MZB1, HSP90B1, XBP1, ITM2C, IFI27, TXNDC5, SEC11C, PPIB, CD38"	Plasmablasts	Blood	Blood	32315970	EBioMedicine	Transcriptional and clonal characterization of B cell plasmablast diversity following primary and secondary natural DENV infection	GSE145307
1006	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CDD19, RRM2, HMGB2, H2AFZ, STMN1, TYMS, MKI67, UBE2C, MANF1, SMC4, PTTG1"	Pre-plasmablasts	Blood	Blood	32315970	EBioMedicine	Transcriptional and clonal characterization of B cell plasmablast diversity following primary and secondary natural DENV infection	GSE145307
1007	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"PAX5, CD79A, CD22, FCRL1, SERPINE1"	B cells	Blood	Blood	32366930	Clinical Trial	DNA methylation and gene expression signatures are associated with ataxia-telangiectasia phenotype	GSE142844
1008	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1009	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3E, CD4"	CD4 T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1010	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3E, CD4"	CD4 T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1011	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3E, CD4"	CD4 T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1012	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3E, CD4"	CD4 T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1013	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMB, GNLY, PRF1"	CD8 cytotoxic T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1014	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	GZMK	CD8 effector memory T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1015	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCR7, LEF1, TCF7"	CD8 naive T cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1016	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, CD1C, FCGR3A"	Myeloid cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1017	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCAM1, KLRF1, KLRC1, KLRD1"	Natural killer (NK) cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1018	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCAM1, KLRF1, KLRC1, KLRD1"	Natural killer (NK) cells	Blood	Blood	32377375	Cell Discov	Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing.	NA
1019	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"EPOR, KLF1, TFR2, CSF2RB, APOE, APOC1, CNRIP1"	Erythrocytes	Blood	Blood	32386542	Molecular Cell	Single-Cell Analyses Reveal Megakaryocyte-Biased Hematopoiesis in Myelofibrosis and Identify Mutant Clone-Specific Targets	GSE144568
1020	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"VPREB1, JCHAIN, CD22, IGHD, LTB"	Lymphocytes	Blood	Blood	32386542	Molecular Cell	Single-Cell Analyses Reveal Megakaryocyte-Biased Hematopoiesis in Myelofibrosis and Identify Mutant Clone-Specific Targets	GSE144568
1021	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"MPIG6B, PF4, GP9, VWF, SELP"	Megakaryocytes	Blood	Blood	32386542	Molecular Cell	Single-Cell Analyses Reveal Megakaryocyte-Biased Hematopoiesis in Myelofibrosis and Identify Mutant Clone-Specific Targets	GSE144568
1022	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"ELANE, AZU1, PRTN3, CFD, MPO, CSF1R, CST7, CTSG"	Myeloid cells	Blood	Blood	32386542	Molecular Cell	Single-Cell Analyses Reveal Megakaryocyte-Biased Hematopoiesis in Myelofibrosis and Identify Mutant Clone-Specific Targets	GSE144568
1023	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"NKG7, CD8A, CD27"	Activated CD8 T cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1024	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, MS4A1"	B cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1025	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3D, CCR7, CD8A"	CD8 T cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1026	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD11c	Dendritic cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1027	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD11c	Dendritic cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1028	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD22, FcER2, CD79A, MS4A1"	Mature B cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1029	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3D, CCR7, S100A4, CREM"	Memory CD4 T cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1030	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD16"	Monocytes	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1031	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD16"	Monocytes	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1032	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3D, CCR7"	Naive CD4 T cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1033	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Blood	Blood	32402279	Cell Rep	Systemic Type I IFN Inflammation in Human ISG15 Deficiency Leads to Necrotizing Skin Lesions	NA
1034	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"CD38, CD138"	Plasma cells	Tissue	Blood	30523328	Nat Med	Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma	GSE117156
1035	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"CD38, CD138"	Plasma cells	Tissue	Blood	30523328	Nat Med	Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma	GSE117156
1036	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"CD38, CD138"	Plasma cells	Tissue	Blood	30523328	Nat Med	Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma	GSE117156
1037	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"TNFRSF17, MZB1"	Plasma cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134810
1038	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"TNFRSF17, MZB1"	Plasma cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134810
1039	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"CD19, CD38"	Plasma cells	Blood	Blood	31839985	Cell Discov	More than one antibody of individual B cells revealed by single-cell immune profiling	GSE111360
1040	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"CD27, IGD, CD38, SDC1, IGHG2, IGHA1"	Plasma cells	Blood	Blood	32042039	Sci Rep	An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples	NA
1041	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Blood	Blood	32415257	Sci Rep	Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity.	GSE132509
1042	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	HBA1	Erythrocytes	Blood	Blood	32415257	Sci Rep	Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity.	GSE132509
1043	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CST3	Monocytes	Blood	Blood	32415257	Sci Rep	Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity.	GSE132509
1044	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, HLA-DQA1, MS4A1"	PreB Cells	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1045	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, HLA-DQA1, IGHD, MS4A1"	FO B Cells	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1046	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	NA	"IL5, CLEC9A"	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1047	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD4, S100A9, CD14"	CD14 Monocytes	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1048	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD4	FCGR3A Monocytes	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1049	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7, FCGR3A, NCAM1"	Natural killer (NK) cells	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1050	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"SDC1, SLAMF7, TNFRSF17"	Plasma cells	Tissue	Blood	32471990	Nat Commun	Evolution and structure of clinically relevant gene fusions in multiple myeloma	PRJNA627897
1051	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGHA1, JCHAIH, IGLC2, IGHM, MZB1, PDIA4, SEC11C"	Plasma cells	Blood	Blood	32707001	Nucleic Acid Ther	Efficiency and Target Derepression of Anti-miR-92aï¼ Results of a First in Human Study	NA
1052	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	MZB1	Plasma cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1053	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"MYCN, PBX1"	Stem cells	Cell line	Blood	32422235	Gene	Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia.	"GSE145071, GSE145106, GSE145166, GSE145211, GSE145279, GSE145410"
1054	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"SPINK2, SLAMF7"	Plasma cells	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1055	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmablasts	"CD38, MKI67"	Plasmablasts	Cell line	Blood	31484734	J Immunol	Cutting Edge: Ig H Chains Are Sufficient to Determine Most B Cell Clonal Relationships	NA
1056	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmablasts	"CD79A, MZB1, IGJ, IRF7, ISG15, IFI6"	Plasmablasts/plasma cells (pb/pc)	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1057	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"LILRA4, SERPINF1"	Plasmacytoid dentritic cells	Blood	Blood	28854175	Nat Biotechnol	Multiplexed quantification of proteins and transcripts in single cells	GSE100501
1058	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"CD34, CD38, CD10-, CD45RA, CD123"	Plasmacytoid dentritic cells	Blood	Blood	29706549	Cell	Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.	GSE96772
1059	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IGJ, IRF8, GZMB, SEC61B, C12orf75, CCDC50, TCF4, LILRA4, ITM2C, IRF7, TCL1A, ALOX5AP, UGCG, PLD4, BCL11A, PPP1R14B, MZB1, TXN, SERPINF1, CLIC3, TSPAN13, LTB, VIMP, SPIB, SMPD3, LRRC26, OFD1, PTPRS, SOX4, SCT"	Plasmacytoid dentritic cells	Blood	Blood	30068984	Sci Rep	High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma	GSE107747
1060	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	IL3RA	Plasmacytoid dentritic cells	Blood	Blood	31345789	Cancer Discov	Epigenomics and Single-Cell SequencingDefne a Developmental Hierarchy inLangerhans Cell Histiocytosis	NA
1061	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IRF7, GZMB, LILRA4"	Plasmacytoid dentritic cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134813
1062	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IRF7, GZMB, LILRA4"	Plasmacytoid dentritic cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134813
1063	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"S100A8, LYZ, CST3, CD1C, FCER1G, GZMB, MZB1, IGJ, LILRA4, IRF7"	Plasmacytoid dentritic cells	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1064	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	CLEC4C	Plasmacytoid dentritic cells	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1065	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	LILRA4	Plasmacytoid dentritic cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1066	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	IL3RA	Plasmacytoid dentritic cells	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1067	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	PPBP	Platelet	Blood	Blood	31311800	Diabetes	Early Detection of Peripheral Blood Cell Signature in Children Developing beta-Cell Autoimmunity at a Young Age	NA
1068	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	PPBP	Platelet	Blood	Blood	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
1069	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	PPBP	Platelet	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1070	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	PPBP	Platelet	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1071	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	PPBP	Platelet	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1072	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	HDC	Platelet	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
1073	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MME"	B cells	Tissue	Blood	32470390	Cancer Cell	Extensive Remodeling of the Immune Microenvironment in B Cell Acute Lymphoblastic Leukemia	GSE134759
1074	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	HBA1	Erythrocytes	Tissue	Blood	32470390	Cancer Cell	Extensive Remodeling of the Immune Microenvironment in B Cell Acute Lymphoblastic Leukemia	GSE134759
1075	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD68	Myeloid cells	Tissue	Blood	32470390	Cancer Cell	Extensive Remodeling of the Immune Microenvironment in B Cell Acute Lymphoblastic Leukemia	GSE134759
1076	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"PTPRC, CD38, CD34"	Progenitor cells	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1077	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"FUT4, CD34"	Progenitor cells	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1078	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, GZMK, FOSB"	Cluster 1	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1079	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, C1orf56, CDC42SE1, B4GALT1"	Cluster 2	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1080	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, KLRD1, GZMH"	Cluster 3	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1081	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, SELL, CD79A"	Cluster 4	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1082	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, CCL3L1, CCL4L2, CCL20, CCL3L3, SPRY1, CCL4L1, IL23R"	Cluster 1	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1083	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, IL4, IL13, XCL1"	Cluster 2	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1084	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, GZMB, KLRD1, GZMH"	Cluster 3	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1085	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, GEM, MT2A, CD200"	Cluster 4	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1086	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3, CD1dPBS57, DUSP1, DJB1, TXNIP"	Cluster 5	Blood	Blood	32528956	Frontiers in Cell and Developmental Biology	Single-Cell RNA-Seq Analysis Uncovers Distinct Functional Human NKT Cell Sub-Populations in Peripheral Blood.	GSE128243
1087	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"HLA-DQB1, CD79A, CD74, IGKC, HLA-DRA, IGLC2, HLA-DPB1, IGHM, HLA-DRB1, IGHA1"	B cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1088	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A9, S100A8, S100A12, LYZ, LGALS1, TSPO, CTSD, S100A6, CSTA, RETN"	CD14 monocytes	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1089	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"TIMP1, G0S2, CST3, TYROBP, AIF1, CTSS, THBS1, FCN1, SNHG15, MAP3K8"	CD14 monocytes	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1090	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, S100A12, MPT, RETN, CTSD, S100P, LGALS1, BCL2A1, GLUL, CXCL8"	CD14 monocytes	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1091	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"PPBP, GNG11, MAP3K8, SLC25A37, THBS1, HIF1A, G0S2, CLEC7A, SOD2, VCAN"	CD14 monocytes	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1092	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"IFITM2, IFITM3, LILRA1, LST1, COTL1, C10orf54, RHOC, IRF7, PSAP, CD68"	CD16 monocytes	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1093	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CCR7, PIK3IP1, LEPROTL1, RPS6, SARAF, SOCS3, RPS12, IL7R, RPLP0, RPSA"	CD4 T cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1094	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"RPS6, SARAF, LEPROTL1, CCR7, CD6, IL7R, PIK3IP1, LTB, SPOCK2, ZFP36L2"	CD4 T cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1095	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CMC1, DUSP2, GZMK, CCL5, CD8A, CD3D, JUN, APOBEC3G, CD3E, TRBC2"	CD8 T cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1096	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"PF4, PPBP, GNG11, GP9, ITGA2B, SDPR, HIST1H2AC, RGS18, TSC22D1, ACRBP"	Megakaryocytes	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1097	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7, GZMB, CCL3, FGFBP2, CTSW, KLRB1, SPON2, CD7, CCL4"	Natural killer (NK) cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1098	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"GZMH, GNLY, NKG7, CCL5, CCL4, FGFBP2, CST7, CMC1, GZMA, KLRB1"	Natural killer T (NKT) cells	Blood	Blood	32554932	JCI Insight	Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome	GSE151263
1099	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroendocrine cells	"CGRP, ASCL1, NEUROD1, SYP, MYC, GRP, ISM1, HES6, DLL3, MYCL"	Pulmonary neuroendocrine cells	NA	Blood	30737256	J Exp Med	Generation of pulmonary neuroendocrine cells and SCLC-like tumors from Human embryonic stem cells	NA
1100	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ, VCAN, FCN1"	CD14 monocytes	Blood	Blood	32614485	FASEB J	Omega-3 fatty acids increase OXPHOS energy for immune therapy of Alzheimer disease patients	NA
1101	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	32614485	FASEB J	Omega-3 fatty acids increase OXPHOS energy for immune therapy of Alzheimer disease patients	NA
1102	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"GYPA, KLF1"	Erythrocytes	Cell line	Blood	32614947	Blood	Single-cell analyses and machine learning define hematopoietic progenitor and HSC-like cells derived from Human PSCs	GSM3993426
1103	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"AZU1, PRNT3"	Granulocytes	Cell line	Blood	32614947	Blood	Single-cell analyses and machine learning define hematopoietic progenitor and HSC-like cells derived from Human PSCs	GSM3993426
1104	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"GP9, PF4"	Megakaryocytes	Cell line	Blood	32614947	Blood	Single-cell analyses and machine learning define hematopoietic progenitor and HSC-like cells derived from Human PSCs	GSM3993426
1105	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCR7, CD45RA, CD28, CD95, Perforin, GzmB, CXCR5, CD103, CD49a, PD-1, TIGIT, 2B4, CD39, Tim-3, Lag-3, CD38, Ki-67, CD25"	CD8 T cells	Blood	Blood	32620560	Sci Immunol	TOX is expressed by exhausted and polyfunctional Human effector memory CD8 + T cells	GSE148234
1106	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCR7, CD45RA, CD28, Perforin, GzmB, CD38, PD-1, TIGIT, 2B4, CD39, Tim-3, Lag-3"	TCF-1 CD8 T cells	Blood	Blood	32620560	Sci Immunol	TOX is expressed by exhausted and polyfunctional Human effector memory CD8 + T cells	GSE148234
1107	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"LYVE1, CD14, FCGR2B, CD36, CD54, STAB1, STAB2, CLEC1B, FVIII, MRC1, GATA4"	Liver sinusoidal endothelial cells (LSECs)	Cell line	Blood	32640183	Cell Stem Cell	Generation of Functional Liver Sinusoidal Endothelial cellss from Human Pluripotent Stem-Cell- Derived Venous Angioblasts	NA
1108	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	PDGFRB	Fibroblasts	Cell line	Blood	32640183	Cell Stem Cell	Generation of Functional Liver Sinusoidal Endothelial cellss from Human Pluripotent Stem-Cell- Derived Venous Angioblasts	NA
1109	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"GZMA, GZMB, PRF1, GNLY, GZMH, GZMM"	Natural killer T (NKT) cells	Cell line	Blood	32649887	Cancer Cell	Immunogenomic Landscape of Hematological Malignancies	NA
1110	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1111	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ"	CD14 monocytes	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1112	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CD8A"	CD4 T cells	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1113	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1114	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1115	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1116	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7, CD8A"	Natural killer (NK) cells	Blood	Blood	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
1117	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Red cells	"HBA1, HBB, HBD, HBA2, AHSP, SNCA, SLC25A37, UBB, HBM, ALAS2, CA1, IFI27, BPGM, GYPC, BNIP3L, SLC25A39, DCAF12, DAZAP2, MKRN1, TCEB2, CDC42, HEMGN, FAM46C, NFKBIZ, GMPR, C19orf43, FAM210B, CTSD, SELENBP1, OST4"	Red blood cells	Blood	Blood	30068984	Sci Rep	High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma	GSE107747
1118	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL2RA, IL7R, FOXP3"	Regulatory T cells (Treg)	Blood	Blood	30397350	Nature Immunology	Human retinoic acid_regulated CD161+ regulatory T cells support wound repair in intestinal mucosa	"GSE40918, GSE45975"
1119	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, FOXP3"	Regulatory T cells (Treg)	Blood	Blood	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
1120	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"HSPE1, CAPG"	Regulatory T cells (Treg)	Cell line	Blood	31337116	Int J Mol Sci	Unravelling the Role of Trophoblastic-Derived Extracellular Vesicles in Regulatory T Cell Differentiation	NA
1121	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, Foxp3"	Regulatory T cells (Treg)	Cell line	Blood	31591579	Nat Methods	Exploring single-cell data with deep multitasking neural networks.	"Cytobank, with accession number 82023."
1122	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, TNFRSF4, IL2RA, IKZF2, TIGIT"	Regulatory T cells (Treg)	Blood	Blood	32783915	Cell	Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer	GSE150877
1123	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD25"	Regulatory T helper	Blood	Blood	32255672	Am J Respir Crit Care Med	Functional Genomics of the Pediatric Obese Asthma Phenotype Reveal Enrichment of Rho-GTPase Pathways	NA
1124	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"GAN15, IGLC7, TCL1B, IGLC6, JUN, HIST1H1C, HSP4, GADD45B, VPREB1, FOS"	B cells	Tissue	Blood	32692727	JCI Insight	Risk-associated alterations in marrow T cells in pediatric leukemia	GEO GSE154109
1125	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	AML cells	"MPO, ITM2A, CFD, CKB, S100A12, PRTN3, AZU1, TRH"	AML cells	Tissue	Blood	32692727	JCI Insight	Risk-associated alterations in marrow T cells in pediatric leukemia	GEO GSE154109
1126	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGLC3, IGHG1, IGHD, VPREB3"	B cells	Tissue	Blood	32692727	JCI Insight	Risk-associated alterations in marrow T cells in pediatric leukemia	GEO GSE154109
1127	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"VCAN, MNDA"	Myeloid cells	Tissue	Blood	32692727	JCI Insight	Risk-associated alterations in marrow T cells in pediatric leukemia	GEO GSE154109
1128	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, KLRB1, NKGT, GZMB, PRF1, FFBP2"	Natural killer (NK) cells	Tissue	Blood	32692727	JCI Insight	Risk-associated alterations in marrow T cells in pediatric leukemia	GEO GSE154109
1129	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, LINC00926"	B cells	Blood	Blood	32707001	Nucleic Acid Ther	Efficiency and Target Derepression of Anti-miR-92aï¼ Results of a First in Human Study	NA
1130	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A9, S100A8, LYZ, VCAN, CD14, CSTA, LINC00937"	CD14 monocytes	Blood	Blood	32707001	Nucleic Acid Ther	Efficiency and Target Derepression of Anti-miR-92aï¼ Results of a First in Human Study	NA
1131	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, RCAN3, TCF7, NOSIP, LEF1, CCR7"	CD4 T cells	Blood	Blood	32707001	Nucleic Acid Ther	Efficiency and Target Derepression of Anti-miR-92aï¼ Results of a First in Human Study	NA
1132	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"TRGC2, ZNF683, CD8A, LYAR"	CD8 T cells	Blood	Blood	32707001	Nucleic Acid Ther	Efficiency and Target Derepression of Anti-miR-92aï¼ Results of a First in Human Study	NA
1133	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	32707001	Nucleic Acid Ther	Efficiency and Target Derepression of Anti-miR-92aï¼ Results of a First in Human Study	NA
1134	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"HBA1, KLRF1, FGFBP2, PRF1, SPON2, GZMB"	Natural killer (NK) cells	Blood	Blood	32707001	Nucleic Acid Ther	Efficiency and Target Derepression of Anti-miR-92aï¼ Results of a First in Human Study	NA
1135	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A"	B cells	Blood	Blood	32723919	mBio	"Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipelineï¼_athways to Reservoirs and HIV-Associated Comorbidities"	GSE153958
1136	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Blood	Blood	32723919	mBio	"Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipelineï¼_athways to Reservoirs and HIV-Associated Comorbidities"	GSE153958
1137	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Blood	Blood	32723919	mBio	"Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipelineï¼_athways to Reservoirs and HIV-Associated Comorbidities"	GSE153958
1138	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	32723919	mBio	"Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipelineï¼_athways to Reservoirs and HIV-Associated Comorbidities"	GSE153958
1139	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	32723919	mBio	"Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipelineï¼_athways to Reservoirs and HIV-Associated Comorbidities"	GSE153958
1140	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"PRTN3, ELANE, AZU1, CST7"	Myeloid cells	Tissue	Blood	32747558	Proc Natl Acad Sci U S A	Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome	GSE37642
1141	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, ZCCHC7"	B cells	Tissue	Blood	32747558	Proc Natl Acad Sci U S A	Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome	GSE37642
1142	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"PRTN3, ELANE, AZU1, CST7"	Dendritic cells	Tissue	Blood	32747558	Proc Natl Acad Sci U S A	Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome	GSE37642
1143	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroids	"CA1, CA2, HBM, HBD"	Immature erythroids	Tissue	Blood	32747558	Proc Natl Acad Sci U S A	Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome	GSE37642
1144	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCN1, CCL3, S100A8, S100A9, LYZ, CST3"	Monocytes	Tissue	Blood	32747558	Proc Natl Acad Sci U S A	Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome	GSE37642
1145	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD79A"	B cells	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1146	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, CD14, LYZ, CST3, FCER1G"	CD14 monocytes	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1147	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, LYZ, CST3, FCER1G, FCGR3A"	CD16 monocytes	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1148	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CD3E, CD3D, IRF7, IFI44L, ISG15, IFI6"	CD4 T cells	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1149	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"IL7R, CD3E, CD3D, CD8A, CD8B, GZMB, GZMA, NKG7, MS4A1, CD79A"	CD8 T cells	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1150	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"S100A8, CD14, LYZ, CST3, CD1C, FCER1G"	Dendritic cells	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1151	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"HBB, IL7R, CD3E, CD3D"	Erythrocytes	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1152	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"PPBP, S100A8, CD14, LYZ, CST3, FCER1G"	Megakaryocytes	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1153	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"FCER1G, FCGR3A, GZMA, GZMB, GZMH, NKG7"	Natural killer (NK) cells	Blood	Blood	32747814	Nat Immunol	Mapping systemic lupus erythematosus heterogeneity at the single-cell level	NA
1154	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"PTPRC, CCR7, CD79A, PTPRC, CCR7, CD79A, CD38"	Plasma B cells	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1155	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"PTPRC, CD14"	CD14 monocytes	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1156	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"PTPRC, FCGR3A"	CD16 monocytes	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1157	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"PTPRC, CD3D, IL7R, CCR7, CD8A"	CD4 T cells	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1158	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"PTPRC, CD3D, IL7R, CCR7"	CD8 T cells	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1159	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"PTPRC, CD14, CD1C"	Myeloid dendritic cells (MDCS)	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1160	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"PTPRC, FCGR3A, TRGC1, NKG7"	Natural killer (NK) cells	Blood	Blood	32764665	Nat Commun	Single-cell analysis of two severe COVID-19 patients reveals a monocyte-associated and tocilizumab-responding cytokine storm.	GSE150861
1161	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD11c	Dendritic cells	Blood	Blood	32783915	Cell	Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer	GSE150877
1162	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD11c"	Monocytes	Blood	Blood	32783915	Cell	Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer	GSE150877
1163	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD11b, Gr-1"	Myeloid cells	Blood	Blood	32783915	Cell	Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer	GSE150877
1164	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1165	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD14"	CD16 monocytes	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1166	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, FCGR3A"	CD16 monocytes	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1167	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Monocyte-derived dendritic cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1168	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	KLRF1	Natural killer (NK) cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1169	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, FCGR3A"	Non-classical monocytes	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
1170	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"HLA-DRA, HLA-DRB1, CD83"	HLA-DRhiCD83hi monocytes	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
1171	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, S100A9, S100A12"	HLA-DRloS100Ahi monocytes	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
1172	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"CD24, PGLYRP1, DEFA3, DEFA4"	Immature neutrophils	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
1173	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD38, CD95, CXCR3"	Classical monocytes	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
1174	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"CD81, SPN, FUT4, CD63, CEACAM8"	Pro-neutrophils	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
1175	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"ITGAM, CEACAM8, CD101"	Pre-neutrophils	Blood	Blood	32810438	Cell	Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment	NA
1176	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGLV3-19, IGH4-34, IGHG1, IGHA1, JCHAIN"	B cells	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
1177	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MS4A1"	B cells	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1178	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD33, CD14"	CD14 monocytes	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1179	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD33, FCGR3A"	CD16 monocytes	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1180	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD207	Dendritic cells	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1181	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"ITGA2B, ITGB3, SELP, PF4"	Megakaryocytes	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1182	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NCAM1	Natural killer (NK) cells	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1183	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8, PDCD1, NKG7, LAG3, GZMH, GZMB, GNLY, FGFBP2, HLA-G"	Cytotoxic Memory T Cells	Blood	Blood	32826327	Clin Cancer Res	Changes in peripheral and local tumor immunity after neoadjuvant chemotherapy reshape clinical outcomes in patients with breast cancer	NA
1184	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19"	B cells	Blood	Blood	32841218	JCI Insight	ETV6 germline mutations cause HDAC3/NCOR2 mislocalization and upregulation of interferon response genes	BioProject PRJNA657295
1185	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ, MS4A7"	Monocytes	Blood	Blood	32841218	JCI Insight	ETV6 germline mutations cause HDAC3/NCOR2 mislocalization and upregulation of interferon response genes	BioProject PRJNA657295
1186	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Blood	Blood	32841218	JCI Insight	ETV6 germline mutations cause HDAC3/NCOR2 mislocalization and upregulation of interferon response genes	BioProject PRJNA657295
1187	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	IFNG	Natural killer (NK) cells	Blood	Blood	32841340	Blood Adv	Human NK cells prime inflammatory DC precursors to induce Tc17 differentiation	GSE116487
1188	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CD34, ENTPD1"	Endothelial cells	Cell line	Blood	32846125	Cell Rep	Single-Cell Transcriptome Profiling Reveals beta Cell Maturation in Stem Cell-Derived Islets after Transplantation	"GSE151117, GSE139535, GSE114297"
1189	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"LAG3, TIM3, CD8"	CD8 exhausted T cells	Blood	Blood	32881995	Blood	Tumor intrinsic and extrinsic determinants of response to blinatumomab in adults with B-ALL	NA
1190	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"IL7R, SELL"	CD8 T cells	Blood	Blood	32881995	Blood	Tumor intrinsic and extrinsic determinants of response to blinatumomab in adults with B-ALL	NA
1191	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"LEF1, TCF7"	CD4 stem cells	Blood	Blood	32881995	Blood	Tumor intrinsic and extrinsic determinants of response to blinatumomab in adults with B-ALL	NA
1192	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CDH5	Endothelial cells	Cell line	Blood	32938662	Sci Adv	3D curvature-instructed endothelial flow response and tissue vascularization	NA
1193	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ATF3, SPRY2, IL8, JUN, AKAP12, ANGPTL4, FOSL1, ADAMTS1, ADAMTS9"	Endothelial cells	Cell line	Blood	32938662	Sci Adv	3D curvature-instructed endothelial flow response and tissue vascularization	NA
1194	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD4, CD5, IL2RA, CCR7, MAL, CD3D, CD8A, CD8B, GZMK, GZMH, GZMA, CCL5"	Cytotoxic T cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
1195	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD45RA, CD3D, CD3G, CD3E, CD4"	CD4 T cell	Blood	Blood	30567574	bioRxiv preprint	"Cell ""hashing"" with barcoded antibodies enables multiplexing and doublet detection for single cell genomics"	GSE108313
1196	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD45RA, CD3D, CD3G, CD3E, CD8A"	CD8 T cell	Blood	Blood	30567574	bioRxiv preprint	"Cell ""hashing"" with barcoded antibodies enables multiplexing and doublet detection for single cell genomics"	GSE108313
1197	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3E	T cells	Blood	Blood	30692607	Genes Immun	Prioritizing Crohn disease genes by integrating association signals with gene expression implicates monocyte subsets	GSE57945
1198	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD8A"	T cells	Blood	Blood	30810468	RNA BIOL	Role of alternative polyadenylation dynamics in acute myeloid leukaemia at single-cell resolution	NA
1199	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TCF1, TCF7, NR4A2, CD69"	T2	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
1200	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMA, KLRG1, IL-32"	T3	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
1201	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"NR4A1, NR4A2"	Inhibiting T cell differentiation and effector function	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
1202	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	PRDM1	Exhaustion	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
1203	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"Fos, CCL4"	Activation	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
1204	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	NA	Granulysin and lysozyme	Tissue	Blood	31013254	JCI Insight	Early alterations in stem-like/marrow- resident T cells and innate and myeloid cells in preneoplastic gammopathy	NA
1205	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD62L, CD8A"	CCR7 neg T cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
1206	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CCR7	CCR7 pos T cells	Blood	Blood	31235963	Nat Cell Biol	T cell receptor gene therapy targeting WT1 prevents acute myeloid leukemia relapse post-transplant	GSE128933
1207	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3E	T cells	Blood	Blood	31316748	F1000 Research	"An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"	NA
1208	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CCL5, TRAC, CD3D"	T cells	Blood	Blood	31332193	Nat Commun	Predicting bacterial infection outcomes using single cell RNA-sequencing analysis of Human immune cells	"GSE107991, GSE107992, GSE107994, GSE42832, GSE122084"
1209	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Blood	Blood	31345789	Cancer Discov	Epigenomics and Single-Cell SequencingDefne a Developmental Hierarchy inLangerhans Cell Histiocytosis	NA
1210	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CCR7, IGKC"	B cells	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
1211	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
1212	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GZMH, KLFR1"	Natural killer (NK) cells	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
1213	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"IL7R, GZMH, KLFR1"	Natural killer T (NKT) cells	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
1214	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD2, CD7"	T cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134809
1215	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD2, CD7"	T cells	Blood	Blood	31474370	Cell	Single-Cell Analysis of Crohn s Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy	GSE134809
1216	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD4, CD2, CD3G"	T cells	Blood	Blood	31610612	Br J Haematol	Molecular heterogeneity unravelled by single-celltranscriptomics in patients with essential thrombocythaemia	NA
1217	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD3D, CD3E, CD8A"	T cells	Blood	Blood	31630146	Cytogenet Genome Res	Single-Cell Sequencing Reveals the Relationship between Phenotypes and Genotypes of Klinefelter Syndrome	GSE136353
1218	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, TRAC"	T cells	Blood	Blood	31719197	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	NA
1219	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	Bone marrow and peripheral T cells	Blood	Blood	31792411	Nat Biotechnol	Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia	GSE139369
1220	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3	T cells	Blood	Blood	31827280	Nature	A dominant autoinflammatory disease caused by non-cleavable variants of RIPK1	NA
1221	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, GNLY, GZMA, GZMK"	Cytotoxic T cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1222	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, IL2RA, FOXP3, CTLA4, LAG3, TNFRSF18, IKZF2, IKZF4, LGMN"	Tregs	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1223	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, IFNG, TBX21"	Th1 cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1224	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, GATA-3, CRTH2, IL4, IL13"	Th2 cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1225	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, CD161, CCR4"	Th17 cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1226	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, PDCD1, CXCR5, BCL6"	TFH cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1227	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, CCR7, IL7R, LEF1"	Naive T cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1228	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, CD8, CD4, CD25, CD69"	Activated T cells	Blood	Blood	31857391	Cancer Discov	Single-Cell Transcriptome Analysis Reveals Disease-Defining T-cell Subsets in the Tumor Microenvironment of Classic Hodgkin Lymphoma	NA
1229	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRB1, GATA3"	T cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
1230	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRB1, GATA3"	T cells	Cell line	Blood	31907413	Nat Cell Biol	Multipotent RAG1+ progenitors emerge directly from haemogenic endothelium in Human pluripotent stem cell-derived haematopoietic organoids	GSE124172
1231	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Adipocytes	ADIPOQ	Adipocytes	Cell line	Blood	33020665	Nature Genetics	Highly interconnected enhancer communities control lineage-determining genes in Human mesenchymal stem cells.	GSE113253
1232	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	CTGF	Stem cells	Cell line	Blood	33020665	Nature Genetics	Highly interconnected enhancer communities control lineage-determining genes in Human mesenchymal stem cells.	GSE113253
1233	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TCF7, LEF1, CD3E, CAMK4, LDHB, SARAF, CD3D, NOSIP, CD27, PIK3IP1, IL32, CD5, IL7R, AQP3, LTB, INPP4B, LIME1, ITGB1"	T cells	Blood	Blood	31966074	Oncol Lett	Tracking the important role of JUNB in hepatocellular carcinoma by single-cell sequencing analysis	GSE111360
1234	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3E	T cells	Blood	Blood	31968262	Cell Rep	"Memory B Cell Activation, Broad Anti-influenza Antibodies, and Bystander Activation Revealed by Single-Cell Transcriptomics"	PRJNA512111
1235	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
1236	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Blood	Blood	32023469	Cell Rep	Neonatal Rhesus Macaques Have Distinct Immune Cell Transcriptional Profiles following HIV Envelope Immunization	NA
1237	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL7R, CD3D, CD3E, LCK"	T cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
1238	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL7R, CD3D, CD3E, LCK"	T cells	Blood	Blood	32034137	Nat Commun	Determining sequencing depth in a single-cell RNA-seq experiment	NA
1239	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD4, CD8A"	T cells	Blood	Blood	32042039	Sci Rep	An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples	NA
1240	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD27, IgM, IgD"	Memory B cell	Blood	Blood	33028979	Nat Immunol	Extrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19	EGAS00001002882
1241	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD38, CD27"	ASC B cell	Blood	Blood	33028979	Nat Immunol	Extrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19	EGAS00001002882
1242	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CXCR5, CD62L, CXCR3, CXCR4"	Homing B cell	Blood	Blood	33028979	Nat Immunol	Extrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19	EGAS00001002882
1243	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD24"	Transitional B cell	Blood	Blood	33028979	Nat Immunol	Extrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19	EGAS00001002882
1244	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, HLA-DR, CD40, CD69, CD86, PD-1, CD23"	Activation B cell	Blood	Blood	33028979	Nat Immunol	Extrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19	EGAS00001002882
1245	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, IgD, CD11C"	Naive B cell	Blood	Blood	33028979	Nat Immunol	Extrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19	EGAS00001002882
1246	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD11C, CD21"	Double negative B cell	Blood	Blood	33028979	Nat Immunol	Extrafollicular B cell responses correlate with neutralizing antibodies and morbidity in COVID-19	EGAS00001002882
1247	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD8"	T cells	Blood	Blood	32251450	PLoS Pathog	Integrating GWAS with bulk and single-cell RNA-sequencing reveals a role for LY86 in the anti-Candida host response.	NA
1248	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CXCR3, CD4"	T cells	NA	Blood	32257537	Aging Dis	Transplantation of ACE2 Mesenchymal Stem Cells Improves the Outcome of Patients with COVID-19 Pneumonia.	NA
1249	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CXCR3, CD4"	T cells	NA	Blood	32257537	Aging Dis	Transplantation of ACE2 Mesenchymal Stem Cells Improves the Outcome of Patients with COVID-19 Pneumonia.	NA
1250	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, DUSP2, KLRB1"	Cyotoxic anti-apoptotic	Blood	Blood	32382059	Nat Commun	Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease	E-MTAB-8911
1251	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Blood	Blood	32415257	Sci Rep	Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity.	GSE132509
1252	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD4	Naive CD4+ T cells	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1253	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	NKG7	CDK1 Pre-Th1	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1254	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	IL2	Th1	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1255	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	ISG15	ISG15 Th1	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1256	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL5, IL9"	Th2	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1257	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IFNG, FOXP3, IL17A"	Tregs	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1258	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMB, CD8A"	CD8 GZMB T Cells	Blood	Blood	32415749	Clin Transl Sci	Interindividual Variability in Lymphocyte Stimulation and Transcriptomic Response Predicts Mycophenolic Acid Sensitivity in Healthy Volunteers	GSE141026
1259	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Blood	32470390	Cancer Cell	Extensive Remodeling of the Immune Microenvironment in B Cell Acute Lymphoblastic Leukemia	GSE134759
1260	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, MAL"	CD4+ T-cells	Blood	Blood	32623457	J Infect Dis	Measles Virus Infects and Programs MAIT Cells for Apoptosis	NA
1261	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR7, IL7R, TRAC, CD3D, TRBC2"	T cells	Tissue	Blood	32692727	JCI Insight	Risk-associated alterations in marrow T cells in pediatric leukemia	GEO GSE154109
1262	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Blood	Blood	32723919	mBio	"Interactions of Monocytes, HIV, and ART Identified by an Innovative scRNAseq Pipelineï¼_athways to Reservoirs and HIV-Associated Comorbidities"	GSE153958
1263	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD7, GZMA"	T cells	Tissue	Blood	32747558	Proc Natl Acad Sci U S A	Multidimensional study of the heterogeneity of leukemia cells in t(8;21) acute myelogenous leukemia identifies the subtype with poor outcome	GSE37642
1264	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD8A, CCR7, SELL, CD62L"	T cells	Cell line	Blood	32755564	Molecular Therapy	A Distinct Transcriptional Program in Human CAR T Cells Bearing the 4-1BB Signaling Domain Revealed by scRNA-Seq	NA
1265	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRG1, ITGB1, CCR7, SELL"	Central memory	Blood	Blood	32783915	Cell	Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer	GSE150877
1266	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMK, KLRG1, KLRB1, PRF1"	Effector memory	Blood	Blood	32783915	Cell	Coupled scRNA-Seq and Intracellular Protein Activity Reveal an Immunosuppressive Role of TREM2 in Cancer	GSE150877
1267	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, PRF1"	Activated T cells	Blood	Blood	32788748	Nat Immunol	Single-cell landscape of immunological responses in patients with COVID-19	HRA000150
1268	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"NKG7, CD8A, CST7, GZMB, GZMA"	T cells	Blood	Blood	32810439	Cell	Elevated Calprotectin and Abnormal Myeloid Cell Subsets Discriminate Severe from Mild COVID-19	GSE145926
1269	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD7, CD3D, IL7R, CD8a"	T cells	Blood	Blood	32822091	Mol Carcinog	Analysis of circulating breast cancer cell heterogeneity and interactions with peripheral blood mononuclear cells	GSE139495
1270	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL7R, CCR7, S100A4"	T cells	Blood	Blood	32841218	JCI Insight	ETV6 germline mutations cause HDAC3/NCOR2 mislocalization and upregulation of interferon response genes	BioProject PRJNA657295
1271	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL7R, CCR7"	T cells	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
1272	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD154, CD69, CD38, CD137, CD279, PD-1, HLA-DR"	T cells	Blood	Blood	33096020	Cell	Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration	GSE152522
1273	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3G, CD2, CD27, CD3E, CD3D"	T cells	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1274	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	IL7R	CD4T	Blood	Blood	33226961	Weilong Zhang	Single cell sequencing reveals cell populations that predict primary resistance to imatinib in chronic myeloid leukemia	GSE14671
1275	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8T	Blood	Blood	33226961	Weilong Zhang	Single cell sequencing reveals cell populations that predict primary resistance to imatinib in chronic myeloid leukemia	GSE14671
1276	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD3D"	T cells	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
1277	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"PDCD1, HAVCR2, LAG3, TIGIT"	Cytotoxic T cells	Blood	Blood	33409501	Nat Cancer	Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma.	GSE124310
1278	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, MS4A1"	B cells	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1279	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3, LGALS1"	Dendritic cells	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1280	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"PF4, PPBP"	Megakaryocytes	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1281	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, FCGR3A, S100A12, S100A9, S100A8, MS4A7, HMOX1, FCN1"	Monocytes	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1282	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, GZMB, PRF1, FGFBP2, XCL2, SPON2, FCGR3A, KLRC1, KLRD1"	Natural killer (NK) cells	Blood	Blood	33155517	Circ Res	Clonal Hematopoiesis-Driver DNMT3A Mutations Alter Immune Cells in Heart Failure	NA
1283	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"TCF7, LEF1, SELL, CCR7, NKG7, CCL4, CST7, PRF1, GZMA, GZMB, IFNG, CCL3"	Cytotoxic	Blood	Blood	33171100	Cell	Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19	NA
1284	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"TCF7, LEF1, SELL, CCR7, PDCD1, TIGIT, LAG3, HAVCR2, CTLA4"	Exhaustion	Blood	Blood	33171100	Cell	Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19	NA
1285	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"TCF7, LEF1, SELL, CCR7, MKI67, TYMS"	Proliferation	Blood	Blood	33171100	Cell	Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19	NA
1286	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"FCER2, SLAMF7, ITGAX, FCRL5"	Memory B Cell	Blood	Blood	33171100	Cell	Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19	NA
1287	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD34, PECAM1, KDR, CDH5, CD34"	Endothelial progenitor	Cell line	Blood	33178051	Front Physiol	Flow-Induced Transcriptomic Remodeling of Endothelial cellss Derived From Human Induced Pluripotent Stem Cells	GSE150741 and GSE150740.
1288	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD34, PECAM1, KDR, CDH5, PROX1, PDPN"	Lymphatic EC	Cell line	Blood	33178051	Front Physiol	Flow-Induced Transcriptomic Remodeling of Endothelial cellss Derived From Human Induced Pluripotent Stem Cells	GSE150741 and GSE150740.
1289	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	ACTA2	Smooth muscle cells	Cell line	Blood	33178051	Front Physiol	Flow-Induced Transcriptomic Remodeling of Endothelial cellss Derived From Human Induced Pluripotent Stem Cells	GSE150741 and GSE150740.
1290	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, ID3"	Activated B cells	NA	Blood	33208941	Nature	Defining HPV-specific B cell responses in patients with head and neck cancer	GSE153559
1291	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD38, MZB1, PRDM1, XBP1"	Antibody secreting cells	NA	Blood	33208941	Nature	Defining HPV-specific B cell responses in patients with head and neck cancer	GSE153559
1292	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"TCL1A, AICDA, MME, MS4A1, ID3"	Germinal centre B cells	NA	Blood	33208941	Nature	Defining HPV-specific B cell responses in patients with head and neck cancer	GSE153559
1293	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A9, CD14, CD16, FCGR3A"	CD16+ monocytes	Blood	Blood	33226961	Weilong Zhang	Single cell sequencing reveals cell populations that predict primary resistance to imatinib in chronic myeloid leukemia	GSE14671
1294	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, PF4, CD79A, CD14"	CD14+ monocytes	Blood	Blood	33226961	Weilong Zhang	Single cell sequencing reveals cell populations that predict primary resistance to imatinib in chronic myeloid leukemia	GSE14671
1295	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD19"	B cells	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
1296	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"GATA2, HOXA10, LYZ, FCN1, S100A9, PCLAF, STMN1, MKI67, TOP2A, CDK1"	Monocytes/macrophages	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
1297	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, GZMA"	Natural killer (NK) cells	Blood	Blood	33248817	Arch Med Res	A Shift Towards an Immature Myeloid Profile in Peripheral Blood of Critically Ill COVID-19 Patients	PRJNA635580
1298	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1299	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ"	CD14 monocytes	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1300	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8alpha, CD3E, CD4"	CD8 T cells	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1301	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1302	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, S100A4, CD3E, CD4"	Memory CD4 T cells	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1303	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	NA	Monocytes	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1304	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CCR7, CD3E, CD4"	Naive CD4 T cells	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1305	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Blood	Blood	33270695	PLoS One	Pharmacological inhibition of hematopoietic progenitor kinase 1 positively regulates T-cell function.	The single cell RNA-seq data set of human peripheral blood mononuclear cells (hPBMCs) from a healthy donor was downloaded from the 10x Genomics website
1306	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CD68, MARCO, MSR1, SPP1"	Epithelial cells	Blood	Blood	33294861	Cell Rep Med	Osteopontin Links Myeloid Activation and Disease Progression in Systemic Sclerosis	GSE155687
1307	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"APOC1, APOE, TREM2, CYP27A1, LIPA, MMP9"	Epithelial cells	Blood	Blood	33294861	Cell Rep Med	Osteopontin Links Myeloid Activation and Disease Progression in Systemic Sclerosis	GSE155687
1308	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"KLF2, TCF7, S1PR1, LEF1, IL7R, CD27, SELL"	CD8+CD39_CD69_ TIL	NA	Blood	33303615	Science	Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against Human cancer	NA
1309	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD38, MKI67, TNF, IFNG"	CD8+CD39+CD69+ TIL	NA	Blood	33303615	Science	Stem-like CD8 T cells mediate response of adoptive cell immunotherapy against Human cancer	NA
1310	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Blood cells	"Class II HLA, IFITM2, IL1R2, LST2"	White blood cells	Blood	Blood	29108279	Oncotarget	Size-based detection of sarcoma circulating tumor cells and cell clusters	NA
1311	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	CD14+ monocytes	Blood	Blood	33409501	Nat Cancer	Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma.	GSE124310
1312	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD56, CXCR4"	NK population 1	Blood	Blood	33409501	Nat Cancer	Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma.	GSE124310
1313	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD56, CX3CR1,CCL3"	NK population 2	Blood	Blood	33409501	Nat Cancer	Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma.	GSE124310
1314	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD56, IL7R, CD62L"	NK population 3	Blood	Blood	33409501	Nat Cancer	Single-cell RNA sequencing reveals compromised immune microenvironment in precursor stages of multiple myeloma.	GSE124310
1315	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Canonical ventral ganglionic	NKX2_1	Canonical ventral ganglionic	Organoids	Brain	32049002	Cell Rep	Synthetic Analyses of Single-Cell Transcriptomes from Multiple Brain Organoids and Fetal Brain	"SRP121791, SRP180337, SRP191528, SRP096997, SRP131980, SRP139859, SRP105219, SRP083140, SRP174405, SRP057196, GSE104276, GSE120700"
1316	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cfupn	CTIP2	Cfupn	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1317	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Choroid/astro cells	CXCL14	Choroid/astro cells	Organoids	Brain	31607568	Stem Cell Reports	Human Cortical Organoids Expose a Differential Function of GSK3 on Cortical Neurogenesis	E-MTAB-8337
1318	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	REELIN	Cortical layer 1	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1319	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	TBR1	Cortical neuronal pre-plate	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1320	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Da neurogenesis	"LMX1A, FOXA2, NR4A2, OTX2"	Da neurogenesis	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1321	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TH, DDC, PBX1, PITX3"	Da neuron	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1322	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Deep layer cortical	CTIP2	Deep layer cortical	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1323	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Deep-layer cortical plate	CTIP2	Deep-layer cortical plate	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1324	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dorsal cortex	PAX6	Dorsal cortex	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1325	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dorsal forebrain	"FOXG1, LHX2"	Dorsal forebrain	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1326	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	G2m_s npcs	"PTTG1, CENPF, HMGB2, UBE2C, TOP2A, CDC20, NUSAP1, MKI67, CCNB2, CCNB1, UBE2S, CKS2, SMC4, TUBB4B, PBK, ARL6IP1, TPX2, PLK1, ASPM, CC2, PRC1, NUF2, BIRC5, CDKN3, CENPE, H2AFX, SGOL2, GTSE1, CKAP2, FAM64A, NEK2, CC1, KNSTRN, AURKA, AURKB, MAD2L1, PSRC1, CDC"	G2m_s npcs	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1327	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gaba cells	"GABRA2, GAD65, GAD67, VGAT"	Gaba cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137131
1328	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gliogenic_outer radial glia	"PTN, PMP2, FABP7, BCAN, CLU, NPY, C1orf61, PTPRZ1, GPM6B, CST3, SCRG1, VIM, SLC1A3, HOPX, NTRK2, PEA15, TTYH1, MT3, FOS, CDO1, CREB5, PON2, EDNRB, IQGAP2, FAM107A, SOX2, IFI44L, EGR1, PLPP3, DBI, HES1, EZR, FAM181B, ALDOC, NKAIN3, PTGDS, SOX9, C8orf4, KCN"	Gliogenic_outer radial glia	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1329	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gliomas	RAD51AP1	Gliomas	Cell line	Brain	31532757	Aging (Albany NY)	Single-cell RNA-seq reveals RAD51AP1 as a potent mediator of EGFRvIII in Human glioblastomas	"GSE46028, GSE16011"
1330	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glutamate transport cells	"VGLUT1, VGLUT2, CAMK2A"	Glutamate transport cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137130
1331	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Iast	"THBS1, SOX9"	Iast	Cell line	Brain	32220329	Stem Cell Reports	Neuroinflammation and EIF2 Signaling Persist despite Antiretroviral Treatment in an hiPSC Tri-culture Model of HIV Infection	GSE143686
1332	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Img	"IBA1, PU.1, CD4"	Img	Cell line	Brain	32220329	Stem Cell Reports	Neuroinflammation and EIF2 Signaling Persist despite Antiretroviral Treatment in an hiPSC Tri-culture Model of HIV Infection	GSE143686
1333	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inrn	"MAP2, SYN1"	Inrn	Cell line	Brain	32220329	Stem Cell Reports	Neuroinflammation and EIF2 Signaling Persist despite Antiretroviral Treatment in an hiPSC Tri-culture Model of HIV Infection	GSE143686
1334	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lung vsmcs	"PDGFRB, FOXS1, KCNJ8, CD248, CSPG4, RGS5, EBF1, COL6A3, HOXB4, HOXB2, ACTA2, TAGLN, MYL9"	Lung vsmcs	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1335	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Marginal zone_cortical layer	RELN	Marginal zone_cortical layer	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1336	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"LMO1, RSPO2, KCNN3, PACRG, PPP2R2B, LEF1, SLIT2, CACNA1D, TUBB2B, MAP2, SNAP25, LGE, PID"	Mature motor neuron	Cell line	Brain	32961143	Cell Stem Cell	Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs	GSE154178
1337	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"NT5E, ENG"	Mesenchymal stem cells	NA	Brain	33082953	Clin Transl Immunology	"Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy"	NA
1338	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal-like cells	"COL1A1, COL3A1, COL1A2, LUM, BGN, IGFBP7, DCN, FN1, S100B, POSTN, APOD, MGP, MPZ, COL6A3, ANXA1, OLFML2A, COL5A2, PRRX1, SOX10, SI2, ISLR, LAMA4, NGFR, OGN, CDC42EP5, LPAR6, INSC, ADAM12, LINC01198, COL5A1, EDNRA, DLC1, ECM1, AFAP1L2, RBMS3, SGCD, KANK4"	Mesenchymal-like cells	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1339	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Midbrain_hindbrain	"NEFL, NEFM, GAP43, NT, LHX9, STMN2, MAB21L1, TAGLN3, STMN4, TUBA1A, MLLT11, GNG3, NRN1, PCSK1N, APLP1, TUBB2A, NHLH2, I, UCHL1, PPP1R1A, RTN1, BASP1, SCG2, HMP19, DNER, TUBB2B, ZIC1, NSG1, MAP1B, NHLH1, SCG5, NOVA1, MAPT, STMN1, KCNQ1OT1, MAP6, ELAVL2, PO"	Midbrain_hindbrain	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1340	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mural cells	"PDGFRB, FOXF2, RGS5, CD248, CD19, CSPG4"	Mural cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1341	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myocytes	"MYH3, ACTA1, MYOG, MYOD1, MYO18B"	Myocytes	Cell line	Brain	32961143	Cell Stem Cell	Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs	GSE154178
1342	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"SYT1, RBFOX3, CUX2, SATB2, RORB, TLE4"	Excitatory neuronal	Tissue	Brain	31097668	Science	Single-cell genomics identifies cell type-specific molecular changes in autism	NA
1343	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"MBP, MOBP, PLP1"	NA	Tissue	Brain	32142123	Hum Mol Genet	Single cell transcriptome profiling of the Human alcohol-dependent brain	GSE141552
1344	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	BTG2	Anti-proliferative/pro-neurogenic cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1345	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"ANXA1, PALLD, CRYAB"	Apical radial glia	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1346	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"LIN28A, ASNS, LMNB1, PAX6, SOX2, NES"	Neuroepithelial stem cells	Cell line	Brain	33008480	Stem Cell Research & Therapy	Generation of cortical neurons through large-scale expanding neuroepithelial stem cell from Human pluripotent stem cells.	NA
1347	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neurogenic cells	"NEUROG2, ASCL1, HES1, HES5"	Neurogenesis	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1348	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nmda cells	"GRIN1, GRIN2"	Nmda cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137129
1349	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"PAX6, NESTIN"	Npcs	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137136
1350	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"TOP2A, MKI67, CENPF, UBE2C"	Npcs	NA	Brain	32632204	Mol Psychiatry	Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer disease-like pathology in human cerebral organoids	NA
1351	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nsc	"CRABP1, SFRP2, DLK1, ALDH1A1, MDK, PRSS23, CYP1B1, DAPL1, SIX6, PAX6, RAB31, LMAN1, EF5, XIST, COL2A1, MEST, SPP1, CCND1, CCL2, HMGB2, CRABP2, MAB21L1, GYG1, GJA1, ID3, FRZB, SPARC, RORB, RP11-89K21.1, SPHK1, ANP32B, ISY1, PRDX6, CCKBR, RCN1, RPLP0, LRP2"	Nsc	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1352	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nsc_radial glia	"TPBG, TRH, CTGF, VIM, TTYH1, SPARC, RSPO2, CLU, WLS, NTRK2, ZIC1, HES4, RSPO3, ZFP36L1, NES, MEST, CXCR4, CD99, HES1, RCN1, RSPO1, RFX4, CYR61, CCND1, ZNF503, CRB2, CDO1, RP3-395M20.12, KLHDC8B, LHFP, SOX3, CNN3, WNT7B, FAM181A, PAX3, ZIC4, TPPP3, RPL6, L"	Nsc_radial glia	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1353	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	SOX6	Oligodendrocytes	Tissue	Brain	30046099	Nat Methods	Induction of myelinating oligodendrocytes in Human cortical spheroids	GSE110006.
1354	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Opcs	"PDGFRA, VCAN, CSPG4"	Opcs	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1355	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Opcs	"PDGFRA, VCAN, CSPG4"	Opcs	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1356	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Opcs	"PDGFRA, TNR"	OPC	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1357	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	HOPX	Outer radial glia	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1358	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"FAM107A, HOPX"	Outer radial glia	Organoids	Brain	31607568	Stem Cell Reports	Human Cortical Organoids Expose a Differential Function of GSK3 on Cortical Neurogenesis	E-MTAB-8337
1359	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuronal cells	"SNAP25, STMN2, NEFL, CALY, SERPINF1, EEF1A2, KCNIP2"	Pan-neuronal cells	Cell line	Brain	32961143	Cell Stem Cell	Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs	GSE154178
1360	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuronal cells	TUJ1	Pan-neuronal cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1361	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuronal cells	"TUBB3, MAP2, NCAM1, DCX, RBFOX3, ELAVL1"	Pan-neuronal cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137127
1362	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"SOX2, PAX6"	Pan-radial glia	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1363	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"PDGRFbeta, THY1"	Pericytes	Organoids	Brain	31591580	Nat Methods	Single-cell immune landscape of Human atherosclerotic plaques	GSE134049
1364	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RBFOX1, GFAP, PDGFRB, CD248, RGS5, FOXF2, CD19, CSPG4, HIGD1B, FOXC1, ABCC9, KCNJ8, ANPEP, PTN"	Pericytes	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1365	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Perivascular cells	CD109	Perivascular cells	Tissue	Brain	31901251	Cell Stem Cell	Outer Radial Glia-Like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma	PRJNA579593 and SRP132816 (snRNA-seq).
1366	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pluripotency cells	"POU5F1, NANOG, SOX17"	Pluripotency cells	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1367	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pluripotency cells	TRA-1-81	Pluripotent stem cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1368	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Post-synaptic	"HOMER1, GPHN, NLGN1, NLGN2, DLG3, DLG4"	Post-synaptic	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1369	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Potassium channel cells	"KCNC1, KCNC3"	Potassium channel cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137133
1370	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Synaptic cells	"SYN1, PSD95, SHANK3"	Pre-synaptic cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137132
1371	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Synaptic cells	"SYP, GAP43, SYT4, SLC17A7"	Pre-synaptic cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1372	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"CCNB1, UBE2C"	Proliferating precusors	Cell line	Brain	32557945	Stem Cells	Mapping developmental trajectories and subtype diversity of normal and glaucomatous human retinal ganglion cells by single-cell transcriptome analysis	NA
1373	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroepithelial cells	SOX2	Proliferative neuroepithelial	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1374	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"MKI67, NUSAP1, GAD2, DLX5, FOXG1, LHX2, MAP2"	Proliferative precursors	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1375	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Purkinje cells	"PCP4, NECAB2, LMO7, CALB1"	Purkinje cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1376	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pyramidal neuron	THY1	Pyramidal neuron	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1377	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Retina	"RAX, TULP1, CRABP1, FOXG1, LHX2, MAP2"	Retina	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1378	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ganglion cells	"PCP4, NEFL, NEFM"	Retinal ganglion cells	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1379	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"RP11-148B6.1, POU5F1, TERF1, UGP2, L1TD1, TDGF1, LIN28A, HMGA1, USP44, RARRES2, PMAIP1, MGST1, MT1G, DMKN, YBX3, PFN1, PODXL, PRELID1, LINC00678, RPS2, DPPA4, NR6A1, RPL12, MT-CO2, NME4, EIF4EBP1, RANBP1, TPM2, SNRPN, GAL, FTL, SRM, CKS1B, TPM1, FOXD3-AS1"	Stem cells 1	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1380	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"POU5F1, APOE, LDHA, PMAIP1, L1TD1, KRT18, HMGA1, TERF1, MFGE8, RARRES2, TDGF1, MGST1, FOXD3-AS1, PFN1, EIF5A, APRT, EPCAM, DPPA4, TKT, GSTP1, CYBA, CD24, LINC00678, PGAM1, CLDN6, TUBA1C, RPL22L1, THY1, RAN, C1QBP, CTSC, NPM1, TIMM13, CKS1B, RP11-1144P22.1"	Stem cells 2	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1381	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"RP11-148B6.1, POU5F1, PFN1, RPL12, RPS2, RPL8, RPLP1, FOXD3-AS1, RPL35, RPS12, RPS6, S100A11, PTMA, RPL18A, RPL3, UGP2, DMKN, RPS18, RPL19, RPS27A, RANBP1, APRT, TDGF1, RPL15, RPL11, GSTP1, SLIRP, H2AFZ, RPS9, FTL, DPPA4, LINC00678, PRDX1, RPS29, HSPE1, M"	Stem cells 3	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1382	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Subplate	"PCP4, PLS3"	Subplate	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1383	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Superficial cortical plate	SATB2	Superficial cortical plate	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1384	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	"Superficial, late-born cortical layer ii-iv"	SATB2	"Superficial, late-born cortical layer ii-iv"	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1385	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sustentacular cells	SOX2	Sustentacular cells	Tissue	Brain	32066986	Nat Neurosci	Single-cell analysis of olfactory neurogenesis and differentiation in adult Humans	"GSE139522, GSE139522"
1386	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Telencephalic cells	"RELN, SOX5, BRN2, OTX2, LHX2, ROR-BETA"	Telencephalic cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137134
1387	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Telencephalic cells	"FOXG1, LHX2"	Telencephalic cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1388	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CXCR3, KLRB1"	T helper 1 cells	Organoids	Brain	32948672	Sci Immunol	Transcriptomic and clonal characterization of T cells in the Human central nervous system	"phs002222.v1.p1, GSE157277, GSE155488"
1389	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRB1, CCR6"	T helper 17 cells	Organoids	Brain	32948672	Sci Immunol	Transcriptomic and clonal characterization of T cells in the Human central nervous system	"phs002222.v1.p1, GSE157277, GSE155488"
1390	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Thp-1 cells	"CD80, CD11C, CD209"	Thp-1 cells	NA	Brain	32671205	Sci Adv	A micropeptide encoded by lncRNA MIR155HG suppresses autoimmune inflammation via modulating antigen presentation	NA
1391	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Truncated radial glia	CRYAB	Truncated radial glia	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1392	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"CD24, CD9, CCD133"	Neuronal cancer cells	Tissue	Brain	32641768	Nature	Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy	NA
1393	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"CD9, CD44, CD133"	Astro-mesenchymal cancer cells	Tissue	Brain	32641768	Nature	Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy	NA
1394	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"CD9, CD133, PDGFRA, OLIG2"	Progenitor cancer cells	Tissue	Brain	32641768	Nature	Single-cell RNA-seq reveals that glioblastoma recapitulates a normal neurodevelopmental hierarchy	NA
1395	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Undefined (alternative fate)	POU2F3	Undefined (alternative fate)	Tissue	Brain	29915193	Nat Neurosci	Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program	GSE113036
1396	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Unidentified/ low quality cell	TUBB2B	Unidentified/ low quality cell	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1397	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, AQP4, S100B"	Astrocytes	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncoversHuman-specific features of brain development	"GSE75140, GSE86207, GSE75140, GSE86207"
1398	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CLDN5	Endothelial cells	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncoversHuman-specific features of brain development	"GSE75140, GSE86207, GSE75140, GSE86207"
1399	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TBR1, SLC17A7, THY1"	Excitatory neurons	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncoversHuman-specific features of brain development	"GSE75140, GSE86207, GSE75140, GSE86207"
1400	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, GAD2, SLC32A1"	Inhibitory neurons	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncoversHuman-specific features of brain development	"GSE75140, GSE86207, GSE75140, GSE86207"
1401	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"AIF1, ITGAM"	Microglia cells	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncoversHuman-specific features of brain development	"GSE75140, GSE86207, GSE75140, GSE86207"
1402	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"OLIG1, OLIG2, CSPG4, PDGFRA"	Oligodendrocyte precursors	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncoversHuman-specific features of brain development	"GSE75140, GSE86207, GSE75140, GSE86207"
1403	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"S100B, MOG, MBP"	Oligodendrocytes	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncoversHuman-specific features of brain development	"GSE75140, GSE86207, GSE75140, GSE86207"
1404	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"S100B, GFAP"	Astrocytes	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1405	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROD6, CTIP2"	Cortical neurons	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1406	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	GAD1	Interneurons	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1407	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NKX2-1, DLX6"	Interneurons	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1408	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	LHX1	Interneurons	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1409	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"STMN2, GAP43, DCX"	Neurons	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1410	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"S100A10, CD44"	Oligodendrocyte progenitors	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1411	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"HOPX, FAM107A"	Basal radial glia	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1412	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"PDGFRB, FOXS1, KCNJ8, CD248, CSPG4, RGS5, EBF1, CD19, BCL11A, NCAM1, FOXC1, COL9A1, SLC6A12, PAX5, FOXF2"	Brain pericytes	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1413	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	CTIP2	Layer v cortical neurons	Tissue	Brain	29856954	Cell	Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis	dbGAP: phs000989.v3
1414	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"MAPT, GAP43, SYP, CHAT, SLC18A3, ISL1, MNX1, LHX1, LHX3, DCC, ONECUT1, ONECUT2"	Motor neuronal cell	Tissue	Brain	29888333	Neurol Genet	Absence of NEFL in patient-specific neurons in early-onset Charcot-Marie-Tooth neuropathy	NA
1415	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cajal-Retzius cells	"SEMA3E, BTG1, PCDH11X, RELN"	Cajal-Retzius cells	Tissue	Brain	31315641	Genome biology	CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data	"PRJNA484547, PRJNA545246"
1416	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cajal-Retzius cells	RELN	Cajal-Retzius cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1417	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	PLP1	Maturing oligodendrocytes	Tissue	Brain	30046099	Nat Methods	Induction of myelinating oligodendrocytes in Human cortical spheroids	GSE110006.
1418	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	SLC17A7	Neurons	Tissue	Brain	30089906	Nature	RNA velocity of single cells	SRP129388
1419	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	MKI67	Cell cycling cells	Tissue	Brain	29915193	Nat Neurosci	Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program	GSE113036
1420	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"CCNB2, AURKB, PTTG1, TOP2A"	Cell cycling cells	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1421	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Choroid plexus cells	"PTGDS, TTR"	Choroid plexus cells	Tissue	Brain	31315641	Genome biology	CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data	"PRJNA484547, PRJNA545246"
1422	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Choroid plexus cells	"TTR, CXCL14, HTR2C, PCP4, PMCH, PTGDS, DCN, PGM5P4-AS1, IGF1, IGFBP7, PDE6H, TRPM3, KCTD12, CA2, FAM89A, SULF1, PGM5P3-AS1, ECEL1, CLDN5, MSX1, RBM47, TPD52L1, SLC13A4, MITF, AQP1, RSPO2, KCNJ13, PIFO, LINC00305, BAMBI, CCNO, CA4, CYP27A1, TRAC, EYA4, GAL"	Choroid plexus cells	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1423	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, S100B, ALDH1L1, AQP4, AGT, SOX9, VIM, SLC1A3"	Astrocytes	Organoids	Brain	30271673	Nature Biomedical Engineering	Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons.	GSE111831
1424	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SATB2, SLC17A7, SLC17A6, GRIN2A, GRIN1, GRIN2B"	Excitatory neurons	Organoids	Brain	30271673	Nature Biomedical Engineering	Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons.	GSE111831
1425	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, GAD2, SLC32A1, DLX2, DLX5, DLX6"	Inhibitory neurons	Organoids	Brain	30271673	Nature Biomedical Engineering	Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons.	GSE111831
1426	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	EOMES	Cortical intermediate progenitors	Tissue	Brain	31315641	Genome biology	CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data	"PRJNA484547, PRJNA545246"
1427	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Corticotropes	"CUX1, CTGF, TLGF, TLE4, CTIP2, CLIM1, NR2F1, BHLH85, DIAPH3, FOG2, OTX1"	Corticotropes	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137135
1428	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cycling cells	"TOP2A, MKI67"	Cycling cells	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1429	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Differentiated cells	"SOX2, PAX6"	Differentiating prone cells	Cell line	Brain	33008480	Stem Cell Research & Therapy	Generation of cortical neurons through large-scale expanding neuroepithelial stem cell from Human pluripotent stem cells.	NA
1430	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	P-VIMENTIN	Dividing radial glial cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1431	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"EMX1 , PAX6"	Dorsal forebrain progenitors	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1432	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"ENO2, ST18"	Early neural progenitors	Organoids	Brain	31607568	Stem Cell Reports	Human Cortical Organoids Expose a Differential Function of GSK3 on Cortical Neurogenesis	E-MTAB-8337
1433	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"VIM, HES1, NES, NEUROD2, vGLUT1, SLC17A7"	Cortical neuron	Organoids	Brain	32526163	Mol Cell	Dysregulation of BRD4 Function Underlies the Functional Abnormalities of MeCP2 Mutant Neurons	GSE117513
1434	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	MAP2	Early pan-neuronal	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1435	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"SOX6, VCAN, SNTG1, CA10, MEGF11, HIF3A, PCDH15, LHFPL3, MEGF11, NXPH1, PTPRZ1, ITPR2, PDGFRA"	OPCs	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1436	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"DYSF, PLEKHG3, RYR2, CHRM5, LINC01608, PLP1, CNP, ST18, MAG, MOBP"	COPs	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1437	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"ARHGAP24, MEF2C, C10orf11, APOE, CD74, DOCK8, PLXDC2, ELL2, APBB1IP, HLA.DRA, C3, PTPRC"	ImOLG	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1438	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MYO1D, FAM13C, PDE1A, RBFOX1, RASGRF1, PLEKHG1, FBXO32, AFF3"	Oligo1	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1439	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"HSPA1A, CDH19"	Oligo2	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1440	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	TPPP	Oligo3	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1441	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	LINC01608	Oligo4	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1442	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"TNFRSF21, GJB1, TUBB2B, KLK6"	Oligo5	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1443	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"OPALIN, LINC00844, COL4A5, EFHD1, LIPA, LPAR1, CNDP1"	Oligo6	Tissue	Brain	30747918	Nature	Altered human oligodendrocyte heterogeneity in multiple sclerosis	GSE118257
1444	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"ALDOC, CLU, SPARCL1"	Astrocytes	Tissue	Brain	30796088	Mol Syst Biol	De novo gene signature identification from single-cell RNA-seq with hierarchical Poisson factorization	GSE116621
1445	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"AQP4, GFAP"	Astrocytes	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1446	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"AQP4, GFAP"	Astrocytes	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1447	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, CLDN5"	Endothelial cells	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1448	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, CLDN5"	Endothelial cells	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1449	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NRGN, SLC17A7, CAMK2A"	Excitatory neurons	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1450	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NRGN, SLC17A7, CAMK2A"	Excitatory neurons	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1451	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, GAD2"	Inhibitory neurons	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1452	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, GAD2"	Inhibitory neurons	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1453	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CSF1R, CD74, C3"	Microglia cells	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1454	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CSF1R, CD74, C3"	Microglia cells	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1455	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SYT1, SNAP25, GRIN1"	Neurons	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1456	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SYT1, SNAP25, GRIN1"	Neurons	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1457	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	VCAN	Oligodendrocyte progenitors	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1458	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	VCAN	Oligodendrocyte progenitors	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1459	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, MOBP, PLP1"	Oligodendrocytes	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1460	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, MOBP, PLP1"	Oligodendrocytes	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1461	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	FOXG1	Forebrain progenitors	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1462	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"KIAA0101, TYMS, HES1, LHX2, H2AFX, EMX2, CDT1, PBK, IFI44L, CDK1, CREB5, ATAD2, RRM2, CENPK, GLI3, DMRTA2, DHFR, CDCA5, SOX3, PC, AMBN, SPC25, FABP7, TTYH1, GPC1, GINS2, SMC4, NUSAP1, PTN, MYBL2, HES4, CA12, TK1, ORC6, HOPX, OLFM3, SLC1A3, TUBA1B, RAD51AP"	G2M/S dorsal progenitors 1	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1463	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"PTTG1, CENPF, HMGB2, UBE2C, TOP2A, CDC20, NUSAP1, MKI67, CCNB2, CCNB1, UBE2S, CKS2, SMC4, TUBB4B, PBK, ARL6IP1, TPX2, PLK1, ASPM, CC2, PRC1, NUF2, BIRC5, CDKN3, CENPE, H2AFX, SGOL2, GTSE1, CKAP2, FAM64A, NEK2, CC1, KNSTRN, AURKA, AURKB, MAD2L1, PSRC1, CDC"	G2M/S dorsal progenitors 1	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1464	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"C, CENPF, TOP2A, HMGB2, NUSAP1, MKI67, SMC4, UBE2C, TUBA1B, HES6, CDK1, HES5, PTTG1, UBE2T, TYMS, HMGN2, TUBB4B, PRC1, PBK, ASPM, H2AFX, CKS2, TPX2, CKAP2, KIAA0101, NUF2, PC, SGOL2, BIRC5, DLX2, CENPE, ASCL1, SMC2, GTSE1, MAD2L1, CC2, ATAD2, RRM2, HMGB1"	G2M/S ventral progenitors and ips	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1465	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"SLC1A2, GFAP, PLP1, PDGFRA, PTPRC, CLDN5"	Astrocytes	Tissue	Brain	31097668	Science	Single-cell genomics identifies cell type-specific molecular changes in autism	NA
1466	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NRGN, THY1"	NRGN-expressing neurons	Tissue	Brain	31097668	Science	Single-cell genomics identifies cell type-specific molecular changes in autism	NA
1467	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"vimentin, SOX2, nestin"	Glial cells	Tissue	Brain	30046099	Nat Methods	Induction of myelinating oligodendrocytes in Human cortical spheroids	GSE110006.
1468	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"MBP, OLIG2, GFAP"	Glial cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137137
1469	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"OLIG1, OLIG2, GFAP, SLC1A4, S100B"	Glial cells	Organoids	Brain	32049002	Cell Rep	Synthetic Analyses of Single-Cell Transcriptomes from Multiple Brain Organoids and Fetal Brain	"SRP121791, SRP180337, SRP191528, SRP096997, SRP131980, SRP139859, SRP105219, SRP083140, SRP174405, SRP057196, GSE104276, GSE120700"
1470	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"CRYAB, OLIG1, APOE, HLA-B, CEBPB"	Glial cells	NA	Brain	32632204	Mol Psychiatry	Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer disease-like pathology in human cerebral organoids	NA
1471	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"HOPX, GFAP, FOXG1, LHX2, MAP2, S100 Beta"	Glial cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1472	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"GFAP, SOX2, NFIB"	Glial intermediate cells	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1473	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"S100B, GFAP"	Astrocytes	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1474	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CTIP2, SATB2"	Pyramidal neurons	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1475	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granular cells	"GAD1, GAD2, SLC17A7, PCP4, GJA1, MBP, MOBP, RELN, A2M, NEUROD1, TIAM1"	Granular cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1476	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"CD59, CD44, CD38"	Hematopoietic progenitors	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
1477	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"LDB2, DIAPH3"	Cortico-spinal motor neurons	Tissue	Brain	31315641	Genome biology	CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data	"PRJNA484547, PRJNA545246"
1478	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	NHLH1	Immature neurons	Tissue	Brain	31315641	Genome biology	CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data	"PRJNA484547, PRJNA545246"
1479	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	AQP4	Astrocytes	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1480	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CLDN5	Endothelial cells	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1481	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	SLC17A7	Excitatory neurons	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1482	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	GAD2	Inhibitory neurons	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1483	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"P2RY12, CD68, CD74, FTL, MSR1"	Microglia cells	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1484	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	PDGFRA	Oligodendrocyte progenitors	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1485	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	PLP1	Oligodendrocytes	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1486	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	LAMA2	Stromal cells	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1487	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, TF, PLP1, MAG, MOG, CLDN11"	Oligodendrocytes	Tissue	Brain	31327527	Cell	"An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma"	GSE131928
1488	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	TBR2	Intermediate progenitors	Organoids	Brain	28757360	Cell Stem Cell	Fusion of Regionally Specified hPSC-Derived Organoids Models Human Brain Development and Interneuron Migration	GSE97882
1489	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	TBR2	Intermediate progenitors	Tissue	Brain	29856954	Cell	Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis	dbGAP: phs000989.v3
1490	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"SMOC1, S100B"	Intermediate progenitors	Organoids	Brain	31607568	Stem Cell Reports	Human Cortical Organoids Expose a Differential Function of GSK3 on Cortical Neurogenesis	E-MTAB-8337
1491	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"EOMES, PPP1R17"	Intermediate progenitors	Tissue	Brain	32679030	Cell	Origins and Proliferative States of Human Oligodendrocyte Precursor Cells	phs000989.v4.p1
1492	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"EOMES, NHLH1, GAD2, NEUROD2, FOXG1, LHX2, MAP2, TBR2"	Intermediate progenitors	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1493	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"NHLH1, PPP1R17"	Intermediate progenitors	Cell line	Brain	33008480	Stem Cell Research & Therapy	Generation of cortical neurons through large-scale expanding neuroepithelial stem cell from Human pluripotent stem cells.	NA
1494	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"P2RY12, P2RY13, CX3CR1, TMEM119, HLA-DRB1, HLA-DPB1, HLA-DQA1, CD74"	MHC class II cells	Tissue	Brain	31375314	Neuron	Development of a Chimeric Model to Study and Manipulate Human Microglia In Vivo	GSE133434
1495	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"P2RY12, P2RY13, CX3CR1, TMEM119, IFI6, IRF7, ISG15, STAT1, IFIT3"	Microglia cells	Tissue	Brain	31375314	Neuron	Development of a Chimeric Model to Study and Manipulate Human Microglia In Vivo	GSE133435
1496	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"P2RY12, P2RY13, CX3CR1, TMEM119, CCL2, CXCL10, CCL8, CXCL11"	Microglia cells	Tissue	Brain	31375314	Neuron	Development of a Chimeric Model to Study and Manipulate Human Microglia In Vivo	GSE133437
1497	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"EDNRB, SLC1A2, GJA1, F3, ETNPPL"	Astrocytes	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1498	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"SDPR, FN1, NET1, ABCG2, TM4SF1"	Endothelial cells	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1499	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"LCP1, LHFPL2, C3AR1, CX3CR1, CD74, CLEC7A"	Microglia cells	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1500	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1501	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1502	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1503	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1504	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1505	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1506	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1507	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1508	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CNR1, DLX6-AS1, SCN2A, SYT1, SNAP25, RTN1, RELN, STMN2, VSNL1, GAD1, GABRB2, UCHL1, SCG2, GABRA1"	Neurons	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1509	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"ERMN, MBP, CNDP1, SCD, MOBP, UGT8, ENPP2, TF, PLP1"	Oligodendrocytes	Tissue	Brain	31399126	Alzheimers Res Ther	A single-nuclei RNA sequencing study of Mendelian and sporadic AD in the Human brain	NA
1510	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	PTPRC	Leukocytes	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1511	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, AQP4, ALDOC"	Astrocytes	Tissue	Brain	31554641	Cancer Discov	The phenotypes of proliferating glioblastoma cells reside on a single axis of variation	"EGAS00001002185, EGAS00001001900, EGAS00001003845"
1512	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"APOLD1, CLDN5"	Endothelial cells	Tissue	Brain	31554641	Cancer Discov	The phenotypes of proliferating glioblastoma cells reside on a single axis of variation	"EGAS00001002185, EGAS00001001900, EGAS00001003845"
1513	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"CD44, CHI3L1, HIF1A"	Mesenchymal cells	Tissue	Brain	31554641	Cancer Discov	The phenotypes of proliferating glioblastoma cells reside on a single axis of variation	"EGAS00001002185, EGAS00001001900, EGAS00001003845"
1514	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"HLA-DRA, C1QA"	Myeloid cells	Tissue	Brain	31554641	Cancer Discov	The phenotypes of proliferating glioblastoma cells reside on a single axis of variation	"EGAS00001002185, EGAS00001001900, EGAS00001003845"
1515	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"PLP1, MAG, OLIG2, SOX10"	Oligodendrocytes	Tissue	Brain	31554641	Cancer Discov	The phenotypes of proliferating glioblastoma cells reside on a single axis of variation	"EGAS00001002185, EGAS00001001900, EGAS00001003845"
1516	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"ASCL1, OLIG2"	Proneural cells	Tissue	Brain	31554641	Cancer Discov	The phenotypes of proliferating glioblastoma cells reside on a single axis of variation	"EGAS00001002185, EGAS00001001900, EGAS00001003845"
1517	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"PDGFRB, FOXS1, KCNJ8, CD248, CSPG4, RGS5, EBF1, FOXF2, FOXF1, BMPER, COL6A3, HOXB4, HOXB2, ACTA2, TAGLN, MYL9"	Lung pericytes	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1518	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD11b	Macrophages	Tissue	Brain	29262845	Genome Biol	Single-cell profiling of Human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment	"GSE68482, GSE36952, GSE58310, GSE80338, GSE89567, GSE70630"
1519	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"MRC1, CD163"	Brain resident macrophages	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1520	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"MRC1, CD163"	Cancer associated macrophages	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1521	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DCX, STMN2"	Mature neurons	Organoids	Brain	31607568	Stem Cell Reports	Human Cortical Organoids Expose a Differential Function of GSK3 on Cortical Neurogenesis	E-MTAB-8337
1522	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROD6, NEUROD2, NFIB, BHLHE22, SSTR2, GPM6A, SLA, IGFBP5, STMN2, GAP43, BCL11A, CSRP2, GRIA2, PPP2R2B, SOX11, NELL2, CNTP2, NFIA, PDE1A, SP25, THSD7A, BCHE, CPE, SOX5, ENC1, MAP1B, SYT1, RTN1, NRN1, THRA, RAB3A, CAMKV, OLFM1, FOXG1, AUTS2, SNCA, JUN, ZB"	Cortical neurons 1	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1523	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"LMO3, IGFBP5, NEUROD2, THSD7A, NFIB, GPR22, NEUROD6, SP25, GPM6A, CNTP2, PDE1A, SOX5, RTN1, GRIA2, NECAB1, ID2, HMP19, SNCA, FEZF2, CAMKV, RUNX1T1, NELL2, MAP1B, KHDRBS3, TBR1, FXYD6, FAM49A, MAPT, CELF4, SYT1, LY6H, NEGR1, CPE, CSRP2, GAP43, MEF2C, VSTM2"	Cortical neurons 1	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1524	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TAC3, NHLH1, HES6, NFIA, EOMES, NEUROG2, SSTR2, EMX1, SLCO5A1, PHLDA1, SOX11, GADD45G, TCF4, ELAVL2, ELAVL4, TMSB4X, LHX2, NEUROD6, NFIB, ENC1, KLHL35, TAGLN3, PPP1R17, NEUROG1, NEUROD1, MFNG, HPCAL1, MARCKS, ACTG1, RPS11, RCOR2, PRDX1, RGS16, DMRTA2, MFA"	IPS and early cortical neurons	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1525	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"MEIS2, ZFHX3, SIX3, HMP19, SOX4, RTN1, DCX, STMN4, MPPED2, AC004158.3, MAPT, DLX6-AS1, STMN2, ZFHX4, PBX3, RUNX1T1, MALAT1, TUBB2A, PCSK1N, ZNF503, CELF4, VAMP2, SYT1, AKAP9, ETFB, ARPP21, RBFOX1, GRIA2, DAAM1, DLX5, BLCAP, RBFOX2, APLP1, SP9, SLC32A1, AT"	Ventral progenitors and neurons 1	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1526	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PGK1, DLX5, DLX6-AS1, BTG1, GAD1, SOX4, ALDOA, MALAT1, DLX2, H3F3B, DCX, EIF1, CCNI, IGFBP2, SP9, BNIP3L, TTC3, SLC32A1, BNIP3, DLX1, ENO1, WSB1, ANKRD12, STMN2, GAD2, SEC61G, RTN1, MIF, RPL38, CXCR4, TOMM7, CCDC88A, C1orf61, FAU, VAMP2, TMSB10, DLX6, TER"	Ventral progenitors and neurons 2	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1527	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DLX6-AS1, DLX5, PLS3, DLX2, CXCR4, DCX, SCGN, CALB2, ERBB4, TCF4, SOX4, SP9, BTG1, CCDC88A, DLX1, PDE4DIP, SHTN1, GAD1, GAD2, SYNPR, STMN2, RTN1, TMEM123, MTSS1, MLLT11, TMEM161B-AS1, PDZRN3, SLC32A1, SYT1, RND3, ARX, ZEB2, PRKX, SOX11, SP8, CAMK2N1, FAM6"	Ventral progenitors and neurons 3	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1528	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DLX2, DLX5, GAD2, DLX6-AS1, DLX1, PFN2, SP9, ASCL1, RASD1, GSX2, ACTG1, SMOC1, DLX6, DLL1, ARX, RND3, CKB, HES6, HES5, TMSB4X, RGS16, CDK6, BTG1, ACTB, SOX4, CCND2, C1orf61, DLL3, DDX5, DCX, DYNC1I2, RBP1, HNRNPA1, ZEB2, ELAVL4, MPPED2, PCBP4, TOX3, RPS11"	Ventral progenitors and neurons 4	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1529	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, AIF1, FCER1G, FCGR3A, TYROBP, CSF1R"	Macrophages	Tissue	Brain	31327527	Cell	"An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma"	GSE131928
1530	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD52, CD48"	B cells	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1531	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CX3CR1, P2RY12"	Microglia cells	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1532	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, PLP1"	Oligodendrocytes	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1533	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, PLP1"	Oligodendrocytes	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1534	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	Sox2	Neural progenitor cell	Tissue	Brain	31739796	Journal of Neuroinflammation	Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of Human neurons	NA
1535	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	DCX	Immature committed neurons	Tissue	Brain	31739796	Journal of Neuroinflammation	Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of Human neurons	NA
1536	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	beta-tubulin	Mature neurons	Tissue	Brain	31739796	Journal of Neuroinflammation	Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of Human neurons	NA
1537	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	Sox2	Neural progenitor cell	Tissue	Brain	31739796	Journal of Neuroinflammation	Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of Human neurons	NA
1538	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	DCX	Immature committed neurons	Tissue	Brain	31739796	Journal of Neuroinflammation	Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of Human neurons	NA
1539	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	beta-tubulin	Mature neurons	Tissue	Brain	31739796	Journal of Neuroinflammation	Neuronal maturation reduces the type I IFN response to orthobunyavirus infection and leads to increased apoptosis of Human neurons	NA
1540	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ampa cells	"GLUR1, GLUR2, GLUR3, GLUR4"	Ampa cells	Tissue	Brain	31784728	Nature Genetics	Neuronal impact of patient-specific aberrant NRXN1alpha splicing	GSE137128
1541	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	S100A4	Memory T cells	Organoids	Brain	32948672	Sci Immunol	Transcriptomic and clonal characterization of T cells in the Human central nervous system	"phs002222.v1.p1, GSE157277, GSE155488"
1542	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD73, CD3"	CD3+ T cell	Tissue	Brain	31873309	Nat Med	Immune profiling of Human tumors identifies CD73 as a combinatorial target in glioblastoma	PRJNA588461
1543	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD73, CD68"	CD3- CD68+ myeloid cell	Tissue	Brain	31873309	Nat Med	Immune profiling of Human tumors identifies CD73 as a combinatorial target in glioblastoma	PRJNA588461
1544	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD73, CCR5, CCR2, ITGAV, ITGB5, CSF1R"	CD73hi macrophages	Tissue	Brain	31873309	Nat Med	Immune profiling of Human tumors identifies CD73 as a combinatorial target in glioblastoma	PRJNA588461
1545	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"DKK3, SOX9"	Muller glia cells	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1546	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	LTMR	Induced sensory neurons	Cell line	Brain	31968264	Cell Rep	Transcriptional Programming of Human Mechanosensory Neuron Subtypes from Pluripotent Stem Cells	GSE139409
1547	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	LTMR	Induced sensory neurons	Cell line	Brain	31968264	Cell Rep	Transcriptional Programming of Human Mechanosensory Neuron Subtypes from Pluripotent Stem Cells	GSE139409
1548	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	LTMR	Induced sensory neurons	Cell line	Brain	31968264	Cell Rep	Transcriptional Programming of Human Mechanosensory Neuron Subtypes from Pluripotent Stem Cells	GSE139409
1549	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	LTMR	Induced sensory neurons	Cell line	Brain	31968264	Cell Rep	Transcriptional Programming of Human Mechanosensory Neuron Subtypes from Pluripotent Stem Cells	GSE139409
1550	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	TBR1	Cortical neurons	Organoids	Brain	32049002	Cell Rep	Synthetic Analyses of Single-Cell Transcriptomes from Multiple Brain Organoids and Fetal Brain	"SRP121791, SRP180337, SRP191528, SRP096997, SRP131980, SRP139859, SRP105219, SRP083140, SRP174405, SRP057196, GSE104276, GSE120700"
1551	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"STMN2, GAP43, DCX"	General neurons	Organoids	Brain	32049002	Cell Rep	Synthetic Analyses of Single-Cell Transcriptomes from Multiple Brain Organoids and Fetal Brain	"SRP121791, SRP180337, SRP191528, SRP096997, SRP131980, SRP139859, SRP105219, SRP083140, SRP174405, SRP057196, GSE104276, GSE120700"
1552	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, HES1, GLUL"	Astrocytes	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1553	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NRL, RCVRN, CRX, GBN3, GNGT1, TULIP1, MAP2, DCX"	Neurons	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1554	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, CD247, CD7"	Natural killer (NK) cells	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
1555	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	SOX2	Basal cells	Tissue	Brain	32066986	Nat Neurosci	Single-cell analysis of olfactory neurogenesis and differentiation in adult Humans	"GSE139522, GSE139522"
1556	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT5	Horizontal basal cells	Tissue	Brain	32066986	Nat Neurosci	Single-cell analysis of olfactory neurogenesis and differentiation in adult Humans	"GSE139522, GSE139522"
1557	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUJ1, GAP43"	Immature neurons	Tissue	Brain	32066986	Nat Neurosci	Single-cell analysis of olfactory neurogenesis and differentiation in adult Humans	"GSE139522, GSE139522"
1558	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	TUJ1	Immature olfactory sensory neurons	Tissue	Brain	32066986	Nat Neurosci	Single-cell analysis of olfactory neurogenesis and differentiation in adult Humans	"GSE139522, GSE139522"
1559	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KI67	Proliferative globose basal cells	Tissue	Brain	32066986	Nat Neurosci	Single-cell analysis of olfactory neurogenesis and differentiation in adult Humans	"GSE139522, GSE139522"
1560	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"SLC1A2, GLUL, CLU, PON2, MT2A, NEAT1, APOE, SLC1A3, COL5A3, ATP1B2, PTGDS, CST3, NTM, CPE, C1orf61, ATP1A2, ADGRV1, AQP4, MT3, MT1E, EMX2, GJA1, CKB, FAM171B, NDRG2, MT1G, NTRK2, GFAP, TTYH1, FGFR3, MT1F, SFXN5, SPARCL1, DDX17, HIF3A, MT1M, TUBB2B, DST"	Astrocytes	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1561	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"MT2A, MT1F, MT1E, MT1X, MT1G, MT1M, FTL, MT3, FAM171B, TPD52L1, EGLN3, CPE, GJB6, EPHX1, TKT, CLU, RGCC, NUPR1"	Cluster_1	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1562	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"HSP90AA1, HSPB1, CRYAB, MTATP6P1, HSPA1A, UBC, CALM1, HSP90AB1, ATP1B1, GPM6B, CCK, VAMP2, MAP1A, NRGN, EEF1A1, EIF1, TMSB4X"	Cluster_2	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1563	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"COL5A3, FGFR3, C1orf61, NTM, AC007325.2, SLC1A2, CIRBP, ADGRV1, T8L, NCAN, SFXN5, SON, SNRNP70, MIAT, LCNL1, NDRG2, SRRM2, LUC7L3, DST, MFGE8, MTSS1L, MACF1, IQCA1, NPIPB5, PLXNB1, NPIPB3, PDGFRB"	Cluster_3	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1564	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"MICALL2, ATP1B2, CARMIL1, CAPN2, NPIPB12, ATP1A2, ACSL6, SYNE1, ADGRG1, COL16A1, AL391807.1, ACSS1, GABBR1, LINC00982, ADGRB1, ANKDD1A, LSAMP, ACADVL, R5-8S5, R5-8SN5, LGI4, FNBP1, GOLGA8B"	Cluster_4	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1565	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"APOE, PTN, TTYH1, GLUL, CALM2, SLC1A3, WIF1, SLITRK2, TNIK, AC092535.1, MAP1B, SDC4, TUBB2A, CKB, HNRNPL, CXCL14, F3, HES4, TMSB10, PON2, BEX1, ITM2C, SP25, PCSK1N, R5-8SN1, IGFBP7, DDX17, RBM6, GAN, TOB, ACTB"	Cluster_5	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1566	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"ALAT1, GFAP, NEAT1, FP236383.2, SORBS1, PLP1, CEBPD, TSC22D1, PRRG3, SP100, HILPDA, COL6A3, RASD1, CHI3L1, SLC14A1, SAT1, HNRNPH1, PCDH9, PRKCA, BCL6, LINC00969, ANKRD36B, HIF3A, ITGB8, DT, HSPA1B, ETNPPL"	Cluster_6	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1567	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"SLC1A2, GLUL, CLU, PON2, MT2A, NEAT1, APOE, SLC1A3, COL5A3, ATP1B2, PTGDS, CST3, NTM, CPE, C1orf61, ATP1A2, ADGRV1, AQP4, MT3, MT1E, EMX2, GJA1, CKB, FAM171B, NDRG2, MT1G, NTRK2, GFAP, TTYH1, FGFR3, MT1F, SFXN5, SPARCL1, DDX17, HIF3A, MT1M, TUBB2B, DST"	Astrocytes	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1568	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"MT2A, MT1F, MT1E, MT1X, MT1G, MT1M, FTL, MT3, FAM171B, TPD52L1, EGLN3, CPE, GJB6, EPHX1, TKT, CLU, RGCC, NUPR1"	Cluster_1	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1569	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"HSP90AA1, HSPB1, CRYAB, MTATP6P1, HSPA1A, UBC, CALM1, HSP90AB1, ATP1B1, GPM6B, CCK, VAMP2, MAP1A, NRGN, EEF1A1, EIF1, TMSB4X"	Cluster_2	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1570	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"COL5A3, FGFR3, C1orf61, NTM, AC007325.2, SLC1A2, CIRBP, ADGRV1, T8L, NCAN, SFXN5, SON, SNRNP70, MIAT, LCNL1, NDRG2, SRRM2, LUC7L3, DST, MFGE8, MTSS1L, MACF1, IQCA1, NPIPB5, PLXNB1, NPIPB3, PDGFRB"	Cluster_3	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1571	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"MICALL2, ATP1B2, CARMIL1, CAPN2, NPIPB12, ATP1A2, ACSL6, SYNE1, ADGRG1, COL16A1, AL391807.1, ACSS1, GABBR1, LINC00982, ADGRB1, ANKDD1A, LSAMP, ACADVL, R5-8S5, R5-8SN5, LGI4, FNBP1, GOLGA8B"	Cluster_4	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1572	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"APOE, PTN, TTYH1, GLUL, CALM2, SLC1A3, WIF1, SLITRK2, TNIK, AC092535.1, MAP1B, SDC4, TUBB2A, CKB, HNRNPL, CXCL14, F3, HES4, TMSB10, PON2, BEX1, ITM2C, SP25, PCSK1N, R5-8SN1, IGFBP7, DDX17, RBM6, GAN, TOB, ACTB"	Cluster_5	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1573	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"ALAT1, GFAP, NEAT1, FP236383.2, SORBS1, PLP1, CEBPD, TSC22D1, PRRG3, SP100, HILPDA, COL6A3, RASD1, CHI3L1, SLC14A1, SAT1, HNRNPH1, PCDH9, PRKCA, BCL6, LINC00969, ANKRD36B, HIF3A, ITGB8, DT, HSPA1B, ETNPPL"	Cluster_6	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1574	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, BSG, IFITM3, TSC22D1, B2M, IFI27, ID3, IGFBP7, HLA-B, SLC9A3R2, EMP2, ITM2A, DUSP1, TMSB10, IFITM2, BST2, ID1, H3F3B, EGFL7, UBC, C10orf10, HSPA1A"	Endothelial cells	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1575	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, BSG, IFITM3, TSC22D1, B2M, IFI27, ID3, IGFBP7, HLA-B, SLC9A3R2, EMP2, ITM2A, DUSP1, TMSB10, IFITM2, BST2, ID1, H3F3B, EGFL7, UBC, C10orf10, HSPA1A"	Endothelial cells	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1576	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"HLA-B, IBA1, C1QB, CD74, SPP1, SLC25A37, RNASET2, SRGAP2B, C1QC, C1QA, SLCO2B1, SAT1, TMSB4X, CD14, SRGAP2C"	Microglia cells	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1577	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"HLA-B, IBA1, C1QB, CD74, SPP1, SLC25A37, RNASET2, SRGAP2B, C1QC, C1QA, SLCO2B1, SAT1, TMSB4X, CD14, SRGAP2C"	Microglia cells	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1578	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CCK, MAP1B, BEX3, NRGN, MEG3, BCYRN1, SYT1, ATP1B1, MAP1B, SNAP25, UCHL1, RTN1, CHN1, CCK, CALM1, LINC00632, STMN2, NRGN, VAMP2, PPP3CA, VSNL1, BASP1, THY1, MIAT, YWHAH, GNAS, BEX1, AHI1, BEX3, SYP, GPM6A, SNHG14, PCSK1N, MEF2C, MAPK10"	Neurons	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1579	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CCK, MAP1B, BEX3, NRGN, MEG3, BCYRN1, SYT1, ATP1B1, MAP1B, SNAP25, UCHL1, RTN1, CHN1, CCK, CALM1, LINC00632, STMN2, NRGN, VAMP2, PPP3CA, VSNL1, BASP1, THY1, MIAT, YWHAH, GNAS, BEX1, AHI1, BEX3, SYP, GPM6A, SNHG14, PCSK1N, MEF2C, MAPK10"	Neurons	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1580	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"APOD, NOVA1, BCAN, PTPRZ1, OLIG1, LRRC4C, VCAN, TNR, MARCKS, MARCKSL1, SCRG1, HTRA1, SCD5, RAMP1, GPR37L1, PLEKHH2, SMOC1, OLIG2, PLLP, FXYD6, PTN, ITM2C, GRIA2"	Oligodendrocyte precursors	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1581	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"APOD, NOVA1, BCAN, PTPRZ1, OLIG1, LRRC4C, VCAN, TNR, MARCKS, MARCKSL1, SCRG1, HTRA1, SCD5, RAMP1, GPR37L1, PLEKHH2, SMOC1, OLIG2, PLLP, FXYD6, PTN, ITM2C, GRIA2"	Oligodendrocyte precursors	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1582	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, TMEM120, MOBP, PLP1, CRYAB, TTLL7, CLDN11, CNP, MBP, APLP1, SLC44A1, QDPR, TMEM144, GPM6B, SOX2-OT, TF, PCDH9, PIP4K2A, CLDND1, LAMP2, MOBP, AMER2, SCD, DOCK5, MAP7, PTMA, CNTN2, ABCA2, LINC00844, MIR219A2, MAG, HAPLN2, SLC12A2, MID1IP1, EVI2A, CA2"	Oligodendrocytes	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1583	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, TMEM120, MOBP, PLP1, CRYAB, TTLL7, CLDN11, CNP, MBP, APLP1, SLC44A1, QDPR, TMEM144, GPM6B, SOX2-OT, TF, PCDH9, PIP4K2A, CLDND1, LAMP2, MOBP, AMER2, SCD, DOCK5, MAP7, PTMA, CNTN2, ABCA2, LINC00844, MIR219A2, MAG, HAPLN2, SLC12A2, MID1IP1, EVI2A, CA2"	Oligodendrocytes	Tissue	Brain	32070434	Acta Neuropathol Commun	Single-nucleus RNA-seq identifies Huntington disease astrocyte states	NA
1584	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	SMI32	Neural axonal	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1585	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"ZFHX3, CRABP1, GRIA2, FOXG1, MAP2"	Neural crest cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1586	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NES, SOX1"	Neural progenitor cells	Cell line	Brain	32557945	Stem Cells	Mapping developmental trajectories and subtype diversity of normal and glaucomatous human retinal ganglion cells by single-cell transcriptome analysis	NA
1587	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"VIM, GFAP"	Neural progenitor cells	Tissue	Brain	32679030	Cell	Origins and Proliferative States of Human Oligodendrocyte Precursor Cells	phs000989.v4.p1
1588	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PAX6, GMNN, TOP2A, NEUROD2, IGFBPL1, NEUROD1"	Neural progenitors	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1589	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	SOX2	Neural progenitors	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1590	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	SOX2	Neural progenitors	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1591	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"NES, SOX2, SOX9, RFX4"	Neural progenitors_radial glial cells	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1592	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"NES, SOX2, SOX9, RFX4"	Neural progenitors_radial glial cells	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1593	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SOX2, VIM"	Neural stem cells	Organoids	Brain	31978324	Dev Cell	Silencing Trisomy 21 with XIST in Neural Stem Cells Promotes Neuronal Differentiation.	GSE125838
1594	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroblasts	EOMES	Neuroblasts	Tissue	Brain	30089906	Nature	RNA velocity of single cells	SRP129388
1595	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ectoderm cells	"GPC3, KRT8, KRT18, APOE, CRABP2, DLK1, KRT19, S100A11, HESX1, CLDN6, MDK, TPM1, BST2, LIN28A, HAPLN1, LDHA, PERP, FAM60A, HMGA1, ID3, SIX3, NR6A1, TNNT1, MGST1, SLC2A3, ID1, FST, FEZF1, QPRT, TSTD1, PRTG, FRZB, MEST, SHISA2, PMEL, STOM, SEC11A, SERPINH1"	Neuroectodermal-like cells	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1596	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"VCAN, KLF4, COL1A2"	Neuroepithelial cells	Organoids	Brain	30271673	Nature Biomedical Engineering	Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons.	GSE111831
1597	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"VIM, HES1"	Neuroepithelial cells	Organoids	Brain	31591580	Nat Methods	Single-cell immune landscape of Human atherosclerotic plaques	GSE134049
1598	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"VIM, VCAN, KLF4"	Neuroepithelial cells	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1599	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	VIM	Neuroepithelial progenitors	Tissue	Brain	31315641	Genome biology	CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data	"PRJNA484547, PRJNA545246"
1600	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DCX, NCAM1, SYT1, STMN2"	Neuron progenitors	Tissue	Brain	32415072	Nat Commun	Single cell transcriptomics identifies stem cell-derived graft composition in a model of Parkinson's disease	"GSE118412, GSE132758"
1601	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"FOXG1, MAP2"	Neuronal cells	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1602	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"MAPT, DCX"	Neuronal cells	Organoids	Brain	31978324	Dev Cell	Silencing Trisomy 21 with XIST in Neural Stem Cells Promotes Neuronal Differentiation.	GSE125838
1603	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"ANO3, PTPN5, PCP4, ARPP21, TAC1, ACTN1, HPCA, CA12, ARPP19, PENK, SYT1, CHGB, VSNL1, RBFOX3, SYT4, GABRA6, RTN1, PKIB, CBLN1, CPLX2, GAD2, DRD2, LMO7, CALB1, MBP, RELN, TIAM1, SLC17A7, GAD1, SLC32A1, PCDH8, ADORA2A, GPR6, SATB2"	Neuronal cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1604	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"MAP2, SNAP25, TUBB3"	Neuronal cells	Cell line	Brain	32961143	Cell Stem Cell	Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs	GSE154178
1605	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"STMN2, GAP43, DCX, VGAT, GAD1, SLC32A1"	Interneuron	Organoids	Brain	32526163	Mol Cell	Dysregulation of BRD4 Function Underlies the Functional Abnormalities of MeCP2 Mutant Neurons	GSE117513
1606	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	DCX	Neuronal migratory	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1607	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, ALDH1L1, SLC1A2, SLC4A4"	Astrocytes	Tissue	Brain	32142123	Hum Mol Genet	Single cell transcriptome profiling of the Human alcohol-dependent brain	GSE141552
1608	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, B2M"	Endothelial cells	Tissue	Brain	32142123	Hum Mol Genet	Single cell transcriptome profiling of the Human alcohol-dependent brain	GSE141552
1609	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SLC17A7, SATB2, CAMK2A"	Excitatory neurons	Tissue	Brain	32142123	Hum Mol Genet	Single cell transcriptome profiling of the Human alcohol-dependent brain	GSE141552
1610	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, GAD2"	Inhibitory/gabaergic neurons	Tissue	Brain	32142123	Hum Mol Genet	Single cell transcriptome profiling of the Human alcohol-dependent brain	GSE141552
1611	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CSF1R, APBB1IP, P2RY12"	Microglia cells	Tissue	Brain	32142123	Hum Mol Genet	Single cell transcriptome profiling of the Human alcohol-dependent brain	GSE141552
1612	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"VCAN, PDGFRA, PCDH15"	Oligodendrocyte progenitors	Tissue	Brain	32142123	Hum Mol Genet	Single cell transcriptome profiling of the Human alcohol-dependent brain	GSE141552
1613	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"P2RY12, C1QA, CX3CR1"	Microglia cells	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
1614	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"OLIG1, OLIG2"	Oligodendroglial lineage	Tissue	Brain	32253265	Cancer Discov	Tumor Microenvironment Is Critical for the Maintenance of Cellular States Found in Primary Glioblastomas.	PRJNA595375
1615	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	VGF	Oligodendroglial precursors	Tissue	Brain	31901251	Cell Stem Cell	Outer Radial Glia-like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma	PRJNA579593 and SRP132816 (snRNA-seq).
1616	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, APOE"	Astrocytes	Tissue	Brain	32253265	Cancer Discov	Tumor Microenvironment Is Critical for the Maintenance of Cellular States Found in Primary Glioblastomas.	PRJNA595375
1617	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	GFAP	Astroglia astrocytes	Organoids	Brain	32303588	Life Sci Alliance	Robust production of uniform human cerebral organoids from pluripotent stem cells	GSE137877.
1618	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	DLX1	Interneurons	Organoids	Brain	32303588	Life Sci Alliance	Robust production of uniform human cerebral organoids from pluripotent stem cells	GSE137877.
1619	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	S100B	Mature astrocytes	Organoids	Brain	32303588	Life Sci Alliance	Robust production of uniform human cerebral organoids from pluripotent stem cells	GSE137877.
1620	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	DCX	Neurons	Organoids	Brain	32303588	Life Sci Alliance	Robust production of uniform human cerebral organoids from pluripotent stem cells	GSE137877.
1621	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	OLIG1	Oligodendrocyte precursors	Organoids	Brain	32303588	Life Sci Alliance	Robust production of uniform human cerebral organoids from pluripotent stem cells	GSE137877.
1622	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"PDGFRB, CAV1, DCN"	Pericyte group1	Tissue	Brain	29915193	Nat Neurosci	Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program	GSE113036
1623	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"ANGPT1, APOE, LEPR"	Pericyte group2	Tissue	Brain	29915193	Nat Neurosci	Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program	GSE113036
1624	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	AMBP	Pericytes	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1625	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	AMBP	Pericytes	Tissue	Brain	31042697	Nature	Single-cell transcriptomic analysis of Alzheimer's disease	NA
1626	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	PDGFRB	Pericytes	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1627	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"PDGFRB, MCAM, ACTA2, COL4A1, COL4A2, CSPG4, THY1, FN1"	Pericytes	NA	Brain	33082953	Clin Transl Immunology	"Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy"	NA
1628	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"MZB1, SDC1, PRDM1"	Plasma cells	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1629	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"ADGRV1, SLC1A2, SLC1A3, GJA1, MT1F, GFAP, AQP4, EMX2, COL5A3, MT3, APOE, SPARCL1, FGFR3, CST3, AGT, CLU, NDRG2, LGI4, HES1, ATP1A4, PTPRZ1, SOX2, RGCC, SLC17A7, MBP, TIAM1, PCP4, PDGFRA, RELN, HLA-DRA, NEUROD1"	Astrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1630	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NPTX1, ARPP21, CHN1, FBXW7, SYT7, ENC1, SLC17A7, BAIAP2, PHYHIP, OLFM1, SATB2, PCDH8, PCP4, LMO7, MBP, TIAM1, SLC117A7, NECAB2, NEUROD1"	Excitatory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1631	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CXCL14, GAD2, GAD1, SLC6A1, ZNF385D, ARL4C, SST, CALB2, TAC1, NPY, TAC3, ELAVL2, CRABP1, GNAS, CCK, CENPS-CORT, HOMER3, PVALB, VCAN, KCNMA1, SNTG1, GRIA3, DNER, SLC17A7, PCDH8, MBP, RELN, TIAM1, PCP4, SLC32A1, SLC117A7, PENK, NECAB2, LMO7, CALB1, PDGFRA"	Inhibitory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1632	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CD74, C1QB, AIF1, SPP1, C1QC, C3, TYROBP, LAPTM5, CSF1R, HLA-DRA, ITGAX, A2M, TIMP1, SLC17A7, MBP, ITGAM, CX3CR1, PTPRC, TIAM1, PCP4, MOBP, GAD2, TAC1, PENK"	Microglia cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1633	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"VCAN, PDGFRA, SMOC1, PTPRZ1, BCAN, APOD, GPNMB, COL9A1, NEU4, FERMT1, GPR17, DSCAM, SDC3, SLC17A7, CSPG4, MBP, TIAM1, PCP4, MOG, GAD1, MOBP, TAC1"	Oligodendrocyte progenitors	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1634	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"PLP1, MAG, PPP1R14A, TF, MOG, CNP, MBP, CNTN2, TMEM144, CLDND1, CLDN11, DBNDD2, APOD, SPP1, QDPR, SLC17A7, MOBP, TIAM1, PCP4, RELN, GAD2, NEUROD1"	Oligodendrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1635	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TAC1, PCDH8, DRD2, ADORA2A, PENK"	Spindle neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1636	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	A2M	Vascular endothelial cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
1637	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD133, SOX2, NES"	Progenitor-like cells	Tissue	Brain	31901251	Cell Stem Cell	Outer Radial Glia-Like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma	PRJNA579593 and SRP132817 (snRNA-seq).
1638	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CDK1, CDC20, MKI67"	Proliferating progenitors	Organoids	Brain	31607568	Stem Cell Reports	Human Cortical Organoids Expose a Differential Function of GSK3 on Cortical Neurogenesis	E-MTAB-8337
1639	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TOP2A, GLI3, PAX6, SOX2"	Proliferative neural progenitor cells	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1640	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"POU4F2, DLX2, NEUROD2, HOXB4"	Neurons	Cell line	Brain	32557945	Stem Cells	Mapping developmental trajectories and subtype diversity of normal and glaucomatous human retinal ganglion cells by single-cell transcriptome analysis	NA
1641	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	SOX2	Radial glia cells	Tissue	Brain	30089906	Nature	RNA velocity of single cells	SRP129388
1642	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"PAX6, SOX2, HES1, GLI3"	Radial glia cells	Organoids	Brain	30271673	Nature Biomedical Engineering	Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons.	GSE111831
1643	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GJA1, S100B"	Astrocytes	NA	Brain	32632204	Mol Psychiatry	Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer disease-like pathology in human cerebral organoids	NA
1644	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"TMEM119, OLFML3"	Microglia cells	NA	Brain	32632204	Mol Psychiatry	Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer disease-like pathology in human cerebral organoids	NA
1645	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"STMN2, DCX, RELN, NEUROD2, NEUROD6"	Neurons	NA	Brain	32632204	Mol Psychiatry	Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer disease-like pathology in human cerebral organoids	NA
1646	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	SOX2	Radial glia cells	Organoids	Brain	31168097	Nature	Individual brain organoids reproducibly form cell diversity of the Human cerebral cortex.	GSE129519
1647	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	FABP7	Radial glia cells	Tissue	Brain	31901251	Cell Stem Cell	Outer Radial Glia-Like Cancer Stem Cells Contribute to Heterogeneity of Glioblastoma	PRJNA579593 and SRP132816 (snRNA-seq).
1648	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"HOPX, IL6ST, LIFR, BLBP"	Radial glia cells	Tissue	Brain	32004492	Stem Cell Reports	Adult Human Glioblastomas Harbor Radial Glia-like Cells	GSE139448
1649	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"PAX6, SOX2"	Radial glia cells	Organoids	Brain	32051547	Molecular Psychiatry	Glial cell diversity and methamphetamine-induced neuroinflflammation in Human cerebral organoids	NA
1650	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"SLC1A3, SOX2, GLI3, HES1, PAX6, SOX9"	Radial glia cells	NA	Brain	32632204	Mol Psychiatry	Loss of function of the mitochondrial peptidase PITRM1 induces proteotoxic stress and Alzheimer disease-like pathology in human cerebral organoids	NA
1651	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"PAX6, CRYAB, HOPX, SOX2"	Radial glia cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1652	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"VIM, FABP7, FGFBP3, HES1, C1orf61, TTYH1, LHX2, ID4, IFI44L, EMX2, PTN, LINC01551, HEY1, ZFP36L1, DOK5, CREB5, SYNE2, SOX3, SFRP1, PEA15, GPC1, HMGCS1, SOX2, CMBL, P1L1, EFNB2, GLI3, HES4, RPS27L, CKB, SLC1A3, HES5, CCND2, MSMO1, RPS24, SOX9, B3GAT2, EFNB"	Radial glia cells 1	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1653	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"AMBN, RPS3A, RPS15A, RPL7, RPL5, RPL6, EEF1A1, RPS19, RPL18, RPS15, RPL13, RPS14, VIM, RPL36, RPS25, RPL32, RPL35, RPS8, EIF3E, RPL21, RPL35A, RPLP0, RPL34, RPL39, RPL18A, RPS24, SOX3, RPS7, RPL41, CTGF, RPS5, RPL3, TTYH1, RPL9, RPL31, RPL10, RPL13A, RPS1"	Radial glia cells 2	Tissue	Brain	31619793	Nature	Organoid single-cell genomic atlas uncovers human-specific features of brain development	"GSE75140, GSE86207"
1654	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural stem cells	"Pax6, Sox2"	Radial glial neural stem cells	Tissue	Brain	29856954	Cell	Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis	dbGAP: phs000989.v3
1655	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"Neurod2, Neurod6"	Excitatory neurons	Tissue	Brain	32679030	Cell	Origins and Proliferative States of Human Oligodendrocyte Precursor Cells	phs000989.v4.p1
1656	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DLX2, GAD2"	Interneurons	Tissue	Brain	32679030	Cell	Origins and Proliferative States of Human Oligodendrocyte Precursor Cells	phs000989.v4.p1
1657	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"OLIG1, OLIG2, PDGFRA, NKX2-2, SOX10S100B, APOD"	Oligodendrocyte precursors	Tissue	Brain	32679030	Cell	Origins and Proliferative States of Human Oligodendrocyte Precursor Cells	phs000989.v4.p1
1658	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"ALDH1L1, ADGRV1, CLU, SLC1A2, AQP4, GFAP"	Astrocytes	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
1659	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MAL, ERMN, MOBP, PLP1"	Mature oligodendrocytes	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
1660	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"BLNK, C1QA, FCGR2A, CX3CR1, LAPTM5, TMEM119, HLA-DRA, C1QC"	Microglia cells	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
1661	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GRIP1, PPFIA2, KCNIP4, PTK2B, DLGAP1"	Neurons	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
1662	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"PAX6, SFRP2, SIX6, RAX, VSX2"	Retinal progenitor cells	Cell line	Brain	32557945	Stem Cells	Mapping developmental trajectories and subtype diversity of normal and glaucomatous human retinal ganglion cells by single-cell transcriptome analysis	NA
1663	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GZMA, GZMK, GZMM, CST7"	CD4 memory T cells	Organoids	Brain	32948672	Sci Immunol	Transcriptomic and clonal characterization of T cells in the Human central nervous system	"phs002222.v1.p1, GSE157277, GSE155488"
1664	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCL5, NKG7, GZMK, GZMA, GZMM, CCL4, CD69, LGALS1, LGALS3, PDCD1, PRDM1, CXCR6"	Memory CD8 T cells	Organoids	Brain	32948672	Sci Immunol	Transcriptomic and clonal characterization of T cells in the Human central nervous system	"phs002222.v1.p1, GSE157277, GSE155488"
1665	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, AQP4, MLC1, CST3, PAX6, GMNN, TOP2A"	Astrocytes	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1666	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD20, CD79A, B220"	B cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1667	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PDGFRB, FOXS1, KCNJ8, CD248, CSPG4, RGS5, EBF1, BCL11A, NCAM1, FOXC1, PAX5, FOXF2, FOXF1, PECAM1, CLDN5, TIE1, SLC38A5"	Brain endothelial cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1668	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, PECAM1, CD34, ERG, RGS5, PDGFRB, CD248, CLDN5"	Endothelial cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1669	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"NEUROD2, RBFOX1, IGFBPL1, DLX2, HBA1, HBB, HBG1"	Erythrocytes	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1670	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROD2, RBFOX1, IGFBPL1, NUEROD1"	Excitatory neurons	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1671	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DLX2, DLX5, GAD1, LHX6"	Neurons	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1672	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"RGS5, FOXC1, FOXF1, PECAM1, CLDN5, TIE1, SLC6A4"	Lung endothelial cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1673	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD45, CD3, CD7, IL2RG"	Lymphocytes	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1674	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CSF1R, P2RY12, C1QA, FCGR1A, AIF1, PTPRC, CX3CR1, TMEM119"	Microglia cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1675	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"PDGFRA, PMP2, SOX10"	Oligodendrocyte precursors	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1676	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"ACTA2, CNN1, TAGLN, MYH11, PDLIM3, ABCC9"	Vascular smooth muscle cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1677	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"S100A4, FSP1, FBLN1, MFAP5, COL1A1"	Fibroblasts	Cell line	Brain	32961143	Cell Stem Cell	Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs	GSE154178
1678	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"MNX1, SLIT2, SLIT3, LMO1"	Motor neurons	Cell line	Brain	32961143	Cell Stem Cell	Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs	GSE154178
1679	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	SOX2	Stem cells	Cell line	Brain	32961143	Cell Stem Cell	Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs	GSE154178
1680	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GFAP, S100B, AGT, AQP4"	Astrocytes	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1681	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROD4, NEUROD2, GRIA2, FOXG1, LHX2, MAP2"	Excitatory cortical neurons	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1682	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	VGLUT1	Glutamatergic neurons	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1683	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	TUJ1	Immature neurons	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1684	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD2, DLX5, FOXG1, MAP2"	Inhibitory interneurons	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1685	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DLX5, GABA"	Inhibitory neurons	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1686	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	MAP2	Mature neuronal dendritic cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1687	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	NEUN	Mature neurons	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1688	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"DCN, BGN, ACTA2, ZFHX3, CRABP1"	Mesenchymal cells	Organoids	Brain	32976764	Stem Cell Reports	Electrophysiological Maturation of Cerebral Organoids Correlates with Dynamic Morphological and Cellular Development	GSE157019
1689	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3G, CD3D"	T cells	Tissue	Brain	31315641	Genome biology	CellSIUS provides sensitive and specific detection of rare cell populations from complex single-cell RNA-seq data	"PRJNA484547, PRJNA545246"
1690	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"SKAP1, PRF1, ITGA4, TRAC, CXCR4, CCL5"	T cells	Tissue	Brain	31316211	Nature	Neuronal vulnerability and multilineage diversity in multiple sclerosis	PRJNA544731
1691	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD2, CD3D, CD3E, CD3G"	T cells	Tissue	Brain	31327527	Cell	"An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma"	GSE131928
1692	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"AQP4, ADGRV1, GPC5, RYR3"	Astrocytes	Tissue	Brain	32989152	Proc Natl Acad Sci U S A	Single-nucleus transcriptome analysis reveals dysregulation of angiogenic Endothelial cellss and neuroprotective glia in Alzheimer disease	GSE33000
1693	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, ABCB1, EBF1"	Endothelial cells	Tissue	Brain	32989152	Proc Natl Acad Sci U S A	Single-nucleus transcriptome analysis reveals dysregulation of angiogenic Endothelial cellss and neuroprotective glia in Alzheimer disease	GSE33000
1694	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"CAMK2A, CBLN2, LDB2"	Excitatory neurons	Tissue	Brain	32989152	Proc Natl Acad Sci U S A	Single-nucleus transcriptome analysis reveals dysregulation of angiogenic Endothelial cellss and neuroprotective glia in Alzheimer disease	GSE33000
1695	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, LHFPL3, PCDH15"	Inhibitory neurons	Tissue	Brain	32989152	Proc Natl Acad Sci U S A	Single-nucleus transcriptome analysis reveals dysregulation of angiogenic Endothelial cellss and neuroprotective glia in Alzheimer disease	GSE33000
1696	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"C3, LRMDA, DOCK8"	Microglia cells	Tissue	Brain	32989152	Proc Natl Acad Sci U S A	Single-nucleus transcriptome analysis reveals dysregulation of angiogenic Endothelial cellss and neuroprotective glia in Alzheimer disease	GSE33000
1697	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, PLP1, ST18"	Oligodendrocytes	Tissue	Brain	32989152	Proc Natl Acad Sci U S A	Single-nucleus transcriptome analysis reveals dysregulation of angiogenic Endothelial cellss and neuroprotective glia in Alzheimer disease	GSE33000
1698	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, GLDN5, APOLD1, TIE1, CD34, CDH5"	Endothelial cells	NA	Brain	33082953	Clin Transl Immunology	"Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy"	NA
1699	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, AIF1, FCER1G, CD83, CD86, ITGAX, LAPTM5, CSF1R, GPR34, TREM2, SIRPA, RGS10"	Glioma-associated microglia/macrophages	NA	Brain	33082953	Clin Transl Immunology	"Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy"	NA
1700	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD2, CD247, CD96, CD6, LTB, IL7R"	Lymphocytes	NA	Brain	33082953	Clin Transl Immunology	"Endothelial, pericyte and tumor cell expression in glioblastoma identifies fibroblast activation protein (FAP) as an excellent target for immunotherapy"	NA
1701	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"Cd3d, Cd3g, Cd28"	T cells	NA	Brain	32937302	Sci Adv	A micropeptide encoded by lncRNA MIR155HG suppresses autoimmune inflammation via modulating antigen presentation	NA
1702	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	GATA3	T cells	Organoids	Brain	32948672	Sci Immunol	Transcriptomic and clonal characterization of T cells in the Human central nervous system	"phs002222.v1.p1, GSE157277, GSE155488"
1703	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"NEUROD1, PTPRC, CD3D, CD7, IL2RG, CD79A, LSP1, RUNX3, CD69, PECAM1"	T cells	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1704	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"ICOS, CTLA-4, CD25"	T cells	NA	Brain	32989329	Nat Immunol	A micropeptide encoded by lncRNA MIR155HG suppresses autoimmune inflammation via modulating antigen presentation	NA
1705	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"AQP4, SLC1A2"	Astrocytes	Tissue	Brain	33298176	Alzheimers Res Ther	Exploring the role of RALYL in Alzheimer'sdisease reserve by network-based approaches	NA
1706	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"HLA-DRA, CX3CR1, C1QB, CSF1R"	Microglia cells	Tissue	Brain	33298176	Alzheimers Res Ther	Exploring the role of RALYL in Alzheimer'sdisease reserve by network-based approaches	NA
1707	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GRIK2, GRIA1, GRIN2B, RBFOX1"	Neurons	Tissue	Brain	33298176	Alzheimers Res Ther	Exploring the role of RALYL in Alzheimer'sdisease reserve by network-based approaches	NA
1708	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"PCDH15, MEGF11"	Oligodendrocyte progenitors	Tissue	Brain	33298176	Alzheimers Res Ther	Exploring the role of RALYL in Alzheimer'sdisease reserve by network-based approaches	NA
1709	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, MOBP, PLP1"	Oligodendrocytes	Tissue	Brain	33298176	Alzheimers Res Ther	Exploring the role of RALYL in Alzheimer'sdisease reserve by network-based approaches	NA
1710	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD19, PAX3"	Undifferentiated progenitors	Organoids	Brain	32961131	Cell	Single-Cell Analyses Identify Brain Mural Cells Expressing CD19 as Potential Off-Tumor Targets for CAR-T Immunotherapies	GSE153647
1711	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bbdi-resistant cells	"CDK4, CCND1, BCL2L1"	Bbdi-resistant cells	Cell line	Breast	32416067	Molecular Cell	Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer	GSE131102
1712	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hypoxia-induced transcripts	"ANGPTL4, ADM, PLAU"	Hypoxia-induced transcripts	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1713	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"ITGA6, ITGB4"	Mesenchymal stem cells	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1714	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mitochondrial	"MRPL, MDH2, TOMM40"	Mitochondrial	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1715	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"HLA-DR, FCGR3A, CD68, ANPEP, ITGAX, CD14, ITGAM, CD33"	Monocyte-derived cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1716	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nuclear	"RAN, RANBP1, NCL"	Nuclear	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1717	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Perivascular cells	"TAGLN, MYH11, MYLK"	Differentiated-PVL	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1718	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Perivascular cells	"PDGFRB, CD36, RGS5"	Immature-PVL	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1719	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	MKI67	Proliferating T cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1720	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	MKI67	Proliferating tumor cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1721	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CXCL13, CD200"	T follicular helper cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1722	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	HER2	Tumor cells	Tissue	Breast	32732224	Clin Cancer Res	Stimulation of Oncogene-Specific Tumor-Infiltrating T Cells through Combined Vaccine and aPD-1 Enable Sustained Antitumor Responses against Established HER2 Breast Cancer	GSE148482
1723	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Antigen-presenting cells (APC)	"HLA-DRB1, CD74, HLA-DRA"	Antigen-presenting cells (APC)	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1724	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT6A, KRT6B, KRT17, KRT14, KRT5"	Basal cells	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1725	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"VIM, ITGB1, LAMC2"	Mesenchymal cells	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1726	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"HAVCR2, GZMB, VCAM1, PRF1, KLRC1, CCL4, LAG3, CCL3"	CD8 TRM	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1727	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"HMGB2, TUBA1B, TUBB, H2AFZ, CKS1B, STMN1, CC2"	CD8 TRM mitotic	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1728	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"KLRG1, LYAR, GZMK, GZMM, TXNIP, CD8B, FCRL6"	CD8 TEM	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1729	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"TRGC2, ZNF683, XCL1, XCL2, IFITM3, NUCB2, CTSW, NCR3"	CD8 gammadelta	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1730	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"ALOX5AP, PDCD1, IL26, CKLF, IFNG, ANKRD28, DAPK2"	CD4 CD103	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1731	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IGFL2, NR3C1, CD200, CPM, GNG4, CHN1, ITM2A"	CD4 CXCL13	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1732	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"TNFRSF4, IL2RA, FOXP3, TNFRSF18, RTKN2, BATF, PIM2, CTLA4"	CD4 FOXP3	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1733	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CD69, DUSP1, FOS, JUN, CD40LG, PLAC8"	CD4 IL-7R	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1734	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"RGCC, YPEL5, LM, ANXA1, CXCR4, ZFP36, CREM, ZNF331"	CD4 RGCC	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1735	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FTL, FTH1, CSTB, NPC2, CST3, PSAP, SOD2"	CD3 Mono	Tissue	Breast	29942092	Nature medicine	Single-cell profiling of breast cancer T cells reveals a tissue-resident memory subset associated with improved prognosis	GSE110686
1736	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1737	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19"	B cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1738	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GNLY, PFN1, GZMA, GZMB, GMZM, GZMH"	Cytotoxic T cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1739	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, CTLA4, TIGIT, TNFRSF4, LAG3, PDCD1"	Exhausted T cells_t regulatory cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1740	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"ENPP3, KIT"	Mast cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1741	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD45, CD19-, CD3-, CD56-, CD11b"	Myeloid cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1742	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCAM1, NCR1, NKG2"	Natural killer (NK) cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1743	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, PFN1, GZMA, GZMB, GMZM, GZMH"	Natural killer (NK) cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1744	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD45, CD3, CD4, Foxp3"	Regulatory T cells (Treg)	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1745	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, CD3, CD4"	T cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1746	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, CD3, CD4, IL7R"	Naive T-cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1747	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD45, CD3"	T cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1748	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD45, CD4, CD45CD3CD8"	CD8 T cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1749	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD45, CD5, CD45CD3CD4"	CD4 T cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1750	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"MKI67, AURKA, AURKB, PLK1"	Cell cycling cells	Tissue	Breast	29091754	Cell Rep	A Targetable EGFR-Dependent Tumor-Initiating Program in Breast Cancer.	"PRJNA374893, PRJNA39283"
1751	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CDH1, CRB3, DSP"	Epithelial cells	Cell line	Breast	31477929	Nat Genet	A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition	GSE114687
1752	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"CDH2, FN1, VIM"	Mesenchymal cells	Cell line	Breast	31477929	Nat Genet	A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition	GSE114687
1753	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Luminal cells	ESR1	Mature luminal epithelial cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1754	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	Ly6G	Neutrophils	Tissue	Breast	32732224	Clin Cancer Res	Stimulation of Oncogene-Specific Tumor-Infiltrating T Cells through Combined Vaccine and aPD-1 Enable Sustained Antitumor Responses against Established HER2 Breast Cancer	GSE148482
1755	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19, ICOSLG, CR2, CCL22, TVP23A"	Cluster1	Tissue	Breast	32142650	Cell	Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity	GSE135710
1756	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19, DLGAPS, CCNB2, CDCA2, TROAP"	Cluster2	Tissue	Breast	32142650	Cell	Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity	GSE135710
1757	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19, IL10, IGFBP4, KCNG1, PAAT1"	Cluster3	Tissue	Breast	32142650	Cell	Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity	GSE135710
1758	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19, KDM6B, NR1D2, USP36, RGS16"	Cluster4	Tissue	Breast	32142650	Cell	Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity	GSE135710
1759	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19, LTB, FCMR, CD79B, IGHC"	Cluster5	Tissue	Breast	32142650	Cell	Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity	GSE135710
1760	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19, CHST12, SPOCK2, CXCL10, GZMB"	Cluster6	Tissue	Breast	32142650	Cell	Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity	GSE135710
1761	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD45, CD19, INHBA CD14"	Cluster7	Tissue	Breast	32142650	Cell	Complement Signals Determine Opposite Effects of B Cells in Chemotherapy-Induced Immunity	GSE135710
1762	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	JCHAIN	Plasma cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1763	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IL3RA, LILRA4"	Plasmacytoid dentritic cells	Tissue	Breast	29961579	Cell	Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment	NA
1764	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"PABPC1, TAGLN2, HLA-B"	Immune cells	Tissue	Breast	32572199	Nat Biomed Eng	Integrating spatial gene expression and breast tumour morphology via deep learning	NA
1765	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	FOXP3	Regulatory T cells (Treg)	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1766	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, BATF"	Regulatory T cells (Treg)	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1767	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD45, CD11b, Ly6C"	Monocytes	Tissue	Breast	32732224	Clin Cancer Res	Stimulation of Oncogene-Specific Tumor-Infiltrating T Cells through Combined Vaccine and aPD-1 Enable Sustained Antitumor Responses against Established HER2 Breast Cancer	GSE148482
1768	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1769	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT5, KRT14"	Basal cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1770	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1771	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	PECAM1	Endothelial cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1772	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1773	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PDGFRB, THY1, COL1A1, ITGB1, S100A4"	Fibroblasts	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1774	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"MCAM, CD146"	Differentiate perivascular cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1775	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD68	Myeloid cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1776	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myoepithelial cells	"KRT5, KRT14, ACTA2"	Myoepithelial cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1777	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, KLRD1, NCR1, XCL1, NCAM1"	Natural killer (NK) cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1778	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"GNLY, KLRD1, NCR1"	Natural killer T (NKT) cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1779	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"ACTA2, MCAM, CAV1, TAGLN, MYH11, MYLK, RGS5"	Smooth muscle cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1780	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"ALDH1A1, ID2"	Stem cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1781	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"PDGFRB, COL1A1"	Stromal cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1782	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1783	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, IL7R, CD40LG"	CD4 T Cell	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1784	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, GZMH"	CD8 T Cell	Tissue	Breast	32790115	EMBO J	Stromal cell diversity associated with immune evasion in Human triple-negative breast cancer	"GSE21653, GSE58812"
1785	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glycolysis	"GPI, HK1, HK2, PFKP, ENO1"	Glycolysis	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1786	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm morphogenesis	"T, MIXL1"	Mesoderm morphogenesis	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1787	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sarcomeric assembly	"MYH6, CAPN3, NEB, EDN, NKX2-5"	Sarcomeric assembly	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1788	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	"MYL2, HCN4, CASQ2, GPD1L, JAK2, DES, GJA5, PIK3R1, SCN5A, HEY2, FGF12, DMD"	Cardiac contraction	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1789	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"TPM1, FHL2, TNNT2, PLN, TNNC1, TNNI3, CAV1, MYL2, HEY2, HOPX"	Cluster 0	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1790	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"MYH7, ACTN2, ERBB2, VCAM1, TTN, RBM20, RYR2, PKP2, VEGFA, MYBPC3, CAC1C"	Cluster 1	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1791	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"SLC25A51, HAND1, EIF4A1, TAGLN2, TRH"	Cluster 2	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1792	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"FN1, ACTC1, IGFBP3, COL3A1, LUM, CYR61, CTGF"	Cluster 3	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1793	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"CDKN2D, CENPW, POLA2, E2F1, H2AFX, CDK1, CDCA5, TOP2A, AURKB"	Cluster 4	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1794	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"CDKN2C, CENPA, BUB1, CCNB1, KIF20A, CCNB2, CDC20, CDC27"	Cluster 5	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1795	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	"PDGFRA, MEF2C, BMP2, MKL2, PITX2, SNAI2, KDR, MYOCD"	Early cardiac progenitors	Tissue	Cardiomyocytes	30464173	Nat Commun	Defining Human cardiac transcription factor hierarchies using integrated single-cell heterogeneity analysis	NA
1796	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	TRDC	Gamma delta T cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1797	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"APOE, C1Q"	Macrophages	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1798	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8a, CD8B, CCL5"	Activated CD8 T cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1799	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD74, CD79A, IGH"	B cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1800	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD74, CD79A, IGH"	B cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1801	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD74, CD79A, IGH"	B cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1802	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IL7R, CD4"	CD4 T cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1803	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"S100A8, S100A9"	Granulocytes	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1804	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"GNG11, CLU"	Megakaryocytes	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1805	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCGR3A, CD16"	Monocytes	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1806	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1807	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	NA	Myeloid dendritic cells (MDCS)	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1808	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	NA	Myeloid dendritic cells (MDCS)	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1809	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1810	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1811	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8na;CD8B, CCR7"	Nonactivated CD8+ T cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1812	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGHA, IGHM, IGHV, IGKV, IGLV"	Plasma cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1813	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"TCF4, E2-2, TNFRSF21, DR6"	Plasmacytoid dentritic cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1814	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	"PPBP, HEMGN"	Platelet	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1815	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, CTLA4"	Regulatory T cells (Treg)	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1816	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD79A, CD79B, CD19"	B cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1817	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD14"	CD14 monocytes	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1818	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCGR3A, MS4A7"	CD16 monocytes	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1819	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, CD3E, CD3DIL7R, CCR7, TRAC"	CD4 T cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1820	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, CD8B, CD3E, CD3D, IL7R, CCR7, TRAC"	CD8 T cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1821	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CST3"	Dendritic cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1822	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CST3, LILRA4, FCGR3A, MS4A7"	Monocyte-derived dendritic cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1823	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1824	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	LILRA4	Plasmacytoid dendritic cells	Tissue	Cerebrospinal fluid	32859762	Proc Natl Acad Sci U S A	A pathogenic and clonally expanded B cell transcriptome in active multiple sclerosis	GSE133028
1825	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, LCK, TRAC, TRAJ16"	T cells	Tissue	Cerebrospinal fluid	31937773	Nat Commun	Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.	GSE138266
1826	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Choroid	33038331	Dev Cell	Inflammation of the Embryonic Choroid Plexus Barrier following Maternal Immune Activation	NA
1827	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cluster 3	"TSPAN6, PFDN4, TIMM13"	Cluster 3	Tissue	Colon	31441872	Medicine (Baltimore)	Single-cell transcriptional profiling reveals the heterogenicity in colorectal cancer	NA
1828	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	E.secretory	"SCGN, FEV, GNG13, VWA5B2, HTR3E, TRPM5, CRYBA2, HTR3C, AC093642.3, POU2F3, OGDHL, TNNI1, SH2D7, TBX10, SH2D6, B4GALNT4, TFF3, LINC01022, KRT18, FAM177B, TFF1, SSTR2, KREMEN2, KRT8, BMX, TPH1, HMX2, NKX2-2, S100P, RP11-363E7.4, CAMP, FFAR4, GCG, AZGP1, SYTL5, TAS1R3, GFI1B, NCMAP, GPR153, MUC2"	E.secretory	NA	Colon	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
1829	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroid cells	HBB	Erythroid cells	Tissue	Colon	30827679	Cell	Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics	"GSE75790, PRJEB20143, EGAS00001002072, EGAS00001002430, GSE76312"
1830	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gzmk effector cells	TNF	Gzmk effector cells	Tissue	Colon	32747828	Nature medicine	Single-cell atlas of colonic CD8+ T cells in ulcerative colitis	GSE114724
1831	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Il26 cells	IL26	Il26 cells	Tissue	Colon	32747828	Nature medicine	Single-cell atlas of colonic CD8+ T cells in ulcerative colitis	GSE114724
1832	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lti	"JUN, AAK1, ABCB1, ABCC1, ABHD15, ABRACL, ADAM10, ADGRE5, AF213884.2, AFF3, AGPAT5, AHI1, AHR, AKIRIN1, ALDOC, ANKRD10, ANP32A, ANP32E, ANXA1, ANXA7, AP1S1, APMAP, APP, AQP3, AREG, ARF3, ARF4, ARF6, ARHGAP10, ARHGAP31, ARHGAP9, ARHGEF3, ARID4B, ARL2BP, ARL"	Lti	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1833	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lti	"JUN, AAK1, ABCB1, ABCC1, ABHD15, ABRACL, ADAM10, ADGRE5, AF213884.2, AFF3, AGPAT5, AHI1, AHR, AKIRIN1, ALDOC, ANKRD10, ANP32A, ANP32E, ANXA1, ANXA7, AP1S1, APMAP, APP, AQP3, AREG, ARF3, ARF4, ARF6, ARHGAP10, ARHGAP31, ARHGAP9, ARHGEF3, ARID4B, ARL2BP, ARL"	Lti	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1834	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"EPCAM, MKI67, CDK1, S100A14, MUC13, KRT7"	Malignant cells	Tissue	Colon	31744515	Genome Biol	Systematic comparative analysis of single-nucleotide variant detection methods from single-cell RNA sequencing data	NA
1835	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"MAMDC4, NOP56, RP5-821D11.7, SRSF2, KMT5A, BRD2, NUDT8, BAIAP2, ADCK5, SLC4A7, KAZALD1, XPC, NPIPB5, XRRA1, CREB3L4, TUBA4A, HAUS5, C1orf35, CRACR2A, FZR1, PPP1R3E, POLD1, NISCH, FANCA, PHPT1, COLCA2, LUC7L3, PCNT, CHD9, TAF15, NCF1, FLJ37453, SMPD4, FAM1"	Mitotic goblet	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1836	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"MAMDC4, NOP56, RP5-821D11.7, SRSF2, KMT5A, BRD2, NUDT8, BAIAP2, ADCK5, SLC4A7, KAZALD1, XPC, NPIPB5, XRRA1, CREB3L4, TUBA4A, HAUS5, C1orf35, CRACR2A, FZR1, PPP1R3E, POLD1, NISCH, FANCA, PHPT1, COLCA2, LUC7L3, PCNT, CHD9, TAF15, NCF1, FLJ37453, SMPD4, FAM1"	Mitotic goblet	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1837	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mitotic undifferentiated	"ENTHD2, USP43, DCP2, ASPSCR1, NUDT8, ELL2, PHKG2, FASTK, ARL16, GNL3, CLASRP, HERPUD1, RGS16, SLC8B1, ATP13A1, REV3L, NOP2, MAP2K4, DDX56, CYB5D2, SNTB2, HSPG2, PIM2, RP11-357H14.17, SLC25A33, BAP1, ASH1L-AS1, SBNO2, PRAC1, CCDC24, RALGAPA1, MUTYH, ZNF219"	Mitotic undifferentiated	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1838	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mitotic undifferentiated	"ENTHD2, USP43, DCP2, ASPSCR1, NUDT8, ELL2, PHKG2, FASTK, ARL16, GNL3, CLASRP, HERPUD1, RGS16, SLC8B1, ATP13A1, REV3L, NOP2, MAP2K4, DDX56, CYB5D2, SNTB2, HSPG2, PIM2, RP11-357H14.17, SLC25A33, BAP1, ASH1L-AS1, SBNO2, PRAC1, CCDC24, RALGAPA1, MUTYH, ZNF219"	Mitotic undifferentiated	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1839	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"amp3, Ednrb, Cldn5"	Tip-like cell	Tissue	Colon	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
1840	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"Ackr1, Tmem252"	Stalk-like cell	Tissue	Colon	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
1841	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"SPINK4, TFF3"	Comprising goblet-like secretory cells	Cell line	Colon	33176137	Cell Rep	Functional Pro-metastatic Heterogeneity Revealed by Spiked-scRNAseq Is Shaped by Cancer Cell Interactions and Restricted by VSIG1.	"PRJNA609918, PRJNA611719, and PRJNA612027"
1842	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pdc	"PTCRA, LILRA4, GZMB, MZB1, FAM129C, SMPD3, LRRC26, CLIC3, DERL3, EGLN3, CLEC4C, PACSIN1, TSPAN13, MYBL2, MAP1A, PTPRS, TPM2, SHD, LAMP5, IL3RA, ST6GALNAC4, TCF4, C12orf75, LINC00996, SMIM5, SCAMP5, SLC15A4, SLA2, SPIB, TOX2, ZFAT, NEK8, UGCG, KRT5, JCHAIN"	Pdc	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1843	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pdc	"PTCRA, LILRA4, GZMB, MZB1, FAM129C, SMPD3, LRRC26, CLIC3, DERL3, EGLN3, CLEC4C, PACSIN1, TSPAN13, MYBL2, MAP1A, PTPRS, TPM2, SHD, LAMP5, IL3RA, ST6GALNAC4, TCF4, C12orf75, LINC00996, SMIM5, SCAMP5, SLC15A4, SLA2, SPIB, TOX2, ZFAT, NEK8, UGCG, KRT5, JCHAIN"	Pdc	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1844	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	CDK1	Proliferating cells	Tissue	Colon	31270164	Gut	High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity	NA
1845	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"MAF, CXCL13, CXCR5, PDCD1"	T follicular helper cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1846	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL17A, IL17F, IL22, CCR6, KLRB1, RORA"	T helper 17	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1847	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tfh	"TOX2, MAGEH1, PDCD1, CORO1B, GNG4, GK, MAF, TIGIT, IL6ST, SMCO4, CXCR5, CTLA4, POU2AF1, TBC1D4, SLC9A9, IL21, IL6R, CXCL13, FBLN7, CD200, LINC01281, KIAA1324, SLC7A10, PVALB, HEYL, CEBPA, ASCL2, KSR2, C9orf16, CTSB, CD59, PPP1CC, TIAM1, MYL6B, CD4, LINC01"	Tfh	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1848	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tfh	"TOX2, MAGEH1, PDCD1, CORO1B, GNG4, GK, MAF, TIGIT, IL6ST, SMCO4, CXCR5, CTLA4, POU2AF1, TBC1D4, SLC9A9, IL21, IL6R, CXCL13, FBLN7, CD200, LINC01281, KIAA1324, SLC7A10, PVALB, HEYL, CEBPA, ASCL2, KSR2, C9orf16, CTSB, CD59, PPP1CC, TIAM1, MYL6B, CD4, LINC01"	Tfh	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1849	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CCR6	T helper 17 cells	Tissue	Colon	33188258	Sci Rep	Characterisation of CD4+_T-cell subtypes using single cell RNA sequencing and the impact of cell number and sequencing depth.	GSE147928
1850	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCL20, ANXA1, IL7R, IL22, RORA, S100A4, ERN1, TNFAIP3, IL4I1, AQP3, TNFSF13B, CCR6, ADAM19, IL23R, RPLP1, IL17RE, BHLHE40, DPP4, KLF6, GPR183, MYADM, PPP1R15A, SLC4A10, CTSH, TNFRSF25, SLAMF1, NFKBIA, RPLP0, NFKBIZ, MGAT4A, CRIP1, AC020571.3, TTC39C, S100"	T helper 17-like cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1851	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCL20, ANXA1, IL7R, IL22, RORA, S100A4, ERN1, TNFAIP3, IL4I1, AQP3, TNFSF13B, CCR6, ADAM19, IL23R, RPLP1, IL17RE, BHLHE40, DPP4, KLF6, GPR183, MYADM, PPP1R15A, SLC4A10, CTSH, TNFRSF25, SLAMF1, NFKBIA, RPLP0, NFKBIZ, MGAT4A, CRIP1, AC020571.3, TTC39C, S100"	T helper 17-like cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1852	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tuft cells	"MECP2, ARID2, NUMB, EMC10, AK9, FAM118A, USP22, CAMTA2, ARGLU1, FGGY, VGLL4, H1F0, CHD2, GGT7, AKT2, CTDSP2, HMGB1, TMEM45B, MBD4, PLEKHA1, RPS27L, SMARCA4, TMC5, SOS1, PCLO, DDX6, C10orf54, BNIP3L, MBD6, ATF7IP2, C1RL-AS1, TESK2, CLDN12, MICAL2, CD63, RN"	Tuft cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1853	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	EPCAM	Tumor cells	Tissue	Colon	31270164	Gut	High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity	NA
1854	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	PECAM1	Endothelial cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
1855	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	ACTA2	Myofibroblasts	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
1856	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"ASCL2, LGR5, SMOC2, FABP1, AQP8"	Colonic stem cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1857	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"ASCL2, LGR5, SMOC2, FABP1, AQP8"	Colonic stem cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1858	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Colonocytes	"GABARAPL2, EIF4E, COX7B, MSMO1, MAP2K3, B3GNT5, OXSR1, SQRDL, MFSD2A, DYNLT1, RHPN2, IDI1, ARPC3, CYP51A1, ITM2B, UBE2B, RHEB, S100A16, CMPK1, ABCC3, VPS37B, PDXK, ETFA, CD59, FAM177A1, RNF7, CAMTA1, MOB1A, NABP1, TNFSF10, PERP, TSC22D1, USMG5, NUCB1, IFR"	Colonocytes	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1859	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Colonocytes	"GABARAPL2, EIF4E, COX7B, MSMO1, MAP2K3, B3GNT5, OXSR1, SQRDL, MFSD2A, DYNLT1, RHPN2, IDI1, ARPC3, CYP51A1, ITM2B, UBE2B, RHEB, S100A16, CMPK1, ABCC3, VPS37B, PDXK, ETFA, CD59, FAM177A1, RNF7, CAMTA1, MOB1A, NABP1, TNFSF10, PERP, TSC22D1, USMG5, NUCB1, IFR"	Colonocytes	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1860	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Colonocytes	"TMBIM6, B3GNT3, SLC5A3, IFITM2, ADI1, RNASEK, VSIG2, TMPRSS2, GRAMD3, DUSP3, LAMP1, SLC35G1, ACOX1, RHOG, PRDX6, DESI2, CCDC183, ARPC2, UBB, CCL28, ISG20, ZFAND2A, TJP3, IL10RB, TTC22, DDAH2, RHBDF1, STK17B, CRB3, CSTB, H2AFJ, PDE4C, CHMP2A, SPPL2A, XRN1"	Colonocytes-best4	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1861	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Colonocytes	"TMBIM6, B3GNT3, SLC5A3, IFITM2, ADI1, RNASEK, VSIG2, TMPRSS2, GRAMD3, DUSP3, LAMP1, SLC35G1, ACOX1, RHOG, PRDX6, DESI2, CCDC183, ARPC2, UBB, CCL28, ISG20, ZFAND2A, TJP3, IL10RB, TTC22, DDAH2, RHBDF1, STK17B, CRB3, CSTB, H2AFJ, PDE4C, CHMP2A, SPPL2A, XRN1"	Colonocytes-best4	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1862	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD28, TNFRSF14, ICOS, TNFRSF9"	Co-stimulatory T cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1863	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL2, GZMA, GNLY, PRF1, GZMK, IFNG, NKG7"	Cytotoxic T cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1864	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, XCR1, CADM1, CCND1, DBN1, C1orf54, CPNE3, AIM2, CLNK, CYP2E1, CLCN4, GCSAM, RAB7B, IDO1, FKBP1B, TACSTD2, BTLA, ENPP1, RFPL4A, PLCD1, SNX3, HLA-DOB, DNASE1L3, ALOX15, TMEM14A, WDFY4, NCALD, TMSB4X, GPR31, S100B, BATF3, LGALS2, DGAT2, CAMK2D, KIF16"	Dendritric cells (dcs)_xcr1	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1865	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	MPO	Myeloid cells	Tissue	Colon	30827679	Cell	Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics	"GSE75790, PRJEB20143, EGAS00001002072, EGAS00001002430, GSE76312"
1866	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	LGR5	Stem cells	Tissue	Colon	30827679	Cell	Lineage Tracing in Humans Enabled by Mitochondrial Mutations and Single-Cell Genomics	"GSE75790, PRJEB20143, EGAS00001002072, EGAS00001002430, GSE76312"
1867	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	EOMES	Exhausted T cells	Cell line	Colon	31484655	Cancer Immunol Res	Single-Cell Transcriptome Analysis Reveals Gene Signatures Associated with T-cell Persistence Following Adoptive Cell Therapy.	GSE136394
1868	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"LAG3, TIGTI, PDCD1, HAVCR2, CTLA4"	Exhausted T cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1869	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"ZFP36L2, CXCR4, NELL2, LEF1, LYPD3, CD55, EZR, NUCB2, RTKN2, SOX4, FXYD2, YPEL5, CCDC57, DUSP2, LITAF, TCF7, FOS, GPCPD1, FAM177A1, LMNA, PABPC1, LSR, VPS37B, SARAF, GADD45B, PLAC8, FTH1, PTP4A1, SNN, SLC2A3, LEPROTL1, AREG, SC5D, FAM65B, KLF2, ZNF331, RH"	Gamma delta T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1870	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"ZFP36L2, CXCR4, NELL2, LEF1, LYPD3, CD55, EZR, NUCB2, RTKN2, SOX4, FXYD2, YPEL5, CCDC57, DUSP2, LITAF, TCF7, FOS, GPCPD1, FAM177A1, LMNA, PABPC1, LSR, VPS37B, SARAF, GADD45B, PLAC8, FTH1, PTP4A1, SNN, SLC2A3, LEPROTL1, AREG, SC5D, FAM65B, KLF2, ZNF331, RH"	Gamma delta T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1871	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	S100B	Glial cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
1872	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD56, NCAM2, CTSW, HPOX, GNLY, GZMB, GZMA, CCL5, NKG7, IL32"	Activated NK cells	Tissue	Colon	31217164	Cancer Immunol Res	Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair-Deficient Colorectal Cancer.	NA
1873	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Colon	31270164	Gut	High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity	NA
1874	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD4	CD4 T cells	Tissue	Colon	31270164	Gut	High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity	NA
1875	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Tissue	Colon	31270164	Gut	High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity	NA
1876	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD14	Myeloid cells	Tissue	Colon	31270164	Gut	High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity	NA
1877	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	KLRB1	Natural killer (NK) cells	Cell line	Colon	31484655	Cancer Immunol Res	Single-Cell Transcriptome Analysis Reveals Gene Signatures Associated with T-cell Persistence Following Adoptive Cell Therapy.	GSE136394
1878	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"KLRB1, ITGB1, IL7R, S1PR1, C10ORF54"	Tumor-infiltrating lymphocytes (TILs)	Cell line	Colon	31484655	Cancer Immunol Res	Single-Cell Transcriptome Analysis Reveals Gene Signatures Associated with T-cell Persistence Following Adoptive Cell Therapy.	GSE136394
1879	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, SEPP1, APOE, MAF"	Anti-inflammatory macrophage	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1880	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C1QC, C1QB, C1QA, CCL3, CCL3L3, RGL1, ATF3, MAFB, PLA2G4C, PRDM1, MMP9, SOD2, CXCL8, IER3, IL1B, CCL4L2, RP11-61J19.5, HCAR3, SGK1, SEMA6B, STAB1, CCL4, EGR2, SLC31A2, CXCL3, PILRA, CEBPD, CSF1R, FPR3, ATP1B1, TMEM176A, ENPP2, CD72, OTUD1, KLF6, TLR1, NAM"	IL1B_TNFA macrophages	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1881	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD5L, SLC40A1, C1QA, C1QB, MARCO, CETP, APOE, VCAM1"	Large Tumor-associated macrophages	NA	Colon	32785653	JOURNAL OF EXPERIMENTAL MEDICINE	Macrophage morphology correlates with single-cell diversity and prognosis in colorectal liver metast	NA
1882	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C1QA, C1QB, SEPP1, MMP12, VSIG4, FTL, PLA2G2D, TMEM176B, SLC40A1, IGF1, C2, TMEM176A, AIF1, CD68, STAB1, PSAP, FPR3, CD14, GPR34, PLTP, CSF1R, DNPH1, CD81, CST3, ADAMDEC1, APOE, CTSS, P2RY12, NPC2, FUCA1, TMEM119, GPNMB, CD163L1, MS4A6A, DAB2, A2M, CTSC"	Macrophages	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1883	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C1QC, C1QA, C1QB, SEPP1, MMP12, VSIG4, FTL, PLA2G2D, TMEM176B, SLC40A1, IGF1, C2, TMEM176A, AIF1, CD68, STAB1, PSAP, FPR3, CD14, GPR34, PLTP, CSF1R, DNPH1, CD81, CST3, ADAMDEC1, APOE, CTSS, P2RY12, NPC2, FUCA1, TMEM119, GPNMB, CD163L1, MS4A6A, DAB2, A2M"	Macrophages	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1884	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C1QA, C1QB, SEPP1, MMP12, VSIG4, FTL, PLA2G2D, TMEM176B, SLC40A1, IGF1, C2, TMEM176A, AIF1, CD68, STAB1, PSAP, FPR3, CD14, GPR34, PLTP, CSF1R, DNPH1, CD81, CST3, ADAMDEC1, APOE, CTSS, P2RY12, NPC2, FUCA1, TMEM119, GPNMB, CD163L1, MS4A6A, DAB2, A2M, CTSC"	Macrophages	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1885	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C1QC, C1QB, C1QA, CCL3, CCL3L3, RGL1, ATF3, MAFB, PLA2G4C, PRDM1, MMP9, SOD2, CXCL8, IER3, IL1B, CCL4L2, RP11-61J19.5, HCAR3, SGK1, SEMA6B, STAB1, CCL4, EGR2, SLC31A2, CXCL3, PILRA, CEBPD, CSF1R, FPR3, ATP1B1, TMEM176A, ENPP2, CD72, OTUD1, KLF6, TLR1, NAM"	Macrophages	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1886	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C1QC, C1QA, C1QB, SEPP1, MMP12, VSIG4, FTL, PLA2G2D, TMEM176B, SLC40A1, IGF1, C2, TMEM176A, AIF1, CD68, STAB1, PSAP, FPR3, CD14, GPR34, PLTP, CSF1R, DNPH1, CD81, CST3, ADAMDEC1, APOE, CTSS, P2RY12, NPC2, FUCA1, TMEM119, GPNMB, CD163L1, MS4A6A, DAB2, A2M"	Macrophages	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1887	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	FCGR3A	Macrophages	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1888	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	NA	B cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121380
1889	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"AC079767.4, ACP5, ADAM28, AFF3, ALG13, ALOX5, ANKRD13A, ANXA6, AP1B1, APPL1, ARHGAP17, ARHGAP24, ARHGAP25, ARL4A, ARPC3, ARRDC2, ATP6V1G1, BACH1, BACH2, BANK1, BASP1, BCAS4, BCL11A, BCL2A1, BCL7A, BIRC3, BLK, BLNK, BLOC1S2, BTG1, BTK, BTN2A2, C11orf31, C1"	B cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1890	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"FCRL5, CLECL1, FCRL4, RAB31, DUSP4, ITGAX, HCK, RP11-24F11.2, CCR1, GPR34, TNFRSF13B, ANXA4, FGR, GSN, TESC, MYO1F, LRRK2, HMOX1, PREX1, BHLHE41, RUNX2, PLXNC1, LINC00152, RP11-444D3.1, MYL9, ENTPD1, PTPN1, NKG7, LIMK1, XIST, TBC1D9, S100A11, ZEB2, RP11-731F5.2, ARID3A, CAPG, ACP5, GPRIN3, PD"	Brm-FCRL4	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1891	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGLL5, COL9A3, RGS13, HMGN2, MEF2B, DCAF12, ACTG1, ATP5L, UBE2J1, SEC14L1, TCL1A, BACH2, RASSF6, AICDA, NEIL1, PTTG1, STMN1, ISG20, ELL3, CD38, SUSD3, BIK, POU2AF1, GAPDH, CD79B, CD27, SERF2, SH3TC1, TCEA1, DYNLL1, SLC2A5, C4orf3, PPP1CC, LIMD2, TKT, H2AFV, BCL7A, HMGN1, MME, USP53, TPD52, BCAS4"	Plasmablast-AICDA	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1892	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"UBE2C, HMGB2, STMN1, TUBB, PTTG1, TUBA1B, HMGN2, CDC20, CENPF, TOP2A, CCNB2, H2AFZ, NUSAP1, CDK1, HMGB1, CCNB1, TUBB4B, PLK1, CDKN3, H2AFV, HN1, RGS13, MKI67, CKS1B, BIRC5, CDCA3, ASPM, SMC4, TUBA1C, TPX2, GAPDH, ARL6IP1, KP2, LRMP, CDCA8, HMMR, BIK, CC2, CENPA, CKS2, CALM3, AURKB, CENPE, CALM2, HM"	Plasmablast-MKI67	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1893	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"STMN1, HIST1H4C, RRM2, DUT, H2AFZ, TYMS, HMGN2, HMGB2, TUBB, KIAA0101, GAPDH, TK1, MCM7, CDCA7, GINS2, PC, DHFR, HMGB1, DEK, TUBA1B, HMGA1, RGS13, CDT1, H2AFV, RANBP1, DNMT1, UHRF1, FABP5, MCM3, SLBP, CENPM, GCHFR, HMGN1, CARHSP1, ASF1B, H2AFY, GSTP1, MCM5, MEF2B, MYBL2, RMI2, PKMYT1, HNRNPAB, FEN"	Plasmablast-PC	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1894	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MEF2B, SERPI9, LRMP, ACTG1, ELL3, MYO1E, BIK, NEIL1, CAMK1, GAPDH, DEF8, UBE2J1, HMCES, BASP1, SERF2, GCHFR, KLHL6, LCP1, RGS16, CCDC88A, HMGN1, TUBB3, CD40, VNN2, ARPC2, TKT, CD38, ATP5L, LCK, ALOX5AP, RFTN1, POU2AF1, CTSH, METAP2, ACTB, CD27, PAG1, BCAS4, LPP, LIMD2, GRHPR, SEC14L1, DCAF12, SYNE"	Plasmablast-SERPI9	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1895	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"GPR183, TNFRSF13B, CRIP1, VIM, SAMSN1, LDLRAD4, S100A4, CLECL1, UBC, AHK, CAPG, RP5-887A10.1, HLA-C, TOMM7, B2M, RPS14, SSPN, RPS3A, RPL3, RPS18, RPS25, C10orf128, EEF1B2, CD82, MARCKS, JCHAIN, CD44, ADGRE5, TBC1D9, TSC22D3, S100A6, CD27, KLF6, LM, EMP3, TNFSF9, NR4A2, CD24, RSET2, CCDC50, AIM2"	Brm-CD27hi	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1896	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IFITM1, CD69, FCER2, IFITM2, FOS, VPS37B, LY6E, CLEC2B, SLC2A3, IFI44L, SELL, CHI3L2, SARAF, ZNF331, PLAC8, IGHD, C1orf162, ZFP36L2, NR4A2, CD72, CCR7, FTH1, FCMR, CXCR4, CD55, PDE4B, BTG1, FAM129C, FXYD5, RPS4Y1, HLA-A, TMSB10, HLA-E, RPS27, FTL, S1PR1, CD52, MT-ND2, HLA-DRB1, BANK1, RPS29, HLA"	Brm-CD27lo	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1897	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"AC079767.4, ACP5, ADAM28, AFF3, ALG13, ALOX5, ANKRD13A, ANXA6, AP1B1, APPL1, ARHGAP17, ARHGAP24, ARHGAP25, ARL4A, ARPC3, ARRDC2, ATP6V1G1, BACH1, BACH2, BANK1, BASP1, BCAS4, BCL11A, BCL2A1, BCL7A, BIRC3, BLK, BLNK, BLOC1S2, BTG1, BTK, BTN2A2, C11orf31, C1"	B cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1898	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"FCRL5, CLECL1, FCRL4, RAB31, DUSP4, ITGAX, HCK, RP11-24F11.2, CCR1, GPR34, TNFRSF13B, ANXA4, FGR, GSN, TESC, MYO1F, LRRK2, HMOX1, PREX1, BHLHE41, RUNX2, PLXNC1, LINC00152, RP11-444D3.1, MYL9, ENTPD1, PTPN1, NKG7, LIMK1, XIST, TBC1D9, S100A11, ZEB2, RP11-731F5.2, ARID3A, CAPG, ACP5, GPRIN3, PD"	Brm-FCRL4	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1899	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGLL5, COL9A3, RGS13, HMGN2, MEF2B, DCAF12, ACTG1, ATP5L, UBE2J1, SEC14L1, TCL1A, BACH2, RASSF6, AICDA, NEIL1, PTTG1, STMN1, ISG20, ELL3, CD38, SUSD3, BIK, POU2AF1, GAPDH, CD79B, CD27, SERF2, SH3TC1, TCEA1, DYNLL1, SLC2A5, C4orf3, PPP1CC, LIMD2, TKT, H2AFV, BCL7A, HMGN1, MME, USP53, TPD52, BCAS4"	Plasmablast-AICDA	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1900	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"UBE2C, HMGB2, STMN1, TUBB, PTTG1, TUBA1B, HMGN2, CDC20, CENPF, TOP2A, CCNB2, H2AFZ, NUSAP1, CDK1, HMGB1, CCNB1, TUBB4B, PLK1, CDKN3, H2AFV, HN1, RGS13, MKI67, CKS1B, BIRC5, CDCA3, ASPM, SMC4, TUBA1C, TPX2, GAPDH, ARL6IP1, KP2, LRMP, CDCA8, HMMR, BIK, CC2, CENPA, CKS2, CALM3, AURKB, CENPE, CALM2, HM"	Plasmablast-MKI67	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1901	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"STMN1, HIST1H4C, RRM2, DUT, H2AFZ, TYMS, HMGN2, HMGB2, TUBB, KIAA0101, GAPDH, TK1, MCM7, CDCA7, GINS2, PC, DHFR, HMGB1, DEK, TUBA1B, HMGA1, RGS13, CDT1, H2AFV, RANBP1, DNMT1, UHRF1, FABP5, MCM3, SLBP, CENPM, GCHFR, HMGN1, CARHSP1, ASF1B, H2AFY, GSTP1, MCM5, MEF2B, MYBL2, RMI2, PKMYT1, HNRNPAB, FEN"	Plasmablast-PC	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1902	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MEF2B, SERPI9, LRMP, ACTG1, ELL3, MYO1E, BIK, NEIL1, CAMK1, GAPDH, DEF8, UBE2J1, HMCES, BASP1, SERF2, GCHFR, KLHL6, LCP1, RGS16, CCDC88A, HMGN1, TUBB3, CD40, VNN2, ARPC2, TKT, CD38, ATP5L, LCK, ALOX5AP, RFTN1, POU2AF1, CTSH, METAP2, ACTB, CD27, PAG1, BCAS4, LPP, LIMD2, GRHPR, SEC14L1, DCAF12, SYNE"	Plasmablast-SERPI9	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1903	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"GPR183, TNFRSF13B, CRIP1, VIM, SAMSN1, LDLRAD4, S100A4, CLECL1, UBC, AHK, CAPG, RP5-887A10.1, HLA-C, TOMM7, B2M, RPS14, SSPN, RPS3A, RPL3, RPS18, RPS25, C10orf128, EEF1B2, CD82, MARCKS, JCHAIN, CD44, ADGRE5, TBC1D9, TSC22D3, S100A6, CD27, KLF6, LM, EMP3, TNFSF9, NR4A2, CD24, RSET2, CCDC50, AIM2"	Brm-CD27hi	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1904	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IFITM1, CD69, FCER2, IFITM2, FOS, VPS37B, LY6E, CLEC2B, SLC2A3, IFI44L, SELL, CHI3L2, SARAF, ZNF331, PLAC8, IGHD, C1orf162, ZFP36L2, NR4A2, CD72, CCR7, FTH1, FCMR, CXCR4, CD55, PDE4B, BTG1, FAM129C, FXYD5, RPS4Y1, HLA-A, TMSB10, HLA-E, RPS27, FTL, S1PR1, CD52, MT-ND2, HLA-DRB1, BANK1, RPS29, HLA"	Brm-CD27lo	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1905	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GPR183, PASK, ICOS, FAAH2, SLC2A3, CD28, CMTM8, CXCR5, CCR4, RNF19A, ARID5B, TNIK, AP3M2, CD4, GK, SARAF, SPOCK2, FYB, DUSP5, MALAT1, FXYD5, NDUFV2, TRAT1, CTLA4, TSHZ2, YPEL5, DDIT4, CCR7, JUNB, RNASET2, NR3C1, SRGN, ITM2A, RILPL2, SOCS3, IL6ST, METTL8"	CD4 activated	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1906	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CCR7, KLF2, LDHB, LEF1, RPL32, RPS8, RPS13, RPL22, RPS23, RPS3A, RPS12, RPL34, RPL11, RPS14, EEF1B2, RPL5, RPL30, RPL7, RPS5, EEF1G, RPL9, RPS6, RPL35A, RPS25, RPL18A, RPL29, TMSB10, RPL19, RPS27A, RPS10, RPS18, RPL3, RPL14, RPL13, RPL39, RPS9, RPL21, RPL"	CD4 naive T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1907	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CCR7, KLF2, LDHB, LEF1, RPL32, RPS8, RPS13, RPL22, RPS23, RPS3A, RPS12, RPL34, RPL11, RPS14, EEF1B2, RPL5, RPL30, RPL7, RPS5, EEF1G, RPL9, RPS6, RPL35A, RPS25, RPL18A, RPL29, TMSB10, RPL19, RPS27A, RPS10, RPS18, RPL3, RPL14, RPL13, RPL39, RPS9, RPL21, RPL"	CD4 naive T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1908	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GPR183, PASK, ICOS, FAAH2, SLC2A3, CD28, CMTM8, CXCR5, CCR4, RNF19A, ARID5B, TNIK, AP3M2, CD4, GK, SARAF, SPOCK2, FYB, DUSP5, MALAT1, FXYD5, NDUFV2, TRAT1, CTLA4, TSHZ2, YPEL5, DDIT4, CCR7, JUNB, RNASET2, NR3C1, SRGN, ITM2A, RILPL2, SOCS3, IL6ST, METTL8"	CD4+ activated T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1909	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"RP11-291B21.2, CD8B, SELL, KLF2, CCR7, AIF1, NELL2, LEF1, CD248, RPS12, RPS3A, RPS13, RPL32, RPS5, EEF1B2, RPS8, RPS14, RPS23, RPL34, RPS6, RPS10, RPL5, RPL22, RPL21, RPL14, RPS18, RPL13, RPS28, RPL19, RPL18A, RPL35A, RPL11, RPL18, RPL39, RPL30, RPS27A, R"	CD8 naive T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1910	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMK, CCL4, NKG7, CST7, GZMH, HLA-DRB1, CMC1, KLRG1, TNFSF9, PLEK, EOMES, ENC1, HLA-DPB1, HLA-DPA1, CD74, FGFBP2, PRF1, SAMD3, S1PR5, DUSP2, OASL, HLA-DQA1, F2R, ITGB2, SH2D1A, HLA-DRA, GZMM, JAKMIP1, HLA-DQB1, CCL5, HLA-B, LYST, CYBA, HCST, HLA-A, ADRB2, CRTAM, DTHD1, APOBEC3G, AHNAK, LINC0015"	CD8-GZMK	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1911	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCL4, CD8A, CCL5, SH3BGRL3, GPR34, CAPG, ALOX5AP, ID2, CD52, CD8B, NKG7, ITGAE, HOPX, CCL4L2, CD101, S100A4, ITM2C, KLRD1, GAPDH, FKBP11, JAML, ABI3, AC092580.4, AC020571.3, CXCR6, GYG1, LGALS1, ITGA1, OSTF1, CD3D, ANXA1, ACTB, LAG3, S100A6, IFNG, CD2, CD96, COTL1, CD3G, CD3E, CST7, GZMA, ASB2, TH"	CD8-ITGAE	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1912	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	NA	Dendritic cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1913	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"RPS19, RP6-159A1.4, RPLP2, RPL36, CST3, RPL37, UBA52, TMSB10, RPL32, RPS13, CLEC10A, CDH17, RPL13, RPS27, RPL28, RPL18A, RPS7, RPS15, RPL39, RPS14, RPL34, CD1C, RPS23, RPL31, NME2, RPL38, RPL29, RPL8, RPS18, RPS29, RPL27, RPL35, RPL19, RPL41, LST1, ATP5E"	Dendritic cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1914	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	NA	Dendritic cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1915	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PLVAP, PECAM1, CLDN5, FLT1, RAMP2, VWF, RNASE1, SOX18, ECSCR.1, CYYR1, CD34, GIMAP7, ESAM, RAMP3, MYCT1, GIMAP4, CDH5, EMCN, TM4SF18, TIE1, ADGRL4, ICAM2, MMRN2, BCAM, TSPAN7, RBP7, CD93, ROBO4, EHD4, CD320, SLCO2A1, PODXL, ADCY4, KDR, CXorf36, GIMAP6, SR"	Endothelial cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1916	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PLVAP, PECAM1, CLDN5, FLT1, RAMP2, VWF, RNASE1, SOX18, ECSCR.1, CYYR1, CD34, GIMAP7, ESAM, RAMP3, MYCT1, GIMAP4, CDH5, EMCN, TM4SF18, TIE1, ADGRL4, ICAM2, MMRN2, BCAM, TSPAN7, RBP7, CD93, ROBO4, EHD4, CD320, SLCO2A1, PODXL, ADCY4, KDR, CXorf36, GIMAP6, SR"	Endothelial cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1917	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enteroendocrine cells	"EEF1G, ANAPC5, GEM, CUTA, GPR160, NISCH, RPL7A, RPS12, RPS14, CMTM6, SRP14, RGS2, PLPP5, PSMC4, RANBP2, PCLO, RAMP1, ZNF10, COMMD6, PRR26, IRF8, DFNB31, GCH1, TPPP3, FAM195B, STMN1, SELK, SNU13, ARFGEF3, H3F3A, RPS23, LINC01420, GABARAP, GUCY2C, FTL, TAGL"	Enteroendocrine cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1918	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enteroendocrine cells	"EEF1G, ANAPC5, GEM, CUTA, GPR160, NISCH, RPL7A, RPS12, RPS14, CMTM6, SRP14, RGS2, PLPP5, PSMC4, RANBP2, PCLO, RAMP1, ZNF10, COMMD6, PRR26, IRF8, DFNB31, GCH1, TPPP3, FAM195B, STMN1, SELK, SNU13, ARFGEF3, H3F3A, RPS23, LINC01420, GABARAP, GUCY2C, FTL, TAGL"	Enteroendocrine cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1919	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"AC079767.4, ACP5, ADAM28, AFF3, ALG13, ALOX5, ANKRD13A, ANXA6, AP1B1, APPL1, ARHGAP17, ARHGAP24, ARHGAP25, ARL4A, ARPC3, ARRDC2, ATP6V1G1, BACH1, BACH2, BANK1, BASP1, BCAS4, BCL11A, BCL2A1, BCL7A, BIRC3, BLK, BLNK, BLOC1S2, BTG1, BTK, BTN2A2, C11orf31, C1"	Epithelial cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1920	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"AC079767.4, ACP5, ADAM28, AFF3, ALG13, ALOX5, ANKRD13A, ANXA6, AP1B1, APPL1, ARHGAP17, ARHGAP24, ARHGAP25, ARL4A, ARPC3, ARRDC2, ATP6V1G1, BACH1, BACH2, BANK1, BASP1, BCAS4, BCL11A, BCL2A1, BCL7A, BIRC3, BLK, BLNK, BLOC1S2, BTG1, BTK, BTN2A2, C11orf31, C1"	Epithelial cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1921	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"A1BG, A2M, AAMDC, ABCA1, ABCA6, ABCA8, ABCC4, ABI2, ABI3BP, AC007246.3, AC013461.1, ACKR3, ACTA2, ACTN1, ACTN4, ACVRL1, ADAM15, ADAM28, ADAM9, ADAMDEC1, ADAMTS1, ADAMTS4, ADAMTS5, ADD1, ADD3, ADGRA2, ADGRL2, ADGRL3, ADH1B, ADH5, ADIRF, ADM, AEBP1, AFAP1"	Fibroblasts_endothelial cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1922	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"VSTM2A, HSD17B2, NSG1, TRPA1, F3, SOX6, COL4A6, ENHO, COL4A5, ATP1B1, GLP2R, AGT, PTGDR2, FRZB, REEP2, PLAT, MAP1B, PDGFRA, POSTN, LRP4, PDGFD, SNTB1, DMKN, BMP2, CNTFR, IGFBP3, EDNRB, DDHD1, SCUBE2, CXCR4, PCSK6, CHST11, SEMA4D, APLP2, INSC, NRG1, CPM, S"	Fibroblasts	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1923	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CCL8, APOE, RPS7, RPL39, RPS27, RPLP1, RPS28, CFD, RPL41, RPL37, RPS19, SCARA5, CTSC, RPL28, RPS29, RPL29, RPS15A, RPL30, RPL13, RPL35A, COL3A1, RPL18A, RPL32, RPLP2, RPS12, ADAMDEC1, RPLP0, RPS15, STMN2, RPL34, RPL36, ABCA8, RPS13, RPS18, RPL10, RPS8, RP"	Fibroblasts lamina propria	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1924	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"C3, CCL19, TNFSF13B, OGN, CCDC80, ABI3BP, C7, COL14A1, PTGDS, GUCY1A3, CCL21, CXCL12, CFH, COL6A5, GREM1, THBS1, SLCO2B1, RBP5, IGF1, CCL11, FBLN1, FN1, MGP, SORCS1, ADH1B, RGMA, GPC6, ZFP36L2, C1S, ADAMTSL1, GP1BA, PRELP, ABCA10, EFEMP1, SERPINF1, CP, NF"	Fibroblasts	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1925	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"TFPI2, MAFF, NFKBIZ, CXCL1, FOSB, SOCS3, BDKRB1, NFKBIA, ZFP36, IRF8, MYC, ICAM1, PPP1R15A, DUSP1, ATF3, CSRNP1, MCL1, IER3, GEM, CDKN1A, SERTAD1, IRF1, MMP19, BTG2, SFRP1, SOD2, JUNB, DNAJB1, NAMPT, FOS, PLAUR, CCL2, CCNL1, JUN, MIR22HG, CEBPB, KLF10, PN"	Fibroblasts	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1926	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"TXNIP, KDELR2, NUDT22, XIST, LMAN1, KDELR1, FAM13A, SNHG18, TM4SF5, SEC61G, ADRBK1, RNASET2, PYCR1, ARFIP2, ICA1, C3orf52, ABLIM1, TRPT1, HYI, MGLL, ATP2C2, GLTSCR2, WNK2, NUMA1, PCBD1, GALE, NPW, TUBA4A, GSE1, UNC13B, RPS20, SLC22A23, MCTP2, SMIM14, TSPA"	Goblet cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1927	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"TXNIP, KDELR2, NUDT22, XIST, LMAN1, KDELR1, FAM13A, SNHG18, TM4SF5, SEC61G, ADRBK1, RNASET2, PYCR1, ARFIP2, ICA1, C3orf52, ABLIM1, TRPT1, HYI, MGLL, ATP2C2, GLTSCR2, WNK2, NUMA1, PCBD1, GALE, NPW, TUBA4A, GSE1, UNC13B, RPS20, SLC22A23, MCTP2, SMIM14, TSPA"	Goblet cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1928	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"MMP3, CA12, TREM1, IL11, CHI3L1, SBSN, CXCL5, WNT2, INHBA, FAP, IL24, MMP9, POPDC3, ASPHD1, CTHRC1, COL7A1, ADAM12, SLC16A3, C15orf48, HAS1, MMP1, NR1D1, IL7R, CSF3, TNFRSF21, PTPRN, SLC1A3, PRRX1, THBS2, TNFRSF11B, HMOX1, SPHK1, GAS1, MMP10, P4HA3, UCN2"	Inflammatory fibroblasts	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1929	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"MMP3, CA12, TREM1, IL11, CHI3L1, SBSN, CXCL5, WNT2, INHBA, FAP, IL24, MMP9, POPDC3, ASPHD1, CTHRC1, COL7A1, ADAM12, SLC16A3, C15orf48, HAS1, MMP1, NR1D1, IL7R, CSF3, TNFRSF21, PTPRN, SLC1A3, PRRX1, THBS2, TNFRSF11B, HMOX1, SPHK1, GAS1, MMP10, P4HA3, UCN2"	Inflammatory fibroblasts	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1930	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"CPA3, TPSAB1, TPSB2, MS4A2, HPGDS, BACE2, HDC, VWA5A, SLC18A2, KIT, HPGD, CLU, GATA2, CD9, TPSD1, GCSAML, IL1RL1, RAB27B, CNRIP1, RP11-354E11.2, CSF1, TIMP3, LAT, CTSG, CD82, MAOB, GALC, MITF, DLC1, MALAT1, GLUL, CD69, NDFIP2, SDPR, ANXA1, CTD-3252C9.4, T"	Mast cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1931	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"CPA3, TPSAB1, TPSB2, MS4A2, HPGDS, BACE2, HDC, VWA5A, SLC18A2, KIT, HPGD, CLU, GATA2, CD9, TPSD1, GCSAML, IL1RL1, RAB27B, CNRIP1, RP11-354E11.2, CSF1, TIMP3, LAT, CTSG, CD82, MAOB, GALC, MITF, DLC1, MALAT1, GLUL, CD69, NDFIP2, SDPR, ANXA1, CTD-3252C9.4, T"	Mast cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1932	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"ABI1, AC007386.4, AC079767.4, ACADM, ACAP2, ACAT2, ACOT7, ACP1, ACSF3, ACTB, ACTG1, ACTL6A, ACTR2, ACTR3, ACYP1, ADA, AFF2, AHCY, AHSA1, AICDA, AIM2, AK2, AKR1B1, AKR7A2, ALDH5A1, ALDOA, ALOX5, ANAPC11, ANAPC15, ANKRD13A, ANLN, ANP32A, ANP32B, ANP32E, ANX"	Mitotic B cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1933	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"ABI1, AC007386.4, AC079767.4, ACADM, ACAP2, ACAT2, ACOT7, ACP1, ACSF3, ACTB, ACTG1, ACTL6A, ACTR2, ACTR3, ACYP1, ADA, AFF2, AHCY, AHSA1, AICDA, AIM2, AK2, AKR1B1, AKR7A2, ALDH5A1, ALDOA, ALOX5, ANAPC11, ANAPC15, ANKRD13A, ANLN, ANP32A, ANP32B, ANP32E, ANX"	Mitotic B cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1934	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"ABCA1, ACER3, ACSL4, ACTB, ADAM8, ADAP2, ADGRE2, AHNAK, AHR, AIF1, AKR1A1, ALDH2, ANXA1, ANXA2, ANXA5, AOAH, AP1S2, AP2S1, AREG, ARHGAP18, ARL4C, ARL5B, ARPC1B, ARPC5, ARRB2, ASAH1, ATF3, ATF5, ATG3, ATOX1, ATP5E, ATP6AP1, ATP6V0B, ATP6V0D1, ATP6V1B2, ATP"	Myeloid cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1935	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"ABCA1, ACER3, ACSL4, ACTB, ADAM8, ADAP2, ADGRE2, AHNAK, AHR, AIF1, AKR1A1, ALDH2, ANXA1, ANXA2, ANXA5, AOAH, AP1S2, AP2S1, AREG, ARHGAP18, ARL4C, ARL5B, ARPC1B, ARPC5, ARRB2, ASAH1, ATF3, ATF5, ATG3, ATOX1, ATP5E, ATP6AP1, ATP6V0B, ATP6V0D1, ATP6V1B2, ATP"	Myeloid cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1936	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"MYH11, HHIP, NPNT, ACTG2, SOSTDC1, MFAP5, KCNMB1, MYOCD, ACTA2, TAGLN, HSD17B6, CNN1, MYLK, TPM1, LTBP1, FLNA, DIO2, HHIP-AS1, SYNPO2, APCDD1, SMTN, PLN, LPP, MYL9, NAT6, SORBS1, PDLIM3, TPM2, MYL6, COL4A2, LUZP2, NEO1, CARMN, NEXN, LMOD1, ADAMTS6, TRPC6"	Myofibroblasts	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1937	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"MYH11, HHIP, NPNT, ACTG2, SOSTDC1, MFAP5, KCNMB1, MYOCD, ACTA2, TAGLN, HSD17B6, CNN1, MYLK, TPM1, LTBP1, FLNA, DIO2, HHIP-AS1, SYNPO2, APCDD1, SMTN, PLN, LPP, MYL9, NAT6, SORBS1, PDLIM3, TPM2, MYL6, COL4A2, LUZP2, NEO1, CARMN, NEXN, LMOD1, ADAMTS6, TRPC6"	Myofibroblasts	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1938	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"TYROBP, FCER1G, KLRF1, ADGRG3, NCAM1, SYK, BCO2, SPTSSB, B3GNT7, FGR, KLRC1, IRF8, SH2D1B, ICAM1, EOMES, SLC15A4, CMC1, KLRD1, BHLHE40, XCL1, XCL2, GZMK, NKG7, LDB2, GZMB, PRF1, CLIC3, ITGAX, IFITM3, KRT86, CCL3, PLCG2, IGFBP2, JAG1, GSN, IL2RB, FASLG, NC"	Natural killer (NK) cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1939	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"TYROBP, FCER1G, KLRF1, ADGRG3, NCAM1, SYK, BCO2, SPTSSB, B3GNT7, FGR, KLRC1, IRF8, SH2D1B, ICAM1, EOMES, SLC15A4, CMC1, KLRD1, BHLHE40, XCL1, XCL2, GZMK, NKG7, LDB2, GZMB, PRF1, CLIC3, ITGAX, IFITM3, KRT86, CCL3, PLCG2, IGFBP2, JAG1, GSN, IL2RB, FASLG, NC"	Natural killer (NK) cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1940	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"AAK1, ABHD17A, ABI3, ABLIM1, ABRACL, AC092580.4, ACAP1, ACTB, ACTN1, ADGRE5, AES, AKAP13, AKNA, ALOX5AP, ANKRD12, ANXA1, ANXA2R, AOAH, AP3M2, APBB1IP, APMAP, APOL6, APRT, AQP3, ARAP2, ARF6, ARHGAP15, ARHGAP9, ARHGDIB, ARHGEF1, ARHGEF3, ARID4B, ARID5A, ARL"	Natural killer T (NKT) cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1941	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"GNLY, FCER1G, TYROBP, KIR2DL4, ENTPD1, LAT2, SH2D1B, B3GNT7, GRAMD3, KRT86, RP11-32B5.7, CLECL1, KLHL23, ZBTB16, ADGRG3, CDH17, KRT81, KLRF2, IRF8, ADAMTS17, GZMA, HES4, CD7, CEBPD, LDLRAD4, FGR, TMIGD2, FUCA1, MAP3K8, LDB2, CD247, FAM3C, PLCG2, HOPX, NKG"	Natural killer T (NKT) cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1942	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"AAK1, ABHD17A, ABI3, ABLIM1, ABRACL, AC092580.4, ACAP1, ACTB, ACTN1, ADGRE5, AES, AKAP13, AKNA, ALOX5AP, ANKRD12, ANXA1, ANXA2R, AOAH, AP3M2, APBB1IP, APMAP, APOL6, APRT, AQP3, ARAP2, ARF6, ARHGAP15, ARHGAP9, ARHGDIB, ARHGEF1, ARHGEF3, ARID4B, ARID5A, ARL"	Natural killer T (NKT) cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1943	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"GNLY, FCER1G, TYROBP, KIR2DL4, ENTPD1, LAT2, SH2D1B, B3GNT7, GRAMD3, KRT86, RP11-32B5.7, CLECL1, KLHL23, ZBTB16, ADGRG3, CDH17, KRT81, KLRF2, IRF8, ADAMTS17, GZMA, HES4, CD7, CEBPD, LDLRAD4, FGR, TMIGD2, FUCA1, MAP3K8, LDB2, CD247, FAM3C, PLCG2, HOPX, NKG"	Natural killer T (NKT) cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1944	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Paneth cells	"IFI27L2, TSPYL2, OGT, NR4A2, WDR6, RP11-234B24.2, SDF2L1, TRAF5, RPL12, CDKN1C, BACE2, EIF4EBP1, TSTA3, C12orf57, RPL31, ANKH, DMPK, NR4A1, NOL3, NUCB2, KIAA1324, PROM1, GPX2, RPL34, GADD45G, GRAMD1A, CRACR2A, RPL37A, SRM, RGMB, AFMID, RPL22L1, FKBP2, PRO"	Paneth cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1945	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Paneth cells	"IFI27L2, TSPYL2, OGT, NR4A2, WDR6, RP11-234B24.2, SDF2L1, TRAF5, RPL12, CDKN1C, BACE2, EIF4EBP1, TSTA3, C12orf57, RPL31, ANKH, DMPK, NR4A1, NOL3, NUCB2, KIAA1324, PROM1, GPX2, RPL34, GADD45G, GRAMD1A, CRACR2A, RPL37A, SRM, RGMB, AFMID, RPL22L1, FKBP2, PRO"	Paneth cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1946	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD163, MRC1, CD208, FCN1"	Monocyte-like cells	Tissue	Colon	32302573	Cell	Single-Cell Analyses Inform Mechanisms of Myeloid Targeted Therapies in Colon Cancer	GSE146771
1947	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tuft cells	"MECP2, ARID2, NUMB, EMC10, AK9, FAM118A, USP22, CAMTA2, ARGLU1, FGGY, VGLL4, H1F0, CHD2, GGT7, AKT2, CTDSP2, HMGB1, TMEM45B, MBD4, PLEKHA1, RPS27L, SMARCA4, TMC5, SOS1, PCLO, DDX6, C10orf54, BNIP3L, MBD6, ATF7IP2, C1RL-AS1, TESK2, CLDN12, MICAL2, CD63, RN"	Tuft cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1948	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Tissue	Colon	31744515	Genome Biol	Systematic comparative analysis of single-nucleotide variant detection methods from single-cell RNA sequencing data	NA
1949	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"ENG, COL1A2, ACTA2"	Fibroblasts	Tissue	Colon	31744515	Genome Biol	Systematic comparative analysis of single-nucleotide variant detection methods from single-cell RNA sequencing data	NA
1950	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD163"	Macrophages	NA	Colon	32785653	JOURNAL OF EXPERIMENTAL MEDICINE	Macrophage morphology correlates with single-cell diversity and prognosis in colorectal liver metast	NA
1951	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"IL1B, IL6, S100A8, S100A9"	Pro-inflammatory macrophage	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1952	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD163, MRC1, CD206, IL1B, NLRP3, PLTP"	Resident macrophages	Tissue	Colon	32302573	Cell	Single-Cell Analyses Inform Mechanisms of Myeloid Targeted Therapies in Colon Cancer	GSE146771
1953	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"S100A8, S100A9, S100A12, FCN1, VCAN, THBS1, SERPINB2"	Small Tumor-associated macrophages	NA	Colon	32785653	JOURNAL OF EXPERIMENTAL MEDICINE	Macrophage morphology correlates with single-cell diversity and prognosis in colorectal liver metast	NA
1954	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mait cells	IL23R	Mait cells	Tissue	Colon	32747828	Nature medicine	Single-cell atlas of colonic CD8+ T cells in ulcerative colitis	GSE114724
1955	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"ABHD17A, ABI3, ABRACL, ACAA2, ACAT2, ACOT7, ACTB, ACTG1, ACTL6A, ACTR2, ACTR3, ACYP1, ADA, ADRM1, ADSL, AIP, AKR1B1, AKR7A2, ALDOA, ALOX5AP, ANAPC11, ANAPC15, ANLN, ANP32A, ANP32B, ANP32E, ANXA2, ANXA5, AP1M1, AP1S1, AP2M1, AP2S1, APOBEC3C, AQP3, ARF5, AR"	Mitotic T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1956	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"ABHD17A, ABI3, ABRACL, ACAA2, ACAT2, ACOT7, ACTB, ACTG1, ACTL6A, ACTR2, ACTR3, ACYP1, ADA, ADRM1, ADSL, AIP, AKR1B1, AKR7A2, ALDOA, ALOX5AP, ANAPC11, ANAPC15, ANLN, ANP32A, ANP32B, ANP32E, ANXA2, ANXA5, AP1M1, AP1S1, AP2M1, AP2S1, APOBEC3C, AQP3, ARF5, AR"	Mitotic T cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1957	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MS4A1, CD40, TNFRSF13B"	Memory B cells	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1958	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CXCR5, TCL1A, FCER2"	Follicular B cells	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1959	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"SDC1, CD38"	Plasma cells	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1960	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CXCR5, ICOS"	Follicular helper cells	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1961	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"SELL, CCR7"	Central memory T cells	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1962	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CCR6, IL22, CCL20"	Th17	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1963	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CXCR3, IFNG"	Th1	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1964	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"XCR1, CADM1, CLEC9A, BATF3, IDO1"	CDC1	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1965	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC10A, CD86"	CDC2	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1966	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1967	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A1	Fibroblasts	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1968	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD68"	Monocytes	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1969	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LILRA4, LILRB4"	Plasmacytoid DCs	Tissue	Colon	32302573	Cell	Single-Cell Analyses Inform Mechanisms of Myeloid Targeted Therapies in Colon Cancer	GSE146771
1970	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, FCER1A"	Conventional DC2	Tissue	Colon	32302573	Cell	Single-Cell Analyses Inform Mechanisms of Myeloid Targeted Therapies in Colon Cancer	GSE146771
1971	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"XCR1, BATF3"	Conventional DC1	Tissue	Colon	32302573	Cell	Single-Cell Analyses Inform Mechanisms of Myeloid Targeted Therapies in Colon Cancer	GSE146771
1972	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, TPSAB2, CPA3, MS4A2, KIT"	Mast cells	Tissue	Colon	32302573	Cell	Single-Cell Analyses Inform Mechanisms of Myeloid Targeted Therapies in Colon Cancer	GSE146771
1973	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	RGS5	Pericytes	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
1974	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"LGI4, COX4I2, CMTM5, MYOT, RGS5, RGS16, ATP1A2, NRXN1, LPL, EGFLAM, S100B, MAL, IL17B, HAND2, C2orf40, MIA, CDH19, CADM2, SEMA5B, SOX10, STEAP4, GPM6B, MPZ, HEYL, ANGPT2, PLEKHB1, KCNJ8, CD36, PCSK2, FGFBP2, LRRTM1, PTPRZ1, GFRA3, FHL5, SOX2, FOXD3-AS1"	Pericytes	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1975	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"LGI4, COX4I2, CMTM5, MYOT, RGS5, RGS16, ATP1A2, NRXN1, LPL, EGFLAM, S100B, MAL, IL17B, HAND2, C2orf40, MIA, CDH19, CADM2, SEMA5B, SOX10, STEAP4, GPM6B, MPZ, HEYL, ANGPT2, PLEKHB1, KCNJ8, CD36, PCSK2, FGFBP2, LRRTM1, PTPRZ1, GFRA3, FHL5, SOX2, FOXD3-AS1"	Pericytes	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1976	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD163, MRC1, CD208, C1QC, SPP1"	Tumor associated macrophages	Tissue	Colon	32302573	Cell	Single-Cell Analyses Inform Mechanisms of Myeloid Targeted Therapies in Colon Cancer	GSE146771
1977	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	SDC1	Plasma cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
1978	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	MZB1	Plasma cells	Tissue	Colon	31270164	Gut	High-dimensional cytometric analysis of colorectal cancer reveals novel mediators of antitumour immunity	NA
1979	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"ALG5, ANKRD28, ARSA, CCPG1, CCR10, CD27, CHPF, CRELD2, DERL3, DNAJB9, DNAJC1, DNAJC3, DUSP5, EAF2, ELL2, ERLEC1, ERN1, FAM46C, FCRL5, FKBP11, FKBP2, FNDC3A, FNDC3B, GLA, GMPPB, GNG7, HDLBP, HERPUD1, HIST1H2BC, HM13, HSP90B1, HSPA1B, IGHA1, IGHA2, IGHG1, I"	Plasma cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1980	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"ALG5, ANKRD28, ARSA, CCPG1, CCR10, CD27, CHPF, CRELD2, DERL3, DNAJB9, DNAJC1, DNAJC3, DUSP5, EAF2, ELL2, ERLEC1, ERN1, FAM46C, FCRL5, FKBP11, FKBP2, FNDC3A, FNDC3B, GLA, GMPPB, GNG7, HDLBP, HERPUD1, HIST1H2BC, HM13, HSP90B1, HSPA1B, IGHA1, IGHA2, IGHG1, I"	Plasma cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1981	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"JCHAIN, IGHA1, IGHA2, TNFRSF17, CD48, EMP3, LGALS1, RPS4Y1, CCR10, SPINK2, IL2RG, HSPB1, S100A6, TIMP1, VIM, KRTCAP2, HSPA1B, HSPA1A, NFKBIA, IGLV2-8, MIR155HG, IGKV3-11, CCL5, PABPC4, IGHV3-7, AHNAK, DNAJB1, IGLV2-11, LMNA, IGLV6-57, IGLV1-44, CCL3, ATF3"	Plasma cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1982	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGHG3, CHST2, RASSF6, IGHG1, IGHG4, IGHGP, RGS13, DNAAF1, CD79A, MALAT1, CYTIP, BHLHE41, XBP1, LINC-PINT, FAM107B, CREM, SAMSN1, CCDC88A, PRDM1, TP53INP1, ITPR2, IL10RA, EIF2AK4, XIST, RHOH, ST6GAL1, RFTN1, RAB30, EIF5, CPEB4, RIC1, RNGTT, BCL2L11, SYNE2"	Plasma cells	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
1983	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IRF4, SELL"	Plasmacytoid dentritic cells	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
1984	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1985	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, FCER1A"	Dendritic cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1986	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1987	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"AGR2, SOX9, MKI67, PC, OLFM4"	Stem-like/transit amplifying cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1988	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"TFF3, SPINK1, AGR2"	Goblet cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1989	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	GUCA2B	Mature colonocytes type 1	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1990	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"GUCA2B, SLC26A3"	Mature colonocytes type 2	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1991	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"HPGDS, PTGS1"	Tuft cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1992	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	DCN	Fibroblasts_endothelial cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1993	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	KIT	Mast cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1994	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD68	Myeloid cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1995	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"TAGLN, ACTA2, MYH11, MYLK, MMP1, MMP3"	Myofibroblasts	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1996	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"APOE, CCL8, ADAMEC1, CTSC"	Myofibroblasts-S1	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1997	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"BMP2, BMP5, FRZB, POSTIN, WNT5A"	Myofibroblasts-S2	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1998	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"CCDC80, OGN, FBLN1, EFEMP1"	Myofibroblasts-S3	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
1999	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"XCL1, FCGR3A, KLRD5, KLRF1"	Natural killer (NK) cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2000	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	CD3D	Natural killer T (NKT) cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2001	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"TAGL, ACTA2, RGS5"	Pericytes	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2002	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"TAGLN, ACTA2, MYH11, SYNPO2, CNN1, DES"	Vascular smooth muscle cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2003	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"SOX10, S100B, PLP1"	Enteric glial cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2004	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, IL7R, CD8A, CD8B"	CD4+/CD8+	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2005	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, IL7R, CD8A, CD8B"	CD4+/CD8+	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2006	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRGC1, TRGC2, TRDC"	Gamma delta T cells	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2007	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	L1CAM	Epithelial cells	Tissue	Colon	32656539	Nat Cancer	L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer	GSE112555ï¼_SE117783
2008	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	LGR5	Stem cells	Tissue	Colon	32656539	Nat Cancer	L1CAM defines the regenerative origin of metastasis-initiating cells in colorectal cancer	GSE112555ï¼_SE117783
2009	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"BATF, MIR4435-2HG, CTLA4, FOXP3, TNFRSF4, LINC00152, MAF, LGMN, AC017002.1, LAIR2, IL2RA, ZC2HC1A, IL1R1, CCR8, PBXIP1, PHTF2, ZC3H12D, GK, CXCR6, TNFRSF1B, TNFRSF18, CD2, FRMD4B, TMEM173, CDKN2A, CD4, DNPH1, F5, CAMK1, CLEC7A, PRDM1, IL10, GPX1, SPOCK2"	Regulatory T cells (Treg)	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
2010	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"BATF, MIR4435-2HG, CTLA4, FOXP3, TNFRSF4, LINC00152, MAF, LGMN, AC017002.1, LAIR2, IL2RA, ZC2HC1A, IL1R1, CCR8, PBXIP1, PHTF2, ZC3H12D, GK, CXCR6, TNFRSF1B, TNFRSF18, CD2, FRMD4B, TMEM173, CDKN2A, CD4, DNPH1, F5, CAMK1, CLEC7A, PRDM1, IL10, GPX1, SPOCK2,"	Regulatory T cells (Treg)	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
2011	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA"	Regulatory T cells (Treg)	Tissue	Colon	32066951	Nat Immunol	Distinct microbial and immune niches of the Human colon	gutcellatlas.org
2012	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL2RA, FOXP3, IKZF2, IL4R, TGFB1"	Regulatory T cells (Treg)	Tissue	Colon	32451460	Nat Genet	Lineage-dependent gene expression programs influence the immune landscape of colorectal cancer	NA
2013	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD6, LAYN, GNLY"	CD8 T cells	Tissue	Colon	32747828	Nature medicine	Single-cell atlas of colonic CD8+ T cells in ulcerative colitis	GSE114724
2014	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Tissue	Colon	32788668	Nat Biotechnol	Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling	GSE142745
2015	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VEcad, CD31, VEGFR2"	Endothelial cells	Organoids	Colon	32908310	Nature	Adaptable haemodynamic Endothelial cellss for organogenesis and tumorigenesis.	GSE148996
2016	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, CDH1, KRT19"	Epithelial cells	Organoids	Colon	32908310	Nature	Adaptable haemodynamic Endothelial cellss for organogenesis and tumorigenesis.	GSE148996
2017	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, LTB, CXCL13, TNFRSF4, TRBC2, CD3E, TRBC1, CD3D, CD2, TRAC, CD7, TNFRSF18"	Activated T cells	Tissue	Colon	31217164	Cancer Immunol Res	Intrinsic Resistance to Immune Checkpoint Blockade in a Mismatch Repair-Deficient Colorectal Cancer.	NA
2018	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"HOPX, CCL5, KIR2DL4, GZMA, FCER1G, LGALS1, ITGA1, CD63, KLRD1, CD7, ITGAE, TMIGD2, RHOC, GSTP1, LDLRAD4, MAP3K8, GPR65, ENTPD1, CAPG, PLPP1, NKG7, SLA2, TIGIT, SH2D1B, CD96, RGS1, GAPDH, CLIC3, ID3, CD247, RP11-277P12.6, LAT2, ABI3, RARRES3, PTPN22, GZMB, MT-CO1, ALOX5AP, ACP5, GPR15, SYTL3, TPI"	CD8 & gammadeltaT-ENTPD1	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
2019	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"IFITM3, ITM2C, IFITM2, CTSW, ZNF683, CXCR3, CD7, KLRC3, FCRL3, FCRL6, CD9, FOS, MATK, IFITM1, CCL5, SYNGR1, NUCB2, MGLL, IKZF2, SPINT2, AOAH, KLRD1, TRGV2, LDLRAD4, TRG-AS1, CRTAM, TRGV8, HCST, CD99, TRDC, CD63, TRGV4, PLK2, CXXC5, FAM173A, PRMT9, HMGN3, CLIC1, LEF1, KIR3DL2, FXYD2, S100A10, RIN3"	CD8 & gammadeltaT-ZNF683	Tissue	Colon	31730855	Cell	Mucosal Profiling of Pediatric-Onset Colitis and IBD Reveals Common Pathogenics and Therapeutic Pathways	GSE121381
2020	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Conjunctival cells	"KRT4, KRT7, KRT13"	Conjunctival cells	Tissue	Cornea	33388438	Ocul Surf	Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of Human cornea	GSE153515
2021	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"TCF4, POSTN, A2M"	Limbal stem cell (lsc)	Tissue	Cornea	33388438	Ocul Surf	Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of Human cornea	GSE153515
2022	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Differentiated cells	"KRT12, KRT3, GJA1, KRT3, KRT12, SPRR2A, SPRR1B, IVL"	Terminally differentiated cells (TDCs)	Tissue	Cornea	33388438	Ocul Surf	Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of Human cornea	GSE153515
2023	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Differentiated cells	"KRT12, KRT3, GJA1, KRT3, SPRR2A, SPRR1B, IVL"	Post-mitotic cells (PMCs)	Tissue	Cornea	33388438	Ocul Surf	Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of Human cornea	GSE153515
2024	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	"TYR, TYRP1, MLANA"	Melanocytes	Tissue	Cornea	33388438	Ocul Surf	Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of Human cornea	GSE153515
2025	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"KRT14, KRT15, KRT19, SLC2A3, ITM2A, POSTN, TCF4, DCN, PLIN2DEGS1, MMP10, IFITM3, SLC6A6, LTB4R, SLPI"	Limbal progenitor cells (LPCs)	Tissue	Cornea	33388438	Ocul Surf	Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of Human cornea	GSE153515
2026	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amplifying cell	"MKI67, BIRC5, RRM2, BIRC5, RRM2, TOP2A, MKI67, PLK1"	Transiently amplifying cells (TACs)	Tissue	Cornea	33388438	Ocul Surf	Single-cell transcriptomics identifies limbal stem cell population and cell types mapping its differentiation trajectory in limbal basal epithelium of Human cornea	GSE153515
2027	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	"FOXJ1, TUBB1, TP73, CCDC78"	Ciliated cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2028	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	"CYP2F2, SCGB3A2, CCKAR"	Club cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2029	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD68, ITGAM, ITGAX, CSF1R, CD14"	Mononuclear progenitors	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2030	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	"AGER, PDPN, CLIC5"	Alveolar Type 1 Cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2031	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	"SFTPB, SFTPC, SFTPD, MUC1, ETV5"	Alveolar Type 2 Cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2032	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, CD19, MS4A1"	B cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2033	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT5, KRT14, TP63, DAPL1"	Basal cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2034	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, ICAM2, KDR, ERG"	Endothelial cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2035	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CDH1, EPCAM, CLDN7"	Epithelial cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2036	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"KLRF1, KLRC1, GZMA, GZMB, NKG7"	Innate lymphoid cells (ILCs)	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2037	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"KIT, TPSAB1, TPSB2"	Mast cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2038	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"PDGFRB, ACTA2, COL1A2, COL1A1, COL3A1, DES, DCN"	Mesenchymal cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2039	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, CD8A, CD4, CD2"	T cells	Tissue	Cystic adenomatoid	32979365	Exp Cell Res	Single-cell transcriptome profiling reveals the mechanism of abnormal proliferation of epithelial cells in congenital cystic adenomatoid malformation	NA
2040	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endometrial cells	"PAEP, DEFB1"	Endometrial cells	Tissue	Decidua	33300223	Cell Prolif	Single-cell RNA sequencing reveals heterogeneity and differential expression of decidual tissues during the peripartum period.	NA
2041	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"IGFBP1, PRL"	Decidual stromal cells	Tissue	Decidua	33300223	Cell Prolif	Single-cell RNA sequencing reveals heterogeneity and differential expression of decidual tissues during the peripartum period.	NA
2042	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD86, CD80, CD83"	Dendritic cells	Tissue	Decidua	33300223	Cell Prolif	Single-cell RNA sequencing reveals heterogeneity and differential expression of decidual tissues during the peripartum period.	NA
2043	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, COL1A2, COL3A1"	Fibroblasts	Tissue	Decidua	33300223	Cell Prolif	Single-cell RNA sequencing reveals heterogeneity and differential expression of decidual tissues during the peripartum period.	NA
2044	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MSC, MYH11, FOXS1, ACTA2"	Smooth muscle cells	Tissue	Decidua	33300223	Cell Prolif	Single-cell RNA sequencing reveals heterogeneity and differential expression of decidual tissues during the peripartum period.	NA
2045	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pluripotency cells	"NANOG, OCT4"	Pluripotency cells	Cell line	Dermal fibroblast	30982595	Cell	Human Pluripotency Is Initiated and Preserved by a Unique Subset of Founder Cells	GSE126022
2046	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ectoderm cells	PAX6	Ectoderm cells	Cell line	Dermal fibroblast	30982595	Cell	Human Pluripotency Is Initiated and Preserved by a Unique Subset of Founder Cells	GSE126022
2047	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endoderm cells	"GATA6, GATA4, HNF1B, SOX17"	Primitive endoderm cells	Cell line	Dermal fibroblast	30982595	Cell	Human Pluripotency Is Initiated and Preserved by a Unique Subset of Founder Cells	GSE126022
2048	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dox(5ng) enriched	"HHEX, CD99"	Dox(5ng) enriched	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2049	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Eosin.precursors	GATA2	Eosin.precursors	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2050	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gmp-like cells	LYZ	Gmp-like cells	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2051	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Liver	"FRZB, PTN"	Liver	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2052	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Undetermined cells	"NR2F, LHX2"	Undetermined cells	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2053	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Undifferentiated stem-like cells	"TERF1, POU5F1"	Undifferentiated stem-like cells	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2054	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"GDF15, DDIT3"	Endothelial cells	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2055	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"PODXL, IGFBP5"	Epithelial cells	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2056	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"HAPLN1, S100A11"	Muscle cells	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2057	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Eosinophils	CEBPE	Eosinophils	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2058	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"DLK1, PRSS23, VIM, ATP5G2, MEST, RPL6, CIRBP, RPL5, ZNF436-AS1, IGFBP5, MALAT1, IGFBP2, EIF3E, PFDN5, NNAT, EIF3F, EIF3L, FGF8, CCNI, PLP1, TTYH1, PCBP2, ESD, CRABP1, PMEL, SLC25A3, COMMD6, FABP7, NPC2, TUBA1A, SIX3, COTL1, FRZB, TPBG, SOX3, EIF4A2, CSRP2, PTN, KDELR1, EIF3H, COL2A1, ERGIC3, SAT1"	Epithelial progenitors	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2059	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"HAPLN1, S100A11, KRT18, KRT8, CXCL14, DLX5, CLDN4, GATA3, TFAP2A, SEMA3E, ADAM28, ERP27, FAM89A, LY6E, RAB25, MAFB, STOM, KRT19, PERP, DSP, PRSS8, ANXA2, TPD52L1, CYP1B1, TMEM54, GNAS, CLDN6, SMAGP, STAP2, ANXA3, TMSB10, CAST, HPGD, CDH1, SAT1, DSC2, SOX15, SHISA2, ABRACL, TAGLN2, S100A16, PDLIM"	Muscle progenitors	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2060	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"LHX5-AS1, RP11-148B6.1, LMO1, HESX1, LHX5, CYP26A1, TNNT1, SHISA2, SFRP1, FEZ1, TMSB4X, SNRPN, NME4, PKDCC, CLDN6, CITED2, GNPNAT1, ENC1, ZIC2, SET, FGFR1, HMGB1, NR6A1, LIN28A, CNTNAP2, DMKN, FGFBP3, SLIRP, CARHSP1, APRT, FJX1, RANBP1, FERMT2, SNRPD1, DPYSL3, TPM1, APOE, ALPL, CTSC, GCSH, FEZF"	Neural progenitors	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2061	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	SPINK2	CD34 myeloid cells	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2062	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	"HBA1, GYP3"	Early enterocytes	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2063	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"CCL5, CD9"	Erythrocytes	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2064	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Organoids	Embryoid body	32460028	Cell Rep	Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells.	GSE137673
2065	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"SFRP2, COL2A1"	Stromal cells	Organoids	Embryoid body	30827876	Stem Cell Reports	Single-Cell RNA Sequencing of Human Embryonic Stem Cell Differentiation Delineates Adverse Effects of Nicotine on Embryonic Development	GSE125416
2066	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cluster1	"CTIP2, FEZF2, L1CAM, NRN1"	Cluster1	Organoids	Embryonic stem cells	30886407	Nature Neuroscience	Cerebral organoids at the air_liquid interface generate diverse nerve tracts with functional output	GSE124174
2067	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cluster2	"SATB2, EOMES, L1CAM, NRN1, CTIP2, FEZF2, L1CAM, NRN1"	C1	Organoids	Embryonic stem cells	30886407	Nature Neuroscience	Cerebral organoids at the air_liquid interface generate diverse nerve tracts with functional output	GSE124174
2068	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cluster3	"GFAP, FAM107A, SATB2, EOMES, L1CAM, NRN1"	C2	Organoids	Embryonic stem cells	30886407	Nature Neuroscience	Cerebral organoids at the air_liquid interface generate diverse nerve tracts with functional output	GSE124174
2069	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cluster4	"FOXP2, CUX2, VGLUT2, CNTP2, SYT4, GFAP, FAM107A"	C3	Organoids	Embryonic stem cells	30886407	Nature Neuroscience	Cerebral organoids at the air_liquid interface generate diverse nerve tracts with functional output	GSE124174
2070	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cluster5	"DLX2, DLX5, ERBB4, VGAT, FOXP2, CUX2, VGLUT2, CNTP2, SYT4"	C4	Organoids	Embryonic stem cells	30886407	Nature Neuroscience	Cerebral organoids at the air_liquid interface generate diverse nerve tracts with functional output	GSE124174
2071	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cluster6	"CENPE, EOMES, GLAST, TOP2A, DLX2, DLX5, ERBB4, VGAT"	C5	Organoids	Embryonic stem cells	30886407	Nature Neuroscience	Cerebral organoids at the air_liquid interface generate diverse nerve tracts with functional output	GSE124174
2072	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Deep-layer neuron	TBR1	Deep-layer neuron	Cell line	Embryonic stem cells	30639214	Stem Cell Reports	Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.	GSE120702
2073	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Diencephalon	BARHL1	Diencephalon	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2074	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dorsal mhb	TLX3	Dorsal mhb	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2075	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cajal-Retzius cells	"TBR1, EOMES, LHX9, NHLH1"	Early-forming cajal-retzius	Cell line	Embryonic stem cells	30639214	Stem Cell Reports	Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.	GSE120702
2076	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Floor plate	"FOXA1, FOXA2, SHH"	Floor plate	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2077	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Forebrain	TRH	Forebrain	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2078	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Foregut epi	"ELF3, PAX9, KRT4"	Foregut epi	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2079	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Foregut epi	"FOXJ1, CDHR3"	Airway epi	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2080	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gut	"CDX1, CDX2, HHEX, FOXJ1, PAX9, SOX2"	Gut	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2081	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hindbrain cells	"NKX6-2 , PHOXB2, HOXB2"	Hindbrain cells	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2082	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ganglion cells	"THY1, Brn, RBPMS"	Human embryonic stem cell-derived retinal ganglion cells	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2083	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ln-normalised top marker genes	"NCOA7, SPRR2F, ACTA2, CYP26A1, EMX2, PERP, PTH, TH, STMN2, POU5F1, NANOS3, GATA4, FGF23, DLL4, JAG1, HEY2"	Ln-normalised top marker genes	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2084	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mhb	"FGF8, WNT1"	Mhb	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2085	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mid_hindgut epi	"ELF3, CDX2"	Mid/hindgut epi	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2086	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Msc	THY1	Msc	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2087	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	WT1	Kidney prog	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2088	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Perivascular cells	"ACTA2, ACTC1, CSPG4"	Perivascular cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2089	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Presumptive diencephalic part	OTX2	Presumptive diencephalic part	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2090	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Retinal epi	"OTX2, MITF, FOXJ1"	Retinal epi	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2091	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Venous cells	"APLNR, NR2F2, NT5E"	Venous cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2092	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ventral forebrain	"NKX2-1, SIX6, NKX6-1"	Ventral forebrain	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2093	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Arterial cells	"NOTCH1, SOX7, SOX17, NRP1, EST1, CD93"	Arterial cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2094	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Arterial cells	"GJA5, HEY2, SOX7, SOX17, NOTCH1, NRP1, KDR"	Arterial cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2095	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	CD74	Immune cells	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2096	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"CD34, HHEX"	HSC	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2097	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	GYPA	Erythrocytes	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2098	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	SOX10	Neural crest cells	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2099	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SOX2, HES5"	Radial glia	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2100	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SOX2, HMGB2"	CycProg	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2101	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	PAX6	Neural stem cells	Cell line	Embryonic stem cells	30639214	Stem Cell Reports	Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.	GSE120702
2102	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"HES3 , NR2F1"	Neuroepithelial cells	Cell line	Embryonic stem cells	30639214	Stem Cell Reports	Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.	GSE120702
2103	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"STMN2, ASCL1, CADM1"	Neuronal cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2104	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"FOXC1, CYP1B1"	Pericytes	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2105	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	STMN2	Postmitotic neurons	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2106	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"HBE1, HBZ, HBA2"	Primitive erythroid progenitors	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2107	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	DRD4	Radial glia cells subtypes 1	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2108	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	TRH	Radial glia cells subtypes 2	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2109	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	CDH6	Radial glia cells subtypes 3	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2110	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	PAX6	Radial glia cells subtypes 4	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2111	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	SDK2	Radial glia cells subtypes 5	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2112	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	JAM2	Radial glia cells subtypes 6	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2113	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	PVALB	Radial glia cells subtypes 7	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2114	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	TYW3	Radial glia cells subtypes 8	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2115	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	SPP1	Radial glia cells subtypes 9	Cell line	Embryonic stem cells	29437159	Sci Data	Single cell RNA sequencing of stem cell-derived retinal ganglion cells	NA
2116	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	"SOX2, EMX2, NNAT, PTN, TLE4"	Radial glia cells	Cell line	Embryonic stem cells	30639214	Stem Cell Reports	Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes.	GSE120702
2117	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	MPZ	Schwann cells	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2118	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	"MITF, SOX10, MLA"	Melanoblasts	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2119	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CD34"	Endothelial cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2120	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	GYPA	Erythrocytes	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2121	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	"CD41, CD43, CD45"	Hematopoietic stem cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2122	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	ACE	Hematopoietic stem cells	Cell line	Embryonic stem cells	32946788	Cell Stem Cell	Multi-layered Spatial Transcriptomics Identify Secretory Factors Promoting Human Hematopoietic Stem Cell Development	GSE151877
2123	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, ITM2A, SHOX2"	Adipogenic MSC/Fib	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2124	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL2A1, SOX9"	Chondrogenic MSC/Fib	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2125	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL14A1"	MSC/Fib	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2126	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, HMGB2"	Cycling MSC/Fib	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2127	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL15A1"	MyoFib	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2128	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MYOD1, PAX7"	Muscle cells	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2129	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MYOD1, TNNI1, TNNT2"	Cardiac/skeletal muscle	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2130	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"DCX, MAP2"	Early neurons	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2131	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"OTX2, NRL"	Retinal neurons	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2132	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"ACTA2, RGS5"	Smooth muscle	Cell line	Embryonic stem cells	33152263	Cell	Defifining the Teratoma as a Model for Multi-lineage Human Development	GSE156170
2133	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"SIX3, SIX6, NKX2-1"	Ventral forebrain progenitors	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2134	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"EN1, LMX1A, RSPO2, FOXA2"	Ventral midbrain progenitors	Cell line	Embryonic stem cells	32451506	Nat Biotechnol	Modeling neural tube development by differentiation of human embryonic stem cells in a microfluidic WNT gradient	GSE135399
2135	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endoderm cells	"FOXA2, HHEX, CXCR4"	Endoderm cells	Tissue	Embryos	29520097	Nat Commun	An accurate and robust imputation method scImpute for single-cell RNA-seq data	GSE75748
2136	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"SPI1, SPINK2"	Hematopoietic-related cells	Tissue	Embryos	31501518	Cell Res	Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing	GSE135202
2137	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"GJA5, GJA4, HEY2, CXCR4"	Arterial endothelial cells	Tissue	Embryos	31501518	Cell Res	Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing	GSE135202
2138	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"APLNR, NRP2, NT5E"	Endothelial cells	Tissue	Embryos	31501518	Cell Res	Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing	GSE135202
2139	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	CDX2	Epithelial cells	Tissue	Embryos	31501518	Cell Res	Tracing the first hematopoietic stem cell generation in human embryo by single-cell RNA sequencing	GSE135202
2140	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"HES6, DCX, MAP2"	Neural stem/progenitor cells pax6	Tissue	Embryos	31465303	JCI Insight	Precocious neuronal differentiation and disrupted oxygen responses in Kabuki syndrome	GSE126027
2141	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	"PF4, PPBP"	Platelet	Tissue	Embryos	33340451	Cell Stem Cell	Decoding Human Megakaryocyte Development.	GSE144024
2142	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	THBS1	Megakaryocyte-biased endothelial cells	Tissue	Embryos	33340451	Cell Stem Cell	Decoding Human Megakaryocyte Development.	GSE144024
2143	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"CD41a, CD42b, SELP, GP1BA, CD9, ITGA2B"	Megakaryocytes	Tissue	Embryos	33340451	Cell Stem Cell	Decoding Human Megakaryocyte Development.	GSE144024
2144	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hemogenic endocardial cell	"ETS1, EGFL7, HOPX, SCL, TAL1"	Hemogenic endocardial cell	Cell line	Endocardial cells	31028265	Nat Commun	Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis	GSE73546
2145	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Highly proliferative cells	"GTSE1, CENPF, AURKA, BIRC5, TPX2"	Highly proliferative cells	Cell line	Endocardial cells	31028265	Nat Commun	Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis	GSE73546
2146	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tgfbeta signaling pathway	"BAMBI, TGFbeta1, PDGFRalpha"	Tgfbeta signaling pathway	Cell line	Endocardial cells	31028265	Nat Commun	Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis	GSE73546
2147	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, ENG, PECAM1, KLF2, NOTCH4, SOX17, SOX18, KDR, ETS"	Endothelial cells	Cell line	Endocardial cells	31028265	Nat Commun	Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis	GSE73546
2148	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"SOX18, LATEXIN, FICOLIN3, HOXP1, CARBONIC-ANYDRASE, CD40, CD55, CX37"	Hematopoietic cells	Cell line	Endocardial cells	31028265	Nat Commun	Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis	GSE73546
2149	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"MPST, PAX8"	Secretory cells	Organoids	Endometrium	32686114	"The Journal of Pathology,"	Single cell transcriptomes of normal endometrial derived organoids uncover novel cell type markers and cryptic differentiation of primary tumours	EGAS00001004466
2150	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	MPST	Secretory cells	Tissue	Endometrium	32686114	"The Journal of Pathology,"	Single cell transcriptomes of normal endometrial derived organoids uncover novel cell type markers and cryptic differentiation of primary tumours	EGAS00001004466
2151	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	"FAM92B, WDR16, DYDC2"	Ciliated cells	Organoids	Endometrium	32686114	"The Journal of Pathology,"	Single cell transcriptomes of normal endometrial derived organoids uncover novel cell type markers and cryptic differentiation of primary tumours	EGAS00001004466
2152	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	"DYDC2, CTH, FOXJ1, p73"	Ciliated cells	Tissue	Endometrium	32686114	"The Journal of Pathology,"	Single cell transcriptomes of normal endometrial derived organoids uncover novel cell type markers and cryptic differentiation of primary tumours	EGAS00001004466
2153	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, CD34, KLF2, ECSCR"	Early Endothelial cells	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2154	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, CDH5, ERG, FLT1"	Mature Endothelial cells	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2155	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, ACTA2"	Mesenchymal cell	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2156	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, TNNT2"	Cardiac cell	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2157	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, KIT"	Hematopoietic cells	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2158	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, KDR, CDH5"	Pan-endothelial cells	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2159	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, NRP1, EFNB2, NOTCH1"	Arterial Endothelial cells	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2160	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, EPHB4, NR2F2, NOTCH4"	Venous Endothelial cells	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2161	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, APLNR, GJA5, ESM1, PROX1, PDPN"	Lymphatic endothelial cells (LECs)	Tissue	Endothelium	29986945	Circ Res	Large-Scale Single-Cell RNA-Seq Reveals Molecular Signatures of Heterogeneous Populations of Human Induced Pluripotent Stem Cell-Derived Endothelial cellss	NA
2162	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"AQP4, SLC1A2, ADGRV1"	Astrocytes	Tissue	Entorhinal cortex	31768052	Nature Neuroscience	A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation	GSE138852
2163	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, CLDN5"	Endothelial cells	Tissue	Entorhinal cortex	31768052	Nature Neuroscience	A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation	GSE138852
2164	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"HLA-DRA, CX3CR1, C1QB, CSF1R, KCNQ3"	Microglia cells	Tissue	Entorhinal cortex	31768052	Nature Neuroscience	A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation	GSE138852
2165	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SYT1, GRIK2, GRIA1, GRIN2B, RBFOX1"	Neurons	Tissue	Entorhinal cortex	31768052	Nature Neuroscience	A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation	GSE138852
2166	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"PCDH15, MEGF11"	Oligodendrocyte progenitors	Tissue	Entorhinal cortex	31768052	Nature Neuroscience	A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation	GSE138852
2167	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MOBP, MBP, PLP1"	Oligodendrocytes	Tissue	Entorhinal cortex	31768052	Nature Neuroscience	A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation	GSE138852
2168	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"OLIG1, APOD, PDGFRA"	Oligodendroglial precursors	NA	Ependymoma	32663469	Cancer Cell	Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma	GSE141460
2169	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"IFITM1, CAV1, TM4SF1"	Endothelial cells	NA	Ependymoma	32663469	Cancer Cell	Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma	GSE141460
2170	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CD14, FCER1G, CSF1R"	Microglia cells	NA	Ependymoma	32663469	Cancer Cell	Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma	GSE141460
2171	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MBP, PLP1, MOG"	Oligodendrocytes	NA	Ependymoma	32663469	Cancer Cell	Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma	GSE141460
2172	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD4, CD8A"	T cells	NA	Ependymoma	32663469	Cancer Cell	Single-Cell RNA-Seq Reveals Cellular Hierarchies and Impaired Developmental Trajectories in Pediatric Ependymoma	GSE141460
2173	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epidermal cells	"KRT14, KRT15, CXCL14"	Basal keratinocytes	Tissue	Epidermis	32553276	Immunity	Excessive Polyamine Generation in Keratinocytes Promotes Self-RNA Sensing by Dendritic Cells in Psoriasis	GSE150361
2174	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Clear cells	ATP6V1G3	Clear cells	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2175	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Efferent duct cells	Elavl4	Efferent duct cells	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2176	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Principal cells	"Clu, Vim, Dkk3B"	Principal cells	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2177	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sperm	"CFAP43, FOXJ1"	Sperm	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2178	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Apical and narrow cells	"Apoeb, Cd74A"	Apical and narrow cells	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2179	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"Gnat2, Gngt2A, Gnb3B, Opn1Lw1"	Basal cells	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2180	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	FCER1G	Immune cells	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2181	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	VIM	Stromal cells	Tissue	Epididymis	32855272	Life Sci Alliance	An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR	NA
2182	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bowman gland	"SOX9, GPX3"	Bowman gland	Organoids	Epithelium	32937591	Sci Adv	Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia	GSE139522
2183	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mature osns	GNG13	Mature osns	Organoids	Epithelium	32937591	Sci Adv	Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia	GSE139522
2184	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mv ionocytes-like cells (microvillar cell)	"ASCL3, CFTR, FOXI1"	Mv ionocytes-like cells (microvillar cell)	Organoids	Epithelium	32937591	Sci Adv	Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia	GSE139522
2185	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"VIL1, CDH1, CDX2"	C2BBe1 differentiation	Cell line	Epithelium	33406999	RNA Biol	Molecular determinants and heterogeneity underlying host response to EV-A71 infection at single-cell resolution.	N/A
2186	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	CD63	Endosome-specific	Cell line	Epithelium	33406999	RNA Biol	Molecular determinants and heterogeneity underlying host response to EV-A71 infection at single-cell resolution.	N/A
2187	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"ALDH1A1, ZEB1, TCF4"	Stem-like cells	Tissue	Epithelium	31428694	Commun Biol	Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome	"GSE113197, GSE35399, and GSE18931"
2188	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"ALDH1A1, ALDH1A3, CD44, ITGA6, ZEB1, TCF4"	Stem-like cells	Tissue	Epithelium	31428694	Commun Biol	Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome	"GSE113197, GSE35399, and GSE18931"
2189	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sus cells(sustentacular cell)	"CYP2A13, CYP2J2"	Sus cells(sustentacular cell)	Organoids	Epithelium	32937591	Sci Adv	Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia	GSE139522
2190	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	FOXJ1	Ciliated cells	Cell line	Epithelium	32432922	Am J Physiol Lung Cell Mol Physiol	The FOXA1 transcriptional network coordinates key functions of primary Human airway epithelial cells	GSE143769
2191	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	NA	Epithelial cells	Tissue	Epithelium	31428694	Commun Biol	Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome	"GSE113197, GSE35399, and GSE18931"
2192	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	NA	Epithelial cells	Tissue	Epithelium	31428694	Commun Biol	Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome	"GSE113197, GSE35399, and GSE18931"
2193	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	NA	Epithelial cells	Tissue	Epithelium	31428694	Commun Biol	Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome	"GSE113197, GSE35399, and GSE18931"
2194	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	NA	Epithelial cells	Tissue	Epithelium	31428694	Commun Biol	Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome	"GSE113197, GSE35399, and GSE18931"
2195	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	NA	Epithelial cells	Tissue	Epithelium	31428694	Commun Biol	Single-cell landscape in mammary epithelium reveals bipotent-like cells associated with breast cancer risk and outcome	"GSE113197, GSE35399, and GSE18931"
2196	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT5, TP63"	Horizontal basal cells	Organoids	Epithelium	32937591	Sci Adv	Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia	GSE139522
2197	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	GNG8	Immature olfactory sensory neurons (osns)	Organoids	Epithelium	32937591	Sci Adv	Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia	GSE139522
2198	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dividing cells	MKI67	Dividing cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2199	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gland ducts	"KRT7, KRT23"	Gland ducts	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2200	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glands	"TFF3, MUC5B"	Glands	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2201	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stratified keratinocytes	KRT4	Stratified keratinocytes	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2202	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vessels	"VWF, CCL21"	Vessels	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2203	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CLEC10A"	CDC2	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2204	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMB, GNLY, PRF1"	Cytotoxic T cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2205	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	APOE	Macrophages	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2206	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, PDL1"	Macrophages	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the Human esophageal squamous cell carcinoma microenvironment	GSE145370
2207	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A, CD27, TNFRSF13B, IGHD, FCER2, TCL1A"	B cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2208	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CLEC14A"	Endothelial cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2209	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	NA	Epithelial cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2210	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	PTPRC	Immune cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2211	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSB2	Mast cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2212	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, VCAN, FCN1"	Monocytes	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2213	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCR1, NCAM1"	Natural killer (NK) cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2214	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"DCN, COL1A2, FBLN1"	Stromal cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2215	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD4, CD8A"	T cells	Tissue	Esophagus	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
2216	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3G, CD3D, CD3E, CD2"	T cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2217	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A"	B cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2218	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"KRT19, IGFBP4, CTSB"	Basal cells/fibroblasts	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2219	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"EREG, IL1B, PTGS2, IL1RN, CXCL3, FSCN1, LAMP3, CCL22, TBC1D4, IDO1, GZMB, JCHAIN, IGKC, CLlC3, LlLRA4, APOE, C1QA, C1QC, APOC1, C1QB, CLEC9A, CPVL, C1orf54, CPNE3, DNASE1L3"	Dendritic cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the Human esophageal squamous cell carcinoma microenvironment	GSE145370
2220	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSB2, CPA3"	Mast cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2221	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, VCAN, FCGR2A, CSF1R"	Monocytes/macrophages	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2222	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRC1, KLRD1"	Natural killer (NK) cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2223	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"TNFSR1B, IL1R2, CCR8"	Natural killer T (NKT) cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the Human esophageal squamous cell carcinoma microenvironment	GSE145370
2224	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, FCER1A"	MDC	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2225	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CLEC4C	PDC	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2226	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"SLAMF7, IGKC"	Plasma cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the human esophageal squamous cell carcinoma microenvironment	GSE160687
2227	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR7, TCF7, LEF1, SELL"	CD8 CD4 T cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the Human esophageal squamous cell carcinoma microenvironment	GSE145370
2228	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"IFNG, GZMB"	CD8 T cells	Tissue	Esophagus	33293583	Nat Commun	Immune suppressive landscape in the Human esophageal squamous cell carcinoma microenvironment	GSE145370
2229	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	"PLP1, MPZ, MBP"	Myelinating schwann cells	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2230	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bipolar cells	GRM6	Bipolar cells	Tissue	Eye	31995762	Cell Rep	Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration	"GSE135092, GSE135133"
2231	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cell	"RPE65, BEST1"	Retina pigment epithelium	Tissue	Eye	31995762	Cell Rep	Integration of eQTL and a Single-Cell Atlas in the Human Eye Identifies Causal Genes for Age-Related Macular Degeneration	"GSE135092, GSE135133"
2232	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C10B, MAR1, MARCO"	Macrophages	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2233	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	"MLANA, PMEL, TYRP1"	Melanocytes	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2234	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"RGR, RLPB1"	Muller cells	Tissue	Eye	31694912	Journal of Biological Chemistry	Photic generation of 11-cis-retinal in bovine retinal pigment epithelium	NA
2235	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	CRB1-A	Muller cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
2236	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"TAGLN, RGS5"	Pericytes	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2237	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT5, SFN, AOP5"	Epithelial cells	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2238	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"NKG7, KLRB1, CD3D"	Natural killer T (NKT) cells	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2239	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"ACTA2, DES, MYH11"	Smooth muscle cells	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2240	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts-like cells	DCN	Tm1 fibroblasts-like	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2241	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts-like cells	TAGLN	Tm2 myofibroblasts-like	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2242	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, ELT1, PECAM1"	Vascular endothelial cells	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2243	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, MMRN1"	Ymphatic-like endothelial cells	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2244	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	PLP1	Schwann cell-like	Tissue	Eye	32439707	Proc Natl Acad Sci U S A	Molecular taxonomy of Human ocular outflow tissues defined by single-cell transcriptomics	PRJNA616025
2245	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Photoreceptors	RCVRN	Photoreceptors	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2246	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cell	RPE65	Retina pigment epithelium	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2247	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"MLANA, MITF, DCT"	Tumor cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2248	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A, MS4A1"	B cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2249	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, C1QA, C1QB, C1QC"	Dendritic cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2250	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, VWF"	Endothelial cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2251	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	FGF7	Fibroblasts	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2252	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD68, CD163, CD14"	Monocytes/macrophages	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2253	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD68, CD163, CD14, S100A12, CLEC10A"	Monocytes	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2254	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD163, CD14, CD163, C1QA, C1QB, C1QC, IL10"	M2 macrophages	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2255	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD163, CD14, C1QA, C1QB, C1QC, lack of M2 macrophage markers"	M1 macrophages	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2256	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD163, CD14, MKI67"	Mitotic macrophages	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2257	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"FGFBP2, FCG3RA, CX3CR1"	Natural killer (NK) cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2258	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGHG1, MZB1, SDC1, CD79A"	Plasma cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2259	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD8A"	T cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2260	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, TNFRSF4, IKZF2, IL2RA"	T regulatory cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2261	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD200, GNG4, CHN1, IGFL2, ITM2A, CPM, NR3C1"	Follicular T cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2262	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	IL7R	Naive T cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2263	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8A, ZNF683"	CD8+ T effector memory cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2264	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRK1, ITGAE"	CD8+ resident memory cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2265	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"PRF1, GZMA, GZMK, NKG7, LAG3, PD1, CTLA4, TIGIT, HAVCR2, TNFRSF9"	Cytotoxic CD8+ T cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2266	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRDC, TRDG2"	CD8+ gamma delta T cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2267	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"MKI67, STMN1, HMGB2, TUBB, TUBA1B"	Mitotic CD8+ T cells	NA	Eye or Liver	31980621	Nat Commun	Single-cell analysis reveals new evolutionary complexity in uveal melanoma	GSE139829
2268	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"CD105, CD73, CD90"	Mesenchymal stem cells	Tissue	Fat	31100005	Am J Sports Med	Single-Cell Profiles and Clinically Useful Properties of Human Mesenchymal Stem Cells of Adipose and Bone Marrow Origin	NA
2269	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	LAG-3	Tumor-infiltrating lymphocytes	Tissue	Gallbladder	32839463	Nat Commun	Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate	EGAS00001003004
2270	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"TFF3, EPCAM"	Gastric adenocarcinoma cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2271	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"KRT7, KRT17, SOX4, HES1"	Gastric cancer	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2272	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cell	"MUC5AC, PGC, MUC6, TFF1, TFF2"	Gastric epithelium	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2273	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gastric mucosa	"MUC6, TFF2, TFF1, MUC5AC"	Gastric mucosa	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2274	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gastric parietal cells	GIF	Gastric parietal cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2275	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"LGR5, TROY"	Gastric stem cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2276	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intestinal cells	MUC2	Intestinal epithelium	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2277	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intestinal cells	"TFF3, FABP1, SPINK4, MUC13, REG4"	Intestinal ucosa	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2278	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesothelial cells	"KRT8, KRT18, CLDN1, TJP1, CDH2, ACTA2"	Mesothelial cells	Tissue	Gut	33277616	Exp Mol Med	Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer	GSE140182
2279	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stalk cells	"ACKR1, CD36, SELP, VWF"	Stalk cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2280	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tip cells	"COL4A1, COL4A2, DLL4, MARCKSL1"	Tip cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2281	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tissue resident effector memory T cell	"CD69, ITGAE, ITGA1"	Tissue resident effector memory T cell	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2282	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CTSW, GNLY, GZMA, GZMB, GZMH, KLRB1, KLRD1, KLRK1, PRF1, NKG7"	Cytotoxic T cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2283	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD8A, CD8B"	Cytotoxic T cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2284	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"BEX5, LGR5, MKI67, TACSTD2"	Epithelial progenitors	Organoids	Gut	33290721	Dev Cell	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn Disease	NA
2285	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"GAST, PDX1"	Antrum gastric epithelium	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2286	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroendocrine cells	"CHGA, GAST, SST"	Gastric neuroendocrine cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2287	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, CD68"	Macrophages	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2288	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD14, FCGR3A"	Macrophages	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2289	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CD68, CD86, CD163, CD80"	Macrophages	Tissue	Gut	33277616	Exp Mol Med	Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer	GSE140182
2290	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"PD-1, CTLA4, LAG3, TIGIT"	CD8 exhausted T cells	Tissue	Gut	32039830	Aging (Albany NY)	Single-cell RNA sequencing of immune cells in gastric cancer patients	NA
2291	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD83, CCR7, IL7R, ID2"	Activated dendritic cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2292	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79, CD19, MS4A1"	B cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2293	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2294	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3D, CD4, IL7R"	CD4 T cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2295	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, CD8B"	CD8 T cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2296	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"IL3RA, CLEC4C, HLA-DQA2, ID2, IRF4, CD83"	Dendritic cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2297	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC4C, ID2, IRF4, CD83"	Dendritic cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2298	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, SELE, SELP, ENG, VWF"	Endothelial cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2299	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM, ENG, VWF, SELE"	Endothelial cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2300	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"PGC, TFF1, MUC5AC, EPCAM, GIF, CHGA"	Epithelial cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2301	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, DCN, COL4A1, FAP"	Fibroblasts	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2302	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"LUM, DCN, THY1, COL1A1, COL14A1, CAV1"	Fibroblasts	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2303	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR7, SELL"	Naive or central memory T cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2304	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"MS4A2, TPSAB1, CPA3, TPSB2"	Mast cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2305	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSAB1	Mast cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2306	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, FCGR3A"	Monocytes/macrophages	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2307	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, FCGR3A, CD68"	Monocytes/macrophages	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2308	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, XCL2, NCR1, GNLY"	Natural killer (NK) cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2309	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, GNLY"	Natural killer (NK) cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2310	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	ACTA2	Myofibroblasts	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2311	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"PDGFRB, RGS5"	Pericytes	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2312	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	FABP1	Enterocytes	Tissue	Gut	32407674	Cell	High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells	GSE146799
2313	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enteroendocrine cells	CHGA	Enteroendocrine cells	Tissue	Gut	32407674	Cell	High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells	GSE146799
2314	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	MUC2	Goblet cells	Tissue	Gut	32407674	Cell	High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells	GSE146799
2315	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Paneth cells	MMP7	Paneth cells	Tissue	Gut	32407674	Cell	High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells	GSE146799
2316	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	OLFM4	Stem cells	Tissue	Gut	32407674	Cell	High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells	GSE146799
2317	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"SDC1, Immunoglobulin genes"	Plasma cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2318	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	immunoglobulin genes	Plasma cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2319	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IL3RA, CLEC4C"	Plasmacytoid dentritic cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2320	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"TRA-1-60, AP"	Stem cells	Cell line	Gut	32661348	Exp Mol Med	Cancer cells undergoing epigenetic transition show short-term resistance and are transformed into cells with medium-term resistance by drug treatment	GSE139887
2321	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA"	Regulatory T cells (Treg)	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2322	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA"	Regulatory T cells (Treg)	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2323	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G"	T cells	Tissue	Gut	32060101	Clin Cancer Res	Single-Cell Genomic Characterization Reveals the Cellular Reprogramming of the Gastric Tumor Microenvironment	dbGAP identifier phs001818.v1.p1
2324	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, CLDN1, OCLN, TJP1, DSP, KRT8, KRT18"	Epithelial cells	Tissue	Gut	33277616	Exp Mol Med	Tumor-promoting macrophages prevail in malignant ascites of advanced gastric cancer	GSE140182
2325	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, LGR5, ASCL2, EPHB2, RGMB"	Epithelial cells 1	Organoids	Gut	33290721	Dev Cell	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn Disease	NA
2326	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, SHH, PLA2G2A, BEX5, CDH2"	Epithelial cells 2	Organoids	Gut	33290721	Dev Cell	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn Disease	NA
2327	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	NA	"FOXL1 fibroblastsfoxl1, bmp3, bmp5, bmp7"	Organoids	Gut	33290721	Dev Cell	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn Disease	NA
2328	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	PLA2G2A	Mesenchymal cells	Organoids	Gut	33290721	Dev Cell	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn Disease	NA
2329	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Langerhans cells	HLA-DRA	Langerhans cells	Tissue	Hair	31676413	J Invest Dermatol	Defining transcriptional signatures of Human hair follicle cell states	GSE129611
2330	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"COL17A1, KRT5, KRT15,"	Basal cells	Tissue	Hair	31676413	J Invest Dermatol	Defining transcriptional signatures of Human hair follicle cell states	GSE129611
2331	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	ACTA2	Mesenchymal cells	Tissue	Hair	31676413	J Invest Dermatol	Defining transcriptional signatures of Human hair follicle cell states	GSE129611
2332	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	PMEL	Melanocytes	Tissue	Hair	31676413	J Invest Dermatol	Defining transcriptional signatures of Human hair follicle cell states	GSE129611
2333	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD69	T cells	Tissue	Hair	31676413	J Invest Dermatol	Defining transcriptional signatures of Human hair follicle cell states	GSE129611
2334	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cm1	"TTN, MYH7, TNNT2, TNNI3, MYL7, PLN"	Cm1	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2335	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cm2	"TTN, MYH7, TNNT2, TNNI3, MYL7, RYR2PLN"	Cm2	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2336	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cm3	"TTN, MYH7, TNNT2, TNNI3, MYL7, RYR2PLN"	Cm3	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2337	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Conduction system	HCN4	Conduction system	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2338	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Eb1	"HBB, HBM, HBG1, HBA2, HBA1, HBQ1, GYPB, GYPA, BPGM, HEMGN, UROD, HBZ"	Eb1	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2339	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Eb2	"HBB, HBM, HBG1, HBA2, HBA1, HBQ1, GYPB, GYPA, BPGM, HEMGN, UROD, HBZ"	Eb2	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2340	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ec a	"CDH5, PECAM1, IFI27, CD9"	Ec a	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2341	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ec b	"CDH5, PECAM1, FABP4, TNNT3, GNG11, COL4A1"	Ec b	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2342	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardium cells	UPK3B	Epicardium cells	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2343	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardium cells	TBX18	Epicardium and epicardium-derived cell	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2344	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardium cells	"PTN, SPON2, COL1A1, DCN, FBLN1, TCF21, LRRC17, SEPT11, CSRP2, ISLR, COL1A2, SERPINE2, PRSS23, PEG10, MFAP4, OLFML3, LOXL1, PDLIM3, LRRN3, SPARC, PDLIM2, COL6A2, RAMP1, GPC3, FRZB, CCL2, ASPN, COL6A1, OGN, SPARCL1, MFAP2, CTGF, FHL1, MMP11, COL14A1, CNTFR,"	Epicardium-derived cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2345	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardium cells	TCF21	Epicardium-derived cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2346	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Meso	"ITLN1, PRG4, KRT19,"	Meso	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2347	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm	"MESP1, MIXL1"	Mesoderm	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2348	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Modsmc	"TNFRSF11B, CYTL1, COL8A1"	Modsmc	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2349	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Modulated smc	"FN1, LUM, CNN1"	Modulated smc	Tissue	Heart	31359001	Nat Med	Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis.	GSE131778
2350	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CXCL1, CXCL3, PTX3"	Monocytic cells	Tissue	Heart	33086873	Thromb Vasc Biol	Cell-Type Transcriptome Atlas of Human Aortic Valves Reveal Cell Heterogeneity and Endothelial to Mesenchymal Transition Involved in Calcific Aortic Valve Disease	NA
2351	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"MYL2, MYL7, ACTC1, PLN, MYL4, TNNC1, FABP3, MYL3, MYOZ2, MYL9, SMPX, TPM1, TNNI1, ENO3, HSPB7, TNNT2, TNNI3, SH3BGR, CSRP3, FITM1, SLC25A4, CKM, PGAM2, BANCR, CRYAB, MDH1, CYCS, ANKRD1, DES, HSPB1, MLF1, COX6A2, HSPB3, ALDOA, CHCHD10, YBX1, PTTG1, COX5A,"	Myoz2-enriched cardiomyocytes	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2352	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"NFATC2, FYN, ZAP70"	T cell activation	Tissue	Heart	31591603	Nat Med	Single-cell immune landscape of Human atherosclerotic plaques	NA
2353	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMA, GZMK"	T cell cytotoxicity	Tissue	Heart	31591603	Nat Med	Single-cell immune landscape of Human atherosclerotic plaques	NA
2354	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"EOMES, PDCD1, LAG3"	T cell exhaustion	Tissue	Heart	31591603	Nat Med	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	NA
2355	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tc	"CD3D, LTB, IL7R"	Tc	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2356	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ventricular cardiomyocytes	"MYH7, MYL2, MYL3, SORBS2, TNNI3, TNNI1, ACTC1, TNNC1, TNNT2, SLC8A1, ANKRD1, TTN, MYL7, CSRP3, TPM1, NEBL, HSPB7, PLN, CTD-2545M3.8, FABP3, MYL4, ACTN2, SLC25A4, SMPX, MYBPC3, LDB3, MYOM1, NPPA, ENO3, SH3BGR, HSPB3, POPDC2, BANCR, PDLIM5, PPP1R12B, CRYAB,"	Ventricular cardiomyocytes	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2357	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ventricular cardiomyocytes	"RP11-532N4.fhl22,"	Ventricular cardiomyocytes	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2358	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"MYH6, NPPA, PAM, ATP2A2, MYL7, MB, TNNT2, CSRP3, TECRL, MYL4, PGAM2, CTD-2545M3.8, DES, ACTC1, EMC10, COL2A1, NEBL, TTN, RRAD, TNNC1, LDB3, MYL9, TCAP, SMPX, PPP1R1A, TNNI1, TRDN, NR2F1, CRYAB, PRKAG2, PLN, TPM1, MYBPC3, SLC8A1, SH3BGR, FITM1, FBXO32, RYR"	Atrial cardiomyocytes	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2359	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"CALD1, NPPA, PRKAG2, MYL7, PAM"	Atrial cardiomyocytes	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2360	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	NKX2-5	Cardiac cells	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2361	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	"ISL1, STMN2"	Cardiac neural crest cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2362	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	"STMN2, ALDH1A1, DLK1, LINC00682, TUBB2B, S100B, ELAVL4, PCSK1N, GAP43, MLLT11, ASCL1, PLP1, CD24, MEG3, NNAT, CADM1, NEFM, RGS4, CRABP1, SYT1, MAP1B, TUBA1A, TUBB2A, CKB, STMN4, CCND1, GAL, TLX2, MPZ, AP1S2, UCHL1, CALCB, RBMS3, ISL1, SHD, RHOB, TAGLN3, S"	Cardiac neural crest cells & schwann progenitor cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2363	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	TNNI1	Cardiac precursors	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2364	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	"CKIT, ISL1, MESP1, MESP2"	Cardiac progenitors	Cell line	Heart	32619518	Cell Stem Cell	Wnt Activation and Reduced Cell-Cell Contact Synergistically Induce Massive Expansion of Functional Human iPSC-Derived Cardiomyocytes	GSE148586
2365	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"TNNI1, MYL4"	Cardiomyocyte progenitor	Tissue	Heart	33142114	Cell Stem Cell	BMP10 Signaling Promotes the Development of Endocardial Cells from Human Pluripotent Stem Cell-Derived Cardiovascular Progenitors	GSE151186
2366	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	"TTN, MYH7"	Cardiomyocytes	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2367	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiomyocytes	TNNI3	Cardiomyocytes	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2368	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"TAL1, CDH5, PECAM1"	Endothelial cells	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2369	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MYH11, TAGLIN2"	Smooth muscle cells	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2370	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocardial cells	"NPR3, NFATC1, GATA4"	Endocardial cells	Tissue	Heart	33142114	Cell Stem Cell	BMP10 Signaling Promotes the Development of Endocardial Cells from Human Pluripotent Stem Cell-Derived Cardiovascular Progenitors	GSE151186
2371	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endoderm cells	"SOX17, FOXA2"	Endoderm cells	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2372	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"CAV1, CLDN5, GNG11, FABP4, IGFBP3, IL32, CALM1, S100A16, A2M, APLNR, ESAM, COL4A1, CDH5, C8orf4, HSPG2, PECAM1, FABP5, ICAM2, C1orf54, TCF4, PRND, CD93, EGFL7, COL15A1, TM4SF18, CD36, GMFG, PCDH17, CD34, CLEC14A, RAMP2, TMSB4X, SLC9A3R2, COL4A2, VAMP5, CC"	Endothelium/pericytes	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2373	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardial cells	WT1	Epicardial cells	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2374	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardial cells	"WT1, TBX19"	Epicardial cells	Tissue	Heart	31604922	Nat Commun	TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes	GSE135595
2375	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardial cells	"ALDH1A2, LRP2, ITLN1, TBX18"	Epicardial cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2376	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epicardial cells	"ITLN1, TNNT1, IGFBP5, CXCL14, S100A10, SBSPON, C2orf40, RARRES2, KRT19, SFRP2, KRT8, ALDH1A2, MGP, KRT18, CCDC80, SULF1, BCAM, WNT2B, SLC9A3R1, FABP5, SFRP5, TM4SF1, UPK3B, SCG5, CXADR, BCHE, EZR, LGALS3BP, PLLP, LY6H, CTGF, SPINT2, TBX18, RDH10, REC8, RS"	Epicardial cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2377	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cardiac cells	CD117	Human cardiac progenitor cell	Tissue	Heart	30629785	Stem Cells	Hypoxia Prevents Mitochondrial Dysfunction and Senescence in Human c-Kit Cardiac Progenitor Cells.	NA
2378	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Blood cells	CD45	Immature blood cells	Tissue	Heart	33149301	Nature	Paracrine signalling by cardiac calcitonin controls atrial fibrogenesis and arrhythmia	"GSE148506, GSE148507, GSE148504"
2379	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	CD45	Leukocytes	Tissue	Heart	33149301	Nature	Paracrine signalling by cardiac calcitonin controls atrial fibrogenesis and arrhythmia	"GSE148506, GSE148507, GSE148504"
2380	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD37, IGLL5"	B cells	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2381	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DCN, LUM, COL1A1, COL1A2, DLK1"	Fibroblasts 1	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2382	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DCN, LUM, COL1A1, COL1A2, DLK1"	Fibroblasts 2	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2383	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSB2, PRSS57, GATA2"	Mast cells	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2384	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A4, S100A8, S100A9, FCN1"	Monocytes	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2385	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"NKG7, GNLY, GZMA, GZMB, CCL5"	Natural killer T (NKT) cells	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2386	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"COL1A1, COL1A2, TAGLN, TAGLN, RGS5, ACTA2"	Smooth muscle cells	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2387	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"ENC1, DCN, THY1"	Fibroblasts	Tissue	Heart	31604922	Nat Commun	TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes	GSE135595
2388	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, C1QA, C1QB"	Macrophages	Tissue	Heart	31589297	Cardiovasc Res	Cell atlas of the foetal Human heart and implications for autoimmune-mediated congenital heart block.	NA
2389	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, MRC1"	Macrophages	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2390	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"RBM47, CD163, MRC1, FMN1, F13A1, RBPJ"	Macrophages	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2391	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, FCER1G, C1QA"	Macrophages	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2392	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CCL3L1, CXCL5, CCL4"	Macrophages	Tissue	Heart	33086873	Thromb Vasc Biol	Cell-Type Transcriptome Atlas of Human Aortic Valves Reveal Cell Heterogeneity and Endothelial to Mesenchymal Transition Involved in Calcific Aortic Valve Disease	NA
2393	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"EMCN, PLVAP, TMEM100, ECSCR.1, NPPC, TM4SF1, CTHRC1, RAMP2, POSTN, TFPI, ENG, PROCR, CDH11, PRCP, CD9, GJA4, SAT1, COLEC11, HLA-E, NPDC1, FXYD5, ESAM, IFITM3, QSOX1, HSPG2, LEPR, CGNL1, CLEC14A, ECE1, NPR3, TSPO, CALCRL, HYAL2, SMOC1, PECAM1, VAMP5, IL33,"	Capillary endothelial cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2394	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"MT1H, MT2A, MT1E, MT1X, MT1F, HMOX1, S100A6, HMBS, CDKN1A, BLVRB, GDF15, SLC2A1, FAM213A, SQSTM1, SLC39A8, PRDX2, GYPB, S100A4, GADD45A, FTH1, SOD1, TUBA4A, GSTO1, CITED2, SMIM5, FAM210B, CREG1, NUDT4, YPEL4, RPS27L, DDIT3, SMIM1, LINC00152, OAZ1, SLC3A2,"	Erythrocytes	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2395	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"SNCA, BPGM, FECH, SLC25A39, NCOA4, BLVRB, KRT1, BNIP3L, SELENBP1, GYPB, TMCC2, STRADB, PHOSPHO1, MPP1, MKRN1, DCAF12, EPB42, MAP2K3, UBB, ARL4A, CCNDBP1, RUNDC3A, GMPR, FAM210B, GABARAPL2, FBXO7, HAGH, TRIM58, ADIPOR1, BSG, CAT, BCL2L1, PITHD1, OAZ1, CDKN"	Erythrocytes	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2396	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts-like cells	"PENK, SLN, RSPO3, CLU, MFAP4, COL9A2, VCAN, ASPN, ID2, PDLIM3, IGF1, SRPX, HAPLN1, BAMBI, LMCD1, PCOLCE, PRRX1, SFRP1, INHBA, LGALS1, RGS5, BEX1, COL9A3, NOV, MGP, RASL11B, TAGLN, CENPW, GPC3, MEIS2, CTSK, C7, FMOD, LIMCH1, IGFBP3, CCND1, PTN, SOX4, TGFBI"	Fibroblasts-like (related to cardiac skeleton connective tissue)	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2397	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts-like cells	"ACTA2, RGS5, IGFBP7, BGN, THBS4, NDUFA4L2, THY1, APOE, COL4A1, UACA, PDGFRB, CCDC3, ITGA1, COL4A2, KCNJ8, CALD1, FOXS1, SEPT4, LHFP, CYGB, CCDC102B, SPARC, COX4I2, TPM2, MEF2C, SEPT7, TAGLN, HES4, TIMP1, COL6A3, NOTCH3, ARHGDIB, PLA2G5, SEPT11, TPM4, PLAC"	Fibroblasts-like (related to larger vascular development)	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2398	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts-like cells	"LUM, DCN, TGFBI, SERPINE2, TCF21, COL6A3, SPON2, IL32, C7, SCN7A, PCDH18, COL9A1, TIMP1, PTN, LGALS1, COL6A1, COL1A1, ECM1, CTGF, CCND1, EBF2, VIM, COL6A2, LOXL2, TRIL, PEG10, SPRY1, IGFBP7, PCOLCE, APOE, MMP2, LAMC1, GPM6B, SEPT11, COL1A2, RGS5, CCDC102B"	Fibroblasts-like (related to smaller vascular development)	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2399	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"SPP1, C1QA, C1QC, C1QB, AIF1, TYROBP, CD74, CD14, CCL3, HLA-DRA, FCER1G, FOLR2, DAB2, LAPTM5, VSIG4, RNASE1, LYVE1, MS4A6A, FCGR3A, HLA-DPA1, CD36, MS4A7, CSF1R, PLTP, LST1, S100A9, RNASET2, CCL4, CST3, VAMP8, HPGDS, F13A1, RGS1, HLA-DRB1, GPX1, A2M, BIN1"	Immune cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2400	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts-like cells	"SFRP2, OGN, CPE, ELN, SFRP1, CXCL12, CRABP2, FBLN5, SULT1E1, PRSS35, LRRC17, PLK2, JUN, CSRP2, IGFBP7, ACTA2, OSR1, AKAP12, JUNB, FLRT2, SPARCL1, RBP1, GPC3, FOS, FOSB, PLAT, GPC6, TAGLN, EFNA5, AGT, NTRK2, PFN2, ACTG2, IGF1, EDNRA, MDK, FBLN1, EGR1, TUBB"	Fibroblasts-like cells	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2401	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NRXN1, NRXN1"	Neuron-like cell	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2402	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SCN7A, XKR4, CADM2, NRXN3, NRXN1"	Neuronal cells	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2403	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, PECAM"	Endothelial cells	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2404	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL6A3, DCN"	Fibroblasts	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2405	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MYH11, CALD1"	Smooth muscle cells	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2406	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endoderm cells	EOMES	Pan-mesendoderm	Cell line	Heart	30290179	Cell Stem Cell	Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation	GSE97080
2407	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"ABCC9, KCNJ8"	Pericytes	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2408	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"NR2F2-AS1, FRMD3, PLA2G5, DLC1, EPS8"	Pericytes	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2409	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"NOTCH3, ENPEP"	Pericytes1	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2410	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"COX4I2, ENPEP"	Pericytes2	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2411	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Adipocytes	"SIK2, GHR, PDE3B, GPAM, ACACB"	Adipocytes	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2412	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PTPRB, ANO2, VWF, LDB2, EMCN, ST6GALNAC3, PITPNC1, LDB2, RP11-767I20.1"	Endothelial cells	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2413	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PID1, ABCA6, ACSM3, NEGR1"	Fibroblasts	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2414	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"SYTL3, PTPRC, SKAP1, CCND3, PARP8, ARHGAP15"	Lymphocytes	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2415	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"KCNAB1, CARMN, ITGA8, MYH11"	Vascular smooth muscle cells	Tissue	Heart	32403949	Circulation	Transcriptional and Cellular Diversity of the Human Heart	NA
2416	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"MMRN2, SOX18, VWF"	Endothelial cells	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2417	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	SMOC1	Fibroblasts 1	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2418	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CDH19, LUM, PI16, PODN, SERPINE2"	Fibroblasts 2	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2419	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"CARMN, MYH11, CNN1"	Smooth muscle cells	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
2420	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	ALDH1A1	Schwann progenitors	Organoids	Heart	31835037	Cell	A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart	EGAS00001003996
2421	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, NPR3, CDH11, HAPLN1, ADGRG6, PLVAP"	Endocardium	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2422	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, APLN"	Vascular endothelium	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2423	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, LYVE1"	Lymphatic endothelium	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2424	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	AHSP	Erythrocytes	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2425	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	DCN	Fibroblasts	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2426	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	CD14	Immune cells	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2427	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	S100B	Neural cells	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2428	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	MYH11	Smooth muscle cells	Tissue	Heart	32810435	Cell Stem Cell	Intrinsic Endocardial Defects Contribute to Hypoplastic Left Heart Syndrome	GSE138979
2429	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"SKAP1, BCL11B"	T cells	Tissue	Heart	32227090	Cardiovasc Res	The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2.	NA
2430	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"IGJ, CD7"	Lymphocytes	Tissue	Heart	33086873	Thromb Vasc Biol	Cell-Type Transcriptome Atlas of Human Aortic Valves Reveal Cell Heterogeneity and Endothelial to Mesenchymal Transition Involved in Calcific Aortic Valve Disease	NA
2431	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"SELE, IL1RL1, SER, PINE1, PI3"	Valve endothelial cells (VECs)	Tissue	Heart	33086873	Thromb Vasc Biol	Cell-Type Transcriptome Atlas of Human Aortic Valves Reveal Cell Heterogeneity and Endothelial to Mesenchymal Transition Involved in Calcific Aortic Valve Disease	NA
2432	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"LUM, SOX4, CCL20, MT1A, RPL17, CMSS1"	Valve-derived stromal cells (vdsc)	Tissue	Heart	33086873	Thromb Vasc Biol	Cell-Type Transcriptome Atlas of Human Aortic Valves Reveal Cell Heterogeneity and Endothelial to Mesenchymal Transition Involved in Calcific Aortic Valve Disease	NA
2433	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"SOX9, MSX2, POSTN, CDH11, VIM, COL1A1, COL3A1, NR4A2, PRRX2, TIMP3"	Valvular interstitial cells	Tissue	Heart	33142114	Cell Stem Cell	BMP10 Signaling Promotes the Development of Endocardial Cells from Human Pluripotent Stem Cell-Derived Cardiovascular Progenitors	GSE151186
2434	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CD45	Endothelial cells	Tissue	Heart	33149301	Nature	Paracrine signalling by cardiac calcitonin controls atrial fibrogenesis and arrhythmia	"GSE148506, GSE148507, GSE148504"
2435	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"FOS, HSPA6, COL1A1, COL3A1, SPARC"	Valve interstitial cells (vics)	Tissue	Heart	33086873	Thromb Vasc Biol	Cell-Type Transcriptome Atlas of Human Aortic Valves Reveal Cell Heterogeneity and Endothelial to Mesenchymal Transition Involved in Calcific Aortic Valve Disease	NA
2436	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	GZMK	Cytotoxic T cells	Cell line	Human immune cells	31471617	Nature Methods	Data denoising with transfer learning in single-cell transcriptomics	GSE114725
2437	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	GZMK	Cytotoxic T cells	Cell line	Human immune cells	31471617	Nature Methods	Data denoising with transfer learning in single-cell transcriptomics	GSE114725
2438	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"LEF1, TCF7, SATB1, SELL"	CD4 naive T cells	Cell line	Human immune cells	31471617	Nature Methods	Data denoising with transfer learning in single-cell transcriptomics	GSE114725
2439	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"LEF1, TCF7, SATB1, SELL"	CD4 naive T cells	Cell line	Human immune cells	31471617	Nature Methods	Data denoising with transfer learning in single-cell transcriptomics	GSE114725
2440	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA, DUSP4, RGS1, IL2RB"	Naive cytotoxic T cells	Cell line	Human immune cells	31471617	Nature Methods	Data denoising with transfer learning in single-cell transcriptomics	GSE114725
2441	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA, DUSP4, RGS1, IL2RB"	Naive cytotoxic T cells	Cell line	Human immune cells	31471617	Nature Methods	Data denoising with transfer learning in single-cell transcriptomics	GSE114725
2442	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, GAD2"	Interneurons	Cell line	Interneurons	32999462	Nature	Innovations present in the primate interneuron repertoire	NA
2443	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune_cycling	"PTPRC, MKI67, CENPF, TOP2A"	Immune Cell cycle	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2444	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inner muscularis	"MYH11, ACTG2, TAGLN, FOXF2, ACTC1, IGFBP2, HOXC8, IGFBP7"	Proximal IM	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2445	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inner muscularis	"MYH11, ACTG2, TAGLN, FOXF2, ACTC1, PNCK, MORN5, AHK2"	Distal IM	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2446	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inner muscularis	"MYH11, ACTG2, TAGLN, FOXF2, ACTC1, PLCG2, NPNT, IGF1"	Proximal MM	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2447	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inner muscularis	"MYH11, ACTG2, TAGLN, FOXF2, ACTC1, PLN, MOXD1, TMEM158"	Distal MM	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2448	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inner muscularis	"MYH11, ACTG2, TAGLN, FOXF2, ACTC1, PMAIP1, HMGCS1, KRT17"	IM PMAIP1+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2449	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchyme	"COL1A1, COL1A2, DCN, ACTA2, TAGLN, MYLK"	Mesenchyme	Tissue	Intestine	33278341	Cell Stem Cell	Mapping Development of the Human Intestinal Niche at Single-Cell Resolution	"E-MTAB-9489, E-MTAB-9720"
2450	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Outer muscularis	"MYH11, ACTG2, TAGLN, FOXF2, BCHE, CAPN3, IGFBP5"	OM	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2451	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"CLEC4G, MLN, GHRL"	A-Cells/M-Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2452	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"SST, HHEX, PCP4"	D-Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2453	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"TPH1, RXFP4, CHGA"	Enterochromaffin Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2454	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"CCK, GC, TDO2"	I-Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2455	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"PYY, GCG, UCN3"	L-Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2456	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"NTS, HOPX, MEP1A"	N-Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2457	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"MUC2, TFF3, UBE2C, PBK, MKI67"	Goblet 1	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2458	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"MUC2, TFF3, TRABD2A, PTGDR, MYC"	Goblet 2	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2459	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"MUC2, TFF3, SPDEF, WFDC2, ATOH1"	Goblet 3	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2460	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"PRSS2, DEFA5, DEFA6"	Paneth	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2461	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"PHOX2B, HAND2, TUBB2B, MKI67, CENPF, TOP2A"	Neural G2M & S-Phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2462	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"MYH11, ACTG2, TAGLN, MKI67, CENPF, TOP2A"	Muscularis G2M phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2463	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"MYH11, ACTG2, TAGLN, PCLAF, TYMS, GINS2"	Muscularis S-phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2464	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD4	CD4 T cells	Tissue	Intestine	30664737	Nature Immunology	"Single-cell transcriptome provides novel insights into antler stem cells, a cell type capable of mammalian organ regeneration."	NA
2465	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"PTPRC, TPSAB1, CPA3, MS4A2"	Mast cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2466	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D, FGG, SOX11, FGB"	Proximal Progenitors	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2467	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D, TF, AFP, VTN"	Proximal Early Enterocytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2468	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D, CCL25, HEBP1, OSR2"	Proximal Enterocytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2469	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D, APOC3, ACE, FABP2"	Proximal Mature Enterocytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2470	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D, CA12, HMGCS2, SLC13A2"	Distal Absorptive	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2471	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D, SLC26A2, FABP1, CKB"	Distal Enterocytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2472	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D, AQP8, FABP6, IL32"	Distal Mature Enterocytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2473	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FABP2, APOE, FAM3D,BEST4, OTOP2, CA7"	BEST4/OTOP2 cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2474	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FOXA2, INSM1, HES6, SL1, NEUROG3, GHRL"	Secretory Progenitors	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2475	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FOXA2, INSM1, HES6, CHGA, TPH1, NEUROD1"	EECs	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2476	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, FOXA2, INSM1, HES6, MUC2, SPINK4, WFDC2"	Goblet cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2477	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, LGR5, ASCL2, MYC, CASP1, GRIA4, PLA2G2A"	Proximal Stem Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2478	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, LGR5, ASCL2, MYC, LEFTY1, PTGDR, SMOC2"	Distal Stem Cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2479	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, MKI67, TOP2A, UBE2C, CENPM, TK1, UBE2T"	Proximal TA	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2480	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, FABP1, MKI67, TOP2A, UBE2C, HMGB3, MND1, TACC3"	Distal TA	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2481	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"MYH11, ACTG2, TAGLN, HOXC5, PLPP2, MYOCD"	Inner muscularis progenitors	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2482	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"MYH11, ACTG2, TAGLN, KIT, ANO1, ETV1, SPON2"	Interstitial Cells of Cajal / ICCs	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2483	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"MYH11, ACTG2, TAGLN, KIT, PDGFRA, ITGA8, BMP4"	PDGFRA+ cells	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2484	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"PTPRC, MERTK, CTSC, CTSD, CD14, FGL2, HES1, SLC40A1"	Macrophage	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2485	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"PTPRC, MERTK, CTSC, CTSD, CD14, SPP1, RSE1, FOLR2"	Macrophage SPP1+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2486	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	"ALPI, SLC26A3, TMEM37, FABP2"	Enterocytes	Tissue	Intestine	31753849	Journal of Experimental Medicine	Single-cell transcriptome analysis reveals differential nutrient absorption functions in Human intestine.	GSE125970
2487	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enteroendocrine cells	"CHGA, CHGB, CPE, NEUROD1, PYY"	Enteroendocrine cells	Tissue	Intestine	31753849	Journal of Experimental Medicine	Single-cell transcriptome analysis reveals differential nutrient absorption functions in Human intestine.	GSE125970
2488	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"ZG16, CLCA1, FFAR4, TFF3, SPINK4, ITLN1"	Goblet cells	Tissue	Intestine	31753849	Journal of Experimental Medicine	Single-cell transcriptome analysis reveals differential nutrient absorption functions in Human intestine.	GSE125970
2489	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Paneth cells	"LYZ, CA7, SPIB, CA4, FKBP1A"	Paneth cells	Tissue	Intestine	31753849	Journal of Experimental Medicine	Single-cell transcriptome analysis reveals differential nutrient absorption functions in Human intestine.	GSE125970
2490	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"LGR5, RGMB, SMOC2, ASCL2"	Stem cells	Tissue	Intestine	31753849	Journal of Experimental Medicine	Single-cell transcriptome analysis reveals differential nutrient absorption functions in Human intestine.	GSE125970
2491	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amplifying cells	"KI67, PCNA, TOP2A, CCNA2, MCM5, NUSAP1"	Transit amplifying cells	Tissue	Intestine	31753849	Journal of Experimental Medicine	Single-cell transcriptome analysis reveals differential nutrient absorption functions in Human intestine.	GSE125970
2492	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"PHOX2B, HAND2, TUBB2B, S100B, SOX10, PLP1, FGL2, GFRA3, RXRG"	Lymphoid associated glial	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2493	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"PHOX2B, HAND2, TUBB2B, S100B, SOX10, PLP1, ENTPD2, SPRY1, SOX6"	Intraganglionic glial	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2494	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"PHOX2B, HAND2, TUBB2B, S100B, SOX10, PLP1, CEBPD, SOCS3, ZFP36"	Submucosal glia	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2495	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"PHOX2B, HAND2, TUBB2B, S100B, SOX10, PLP1, BCAN, APOE, LAMP5"	Differentiating submucosal glial	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2496	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"PHOX2B, HAND2, TUBB2B, S100B, SOX10, PLP1, PHOX2B, HMGA2, CTGF"	Glial progenitors	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2497	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PHOX2B, HAND2, TUBB2B, ELAVL4, CHRNA3, GAP43, DLL3, DLL1"	ENS progenitors	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2498	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PHOX2B, HAND2, TUBB2B, ELAVL4, CHRNA3, GAP43, NEUROD6, SCGN, SSTR2, NPY2R"	Neuroendocrine 1	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2499	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PHOX2B, HAND2, TUBB2B, ELAVL4, CHRNA3, GAP43, DGKG, SST, KCTD16"	Neuroendocrine 2	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2500	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PHOX2B, HAND2, TUBB2B, ELAVL4, CHRNA3, GAP43, CASZ1, RAMP1, GFRA2"	Excitory motor neuron	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2501	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PHOX2B, HAND2, TUBB2B, ELAVL4, CHRNA3, GAP43, SCGN, CRABP1, NOS1, VIP, ADCYAP1"	Inhibitory motor neuron precursor	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2502	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PHOX2B, HAND2, TUBB2B, ELAVL4, CHRNA3, GAP43, NOS1, VIP, HTR2B, ETV1"	Inhibitory motor neuron	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2503	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PHOX2B, HAND2, TUBB2B, ELAVL4, CHRNA3, GAP43, PENK, ACHE, TAC1, ONECUT2"	Interneuron	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2504	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, MKI67, CENPF, TOP2A"	Pericyte G2M-phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2505	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, PCLAF, TYMS, GINS2"	Pericyte S-phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2506	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, THBS1, MBP, CEBPD"	Pericyte progenitors	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2507	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, CYGB, NFKBIA, TESC"	Undifferentiated pericytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2508	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, WNT6, GPAT2, THBS1"	WNT6+ pericytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2509	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, PROCR, EBF2, THBS4"	Angiogenic pericyte	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2510	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, BMPER, CYGB, SPON2"	BMPER+ pericytes	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2511	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"KCNJ8, ABCC9, RGS5, CSP4G, ADIRF, MYH11, ACTA2"	Contractile pericyte	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2512	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"SOX9, CDK6, MUC4, FABP5, PLA2G2A, LCN2"	Progenitor cells	Tissue	Intestine	31753849	Journal of Experimental Medicine	Single-cell transcriptome analysis reveals differential nutrient absorption functions in Human intestine.	GSE125970
2513	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"NEUROG3, CLPS, MDK"	NEUROG3+ Progenito	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2514	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, KDR, ECSSR, CLDN5"	Endothelial cells	Tissue	Intestine	33278341	Cell Stem Cell	Mapping Development of the Human Intestinal Niche at Single-Cell Resolution	"E-MTAB-9489, E-MTAB-9720"
2515	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, CDH1, CDX2, CLDN4"	Epithelial cells	Tissue	Intestine	33278341	Cell Stem Cell	Mapping Development of the Human Intestinal Niche at Single-Cell Resolution	"E-MTAB-9489, E-MTAB-9720"
2516	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"PTPRC, HLA-DRA, ARHGDIB, CORO1A"	Immune cells	Tissue	Intestine	33278341	Cell Stem Cell	Mapping Development of the Human Intestinal Niche at Single-Cell Resolution	"E-MTAB-9489, E-MTAB-9720"
2517	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"S100B, PLP1, STMN2, ELAVL4"	Neurons	Tissue	Intestine	33278341	Cell Stem Cell	Mapping Development of the Human Intestinal Niche at Single-Cell Resolution	"E-MTAB-9489, E-MTAB-9720"
2518	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, GJA4, IGFBP3, UNC5B, HEY1, GJA5, ITGB4"	Arterial (L)	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2519	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, GJA4, IGFBP3, UNC5B, UNC5B, DLL4, PRND"	Arterial (M)	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2520	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, GJA4, IGFBP3, UNC5B, VWA1, AFG1L, EDNRB"	Arterial (CP)	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2521	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, GJA4, IGFBP3, UNC5B, CHST1, LGALS1, IGFBP3"	Arterial (CP)	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2522	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, MKI67, CENPF, TOP2A"	Endothelium G2M-phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2523	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, PCLAF, TYMS, GINS2"	Endothelium S-phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2524	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"PTPRC, ETV6, FLT3, IL3RA, LILRA4, PTCRA"	PDCs	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2525	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"PTPRC, ETV6, FLT3, CD207, BATF3, CD1D"	DCs	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2526	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, ADAMDEC1, FABP5, CTSC, PDLIM3, COL28A1, TFPI2"	S1	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2527	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, ADAMDEC1, FABP5, CTSC, COL6A5, LXN, WNT4"	S1 COL6A5+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2528	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, ADAMDEC1, FABP5, CTSC, IFIT3, CLEC2B, GPX3"	S1 IFIT3	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2529	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, FRZB, SOX6, F3, NPY, CXCL10, BMP2"	Proximal S2 1	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2530	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, FRZB, SOX6, F3, MMP11, INSC, BMP3"	Proximal S2 2	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2531	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, FRZB, SOX6, F3, POSTN, ALKAL2, WNT5B"	Distal S2	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2532	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, C7, ASPN, OGN, OSR2, NR2F1"	S3 progenitor	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2533	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, C7, ASPN, OGN, GREM1, GDF10, FBLN1"	S3 Transitional	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2534	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, C7, ASPN, OGN, RAMP1, SCN7A, SCUBE2"	S3	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2535	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, C7, ASPN, OGN, PRRX1, EBF3, EBF2"	S3 EBF+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2536	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, C7, ASPN, OGN, COL9A3, DLK1, HAND1"	S3 HAND1+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2537	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, CCL19, C3, CD74, CXCL13, TNFSF11, CD24"	S4 CXL13+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2538	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, CCL19, C3, CD74, CCL21, OLFM3, PTGDS"	S4 CCL21+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2539	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, CENPF, TOP2A, MKI67"	Fibroblast G2M phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2540	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, PCLAF, TYMS, GINS2"	Fibroblast S-Phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2541	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"THY1, COL1A2, VIM, HMGA2, MBP"	Fibroblast progenitor	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2542	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"PTPRC, CD19, EBF1, PAX5, IGLL1, VPREB1, RAG1"	Pre B Cell	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2543	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"PTPRC, CD19, EBF1, PAX5, BANK1, CD79B, IGHD"	B cell	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2544	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"PTPRC, ETS1, TOX, CD3D, CD3G, CD27"	Na_ve T Cell	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2545	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"PTPRC, ETS1, TOX, CD8A, IL2RB, TRDC"	NKs and gammadelta	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2546	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"PTPRC, ETS1, TOX, IL7R, ID2, RORC, KRT86"	Type 3 ILCs	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2547	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, LYVE1, PROX1, RELN"	Lymphatic	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2548	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"PTPRC, CD14, FCN1, S100A8, CLEC12A"	Monocyte	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2549	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"VIM, FOXF1, TAGLN, RSPO2, MKI67, CENPF, TOP2A"	Myofibroblast G2M phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2550	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"VIM, FOXF1, TAGLN, RSPO2, PCLAF, TYMS, GINS2"	Myofibroblast S-phase	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2551	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"VIM, FOXF1, TAGLN, RSPO2, THY1, NKX2-3, ACTG2, ADAMDEC1, MFAP4, ADAM28"	Myofibroblast progenitors	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2552	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"VIM, FOXF1, TAGLN, RSPO2, THY1, NKX2-3, ACTG2, ACTA2, MYH11, GREM2"	Myofibroblasts	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2553	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"VIM, FOXF1, TAGLN, RSPO2, MSLN, WT1, RSPO1, IL18, GATA6, WNT10A"	Mesothelium IL18+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2554	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"VIM, FOXF1, TAGLN, RSPO2, MSLN, WT1, RSPO1, SOX6, HPGD, STX2"	Mesothelium SOX6+	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2555	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, MADCAM1, APLNR, PRCP, ACKR1, VWF, ADGRG6"	Venous (L)	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2556	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, MADCAM1, APLNR, PRCP, LRG1, PLVAP"	Venous (M) 1	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2557	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, MADCAM1, APLNR, PRCP, CALCRL, APLNR, PRCP"	Venous (M) 2	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2558	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, MADCAM1, APLNR, PRCP, CCL2, CD69, RGCC"	Venous (CP) 1	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2559	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, CLDN5, MADCAM1, APLNR, PRCP, LDHB"	Venous (CP) 2	Tissue	Intestine	33406409	Cell	Spatiotemporal analysis of Human intestinal development at single-cell resolution.	"GSE158702, GSE158328"
2560	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"CDKN1A, CDKN1C"	Beta cells	Tissue	Islets	30010845	Endocrinology	Gene Signature of Proliferating Human Pancreatic alpha Cells	GSE114297
2561	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"IGF2, MEG3, GLRA1"	Beta cells	Tissue	Islets	30760930	Nature	Diabetes relief in Mouse by glucose-sensing insulin-secreting Human alpha-cells	GSE118257
2562	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	NA	Endocrine cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2563	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	GHSR	Endocrine cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2564	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"SSTR1, SSTR2"	Epsilon cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2565	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"SPINK1, serpin family A member 1"	Epsilon cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2566	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	ACSL1	Epsilon cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2567	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	beta-defensin protein	Epsilon cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2568	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"RBP4, TTR, RBP4"	Epsilon cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2569	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"TM4SF4, transmembrane 4 L six family member 5"	Epsilon cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2570	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	HES4	Epsilon cells	Tissue	Islets	30380031	Endocrinology	Gene Signature of the Human Pancreatic e Cell	GSE114297
2571	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	"INS, GCG, TTR, SST, PPY, IAPP, REG1A"	Islet cells	Tissue	Islets	32375897	Gnome Biol	Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets.	"GSE147203, GSE147202"
2572	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	REG1A	Islet acinar-like cell	Tissue	Islets	32375897	Gnome Biol	Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets.	"GSE147203, GSE147202"
2573	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	"SCG2, CPE, ITM2B, PDIA3, PRDX4, EPCAM, CFC1, IGFBP7, XBP1, SMOC1, C19orf10, TUSC3, HMGB3, HSPB1, SERPINE2, ATP6AP2, HSPA5, CD164, SDF2L1, PLCE1, TUBA1A, PDK4, ASPH, VGF, LAPTM4B, SERPI1,"	Alpha sub1	Tissue	Islets	30010845	Endocrinology	Gene Signature of Proliferating Human Pancreatic alpha Cells	GSE114297
2574	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	"SST, IAPP, INS, RBP4, RPL9,"	Alpha sub2	Tissue	Islets	30010845	Endocrinology	Gene Signature of Proliferating Human Pancreatic alpha Cells	GSE114297
2575	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	"CDK1, MKI67, RRM2, TOP2A"	Alpha sub3	Tissue	Islets	30010845	Endocrinology	Gene Signature of Proliferating Human Pancreatic alpha Cells	GSE114297
2576	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	"GCG, TTR"	Islet alpha cells	Tissue	Islets	32375897	Gnome Biol	Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets.	"GSE147203, GSE147202"
2577	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	"INS, MAFA, PSCK1, ADCYAP1, PFKFB2, RBP1, SIX3"	Islet beta cells	Tissue	Islets	30760930	Nature	Diabetes relief in Mouse by glucose-sensing insulin-secreting Human alpha-cells	GSE118257
2578	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	INS	Islet beta cells	Tissue	Islets	32375897	Gnome Biol	Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets.	"GSE147203, GSE147202"
2579	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	SST	Islet delta cells	Tissue	Islets	32375897	Gnome Biol	Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets.	"GSE147203, GSE147202"
2580	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	PPY	Islet gamma cells	Tissue	Islets	32375897	Gnome Biol	Single-cell RNA-seq with spike-in cells enables accurate quantification of cell-specific drug effects in pancreatic islets.	"GSE147203, GSE147202"
2581	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Capmesenchyme	"SIX2, CITED1, PAX2, SIX1"	Capmesenchyme	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2582	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cerebellar purkinje cells	PCP4	Cerebellar purkinje cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2583	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Clear cell renal cell carcinoma	"CA9, NDUFA4L2"	Clear cell renal cell carcinoma	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2584	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Clear cell renal cell carcinoma	CAIX	Clear cell renal cell carcinoma	Tissue	Kidney	32586940	Clin Cancer Res	Macrophage HIF-1alpha is an independent prognostic indicator in kidney cancer	NA
2585	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cnt	"SLC8A1, CALB1"	Cnt	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2586	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"PHOX2B, SYP"	Common nb tumor cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2587	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dct	"UMOD, CALB1"	Dct	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2588	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Developing vasculature	"PLVAP, GNG11, TIE1"	Developing vasculature	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2589	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal cells	"CDH1, AQP2, LTL, DBA"	Distal cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2590	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule	"AVPR2, SLC8A1, KCNJ1"	Distal tubule	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2591	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	CLDN8	Collecting duct cells	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2592	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	"GFRA1, CD31, GATA3"	Distal tubule cells	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2593	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	UMOD	Distal tubule cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2594	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	NA	Distal tubule cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2595	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	"DEFB1, UMOD"	Distal tubule cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2596	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	UMOD	Distal tubule cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2597	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	"SLC12A1, POU3F3, IRX1"	Distal tubule & loop of henle	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2598	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dtl	"VCAM1, MMP7"	Dtl	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2599	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Early hemangioblast	"FOXC2, ETV2, SIX1"	Early hemangioblast	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2600	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Early podocytes	"PAX8, PCDH9, OLFM3"	Early podocytes	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2601	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Early proximal tubule	"LRP2, ANPEP, SLC34A1, CLDN1, CLDN2, SLC13A1, CUBN"	Early proximal tubule	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114538
2602	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Early renal vesicle	"PAX2, PAX8, LHX1, JAG1"	Early renal vesicle	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2603	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ec-aea	"SERPIME2, CD34"	Ec-aea	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2604	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ec-pt	"PLVAP, CD34"	Ec-pt	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2605	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"FOXD1, PBX1, PDGFRA"	Stromal progenitor	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107649"
2606	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL3A1, COL1A2, COL1A1"	Fibroblast	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107650"
2607	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gc-ec	"EHD3, CD34"	Gc-ec	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2608	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glom_vascular	"CLDN5, AQP1, SEMA3G"	Glom_vascular	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2609	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glomerulus	"PTPRO, WT1, PODXL"	Glomerulus	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2610	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Henle_ascending	CLDN16	Henle_ascending	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2611	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Henle_descending	SLC12A1	Henle_descending	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2612	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ic-a	"ATP6V0D2, SLC26A7"	Ic-a	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2613	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ic-b	"SLC4A9, ATP6V0D2"	Ic-b	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2614	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intermediate mesoderm	"PAX2, WT1, LHX1, OSR1, SIX1, EYA1"	Intermediate mesoderm	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2615	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstial cells	"COL1A2, PDGFRA, COL1A1"	Interstial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2616	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Juxtaglomerular cells	"REN, MEF2C, MYH11"	Juxtaglomerular cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2617	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ligands	VEGFA	Ligands	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2618	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Maturing podocytes	OLFM3	Maturing podocytes	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2619	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Medial-distal cells	"SOX9, HNF1B, HES1, LEF1, CDH16"	Medial-distal cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2620	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanoblasts	"MITF, DCT, PMEL"	Melanoblasts	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2621	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesangial cells	"ACTA2, TPM2, PDGFRB, MCAM, CSPG4, CD248"	Mesangial cells	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114542
2622	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesangial cells	"TMEFF1, GATA3, COL4A1"	Mesangial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2623	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm	"ACTA2, MSX1"	Mesoderm	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2624	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myl1	S100A8	Myl1	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2625	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myl2	HLA-DQB1	Myl2	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2626	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myogenic fate	"MYF5, MYF6"	Myogenic fate	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2627	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"TMEM100, WASF3, MEOX2"	NPCs	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112571
2628	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"HEY1, LYPD1"	NPCs primed for differentiation	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112571
2629	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"HES1, LHX1, PAX8"	Induced/differentiating cells	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112572
2630	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"MAFB, PTPRO"	Podocyte precursors and podocytes	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112573
2631	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"CDH6, JAG1"	Proximal precursors	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112574
2632	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"MAL, SOX9"	Distal precursors	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112575
2633	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	SLC12A1	Maturing cell types of the loop of Henle	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112576
2634	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	SLC3A1	Proximal tubules	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112577
2635	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubules	"ALDH1A1, GATA3"	Distal tubules	Tissue	Kidney	29870722	Dev Cell	Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis	GSE112578
2636	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephrogenic intermediate mesoderm	"WT1, HOXD11"	Nephrogenic intermediate mesoderm	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2637	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural tube cells	"SOX2, HES5"	Neural tube cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2638	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"CITED1, SIX1, LYPD1, DAPL1"	Npcs	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2639	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"CITED1, SIX1, LYPD1, DAPL1, TMEM100, CITED1, MEOX1, ROBO2"	Self-renewing NPCs	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2640	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"CITED1, SIX1, LYPD1, DAPL1, ID1, MEG3, DAPL1"	Primed NPCs	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2641	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"CITED1, SIX1, LYPD1, DAPL1, CCND1, PAX8, LHX1, PODXL, MAFB, NPHS2"	Differeniating NPCs	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2642	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"CITED1, SIX1, LYPD1, DAPL1, CENPF, TOP2A"	Proliferating NPCs	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2643	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	MET	Papillary renal cell carcinoma	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2644	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pc	"FXYD4, STC1"	Pc	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2645	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pc-cnt	"CALB1, FXYD4, STC1, SLC8A1"	Pc-cnt	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2646	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pec	"CTGF, CRB2, VCAM1, SLC4A11, CLDN1"	Pec	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2647	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pelvic	"KRT23, SAA2"	Pelvic	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2648	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pelvic_ureter	"TP63, S100P, PVRL4, KRT5, UPK1A, UPK1B, DHRS2"	Pelvic_ureter	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2649	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pluripotency cells	"OCT4, NANOG"	Pluripotency cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2650	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pretubular aggregate	"LHX1, WNT4, CCND1"	Pretubular aggregate	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114531
2651	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pretubular aggregate	"LHX1, PAX8"	Pretubular aggregate	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2652	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Primitive streak	"T, MIXL1"	Primitive streak	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2653	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Principal cells	AQP2	Principal cells	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2654	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proimal tubule	DCXR	Proimal tubule	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2655	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proimal tubule	NA	Proimal tubule	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2656	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"HIST1H4C, CENPF, TOP2A, HMGB2, UBE2S, BIRC5, CDC20, CCNB1, SIX1, TOP2A, UBE2C, ITGA8, CENPX, NUSAP1, RPL21, RPL35, COL2A1"	Proliferating cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2657	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"ASPM, MKI67, TOP2A, HMGB2, AURKB"	Proliferating cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2658	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"PCNA, LHX1, PAX2"	Proliferative committed np	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2659	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intersititial cells	"TOP2A, COL1A2, PCNA"	Proliferative intersititial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2660	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal cells	"SLC13A3, SLC34A1, SLC17A3, SLC22A8, SLC7A13, SLC16A9, SLC22A7"	Proximal	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2661	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal cells	"PODXL, MAFB, DLL1, NPHS1, TCF21, CDH6, LRP2, LTL, AQP1"	Proximal cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2662	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Renal vesicle	"PAX8, JAG1, WT1, LMN1"	Renal vesicle	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2663	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Renal vesicle & comma-shaped body	"LHX1, PAX8, JAG1, PAX2, WNT4, SFRP2, DLL1"	Renal vesicle & comma-shaped body	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114532
2664	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	"S-shaped body, medial and distal segments"	"HNF1B, POU3F3, SIM2, SOX9, IRX2, IRX3"	"S-shaped body, medial and distal segments"	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114533
2665	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	"S-shaped body, proximal segment"	"CDH6, HNF1A, AMN"	"S-shaped body, proximal segment"	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114534
2666	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	"S-shaped body, proximal segment (podocyte precursor cells)"	"FOXC2, MAFB, OLFM3, WT1"	"S-shaped body, proximal segment (podocyte precursor cells)"	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114535
2667	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sympathoadrenal cells	"PHOX2B, ISL1"	Sympathoadrenal cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2668	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sympathoblasts	"CARTPT, INSM1"	Sympathoblasts	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2669	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sympathoblasts	CARTPT	Sympathoblasts	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2670	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sympathoblasts	"TH, CHGB"	Sympathoblasts	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2671	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tal	UMOD	Tal	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2672	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T-cyt	NKG7	T-cyt	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2673	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T-cyt-mem	"KLRB1, IL7R"	T-cyt-mem	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2674	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Thick ascending limb	SLC12A1	Thick ascending limb	Organoids	Kidney	31784515	Nat Commun	Single cell census of Human kidney organoids shows reproducibility and diminished off-target cells after transplantation	GSE136314
2675	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tpc-ic	"ATP6V0D2, GALB1"	Tpc-ic	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2676	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"CYSLTR2, PAH, C1orf21, GSTA1, RAMP1, KLK11"	Tumor cells1	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2677	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"TRIB3, UGCG, CXCL5, MUC12, ADAMTS1, TUBB2B"	Tumor cells2	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2678	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"SAA1, C12orf75, RPS21, ZFAS1, RPLP0, NACA"	Tumor cells3	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2679	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"TAP1, GBP1, PKHD1, c21orf62, IEIT3, WARS"	Tumor cells4	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2680	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ureteric tip	WNT11	Ureteric tip	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2681	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ureteric tip	"ALDH1A1, RET, CRABP1"	Ureteric tip	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2682	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Uretericbud	"HNF1B, CDH16, TFCP2L1, POU3F3, ELF3, GATA3, RET"	Uretericbud	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2683	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Venous cells	"NRP2, NR2F2, EPHB4"	Venous cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2684	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Arterial cells	"CXCR4, DEPP1, UNC58, EFNB2, NOTCH4, DLL4, ACVRL1"	Arterial cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2685	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Limb cells	MMP7	Limb cells	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2686	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cancer stem cells	"MKI67, TOP2A, CENPF, CDK1, UBE2C, KIAA0101"	Cancer stem cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2687	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SFRP2, EMILIN1, MMP2"	Fibroblasts	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2688	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"PDGFRB, ACTA2"	Myofibroblasts	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2689	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"HIST1H4C, PCLAF, TYMS"	Cell cycling cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2690	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"CENPF, HMGB2, UBE2C"	Cell cycling cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2691	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"CCNB1, CCNB2, CENPE, CENPF"	Cell cycling cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2692	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Chromaffin cells	PHOX2B	Chromaffin cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2693	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Chromaffin cells	"PRPH, NPY, NTRK1"	Non-cycling chromaffin cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2694	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Chromaffin cells	"TH, CHGB"	Chromaffin cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2695	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"ATP6V0D2, CLCNKB, SLC26A4, SLC4A1"	Collecting duct cells	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2696	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"GATA3, GFRA1"	Collecting duct	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2697	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"GATA3, TMEM213"	Collecting duct	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2698	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"KRT18, AQP2, CALB1"	Collecting duct	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2699	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	Collecting duct	Collecting duct	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2700	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"AQP2, TMEM213, ATP6V1G3, ATP6V0D2,"	Collecting duct	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2701	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	AQP2	Collecting duct	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2702	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"GATA3, AQP2"	Collecting duct	Organoids	Kidney	33326782	Cell Rep	Human Pluripotent Stem Cell-Derived Kidney Organoids with Improved Collecting Duct Maturation and Injury Modeling	GSE131086
2703	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"KRT18, KRT8, RET, CLDN7, AQP2, GATA2, MMP7, CALB1"	Collecting duct & ureteric bud	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114543
2704	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	"ATP6V1G3, ATP6V0D2, TMEM213"	Collecting duct intercalated cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2705	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	AQP2	Collecting duct principal cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2706	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"LYPD1, LHX1, JAG1"	Committed & early nephron	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2707	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"PAX2, PAX8, JAG1, LYD1, DAPL1"	Committed nephron progenitors	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2708	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"IRX1, IRX2"	Distal nephronMedial and distal SSB	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107635"
2709	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	HNF1B	Distal nephro Medial and distal SSB Ureteric bud	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107636"
2710	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"GATA3, RET, WNT9B, SOX8, SOX9, GFRA1, WNT11, ELF3, TCFP2L1, CDH16"	Ureteric bud	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107637"
2711	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	POU3F3	"Ureteric bud, distal SSB"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107638"
2712	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"KRT8, KRT19"	Proximal UB/collectingduct	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107639"
2713	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"SIX2, ITGA8, CITED1, SALL1, OSR1, WNT4, BMP7, HOXA11"	Cap mesenchyme	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107640"
2714	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	MAFB	"Cap mesenchyme, proximal RV, proximalSSB, podocyte"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107641"
2715	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	WT1	"Cap mesenchyme, pododcyte, proximal RV, proximal SSB"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107642"
2716	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	PAX2	"Cap mesenchyme, proximal RV"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107643"
2717	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"FOXC2, LMX1B, NPHS1, NPHS2"	"Proximal RV, proximal SSB"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107644"
2718	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"PAX8, TMEM100"	Proximal RV	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107645"
2719	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"JAG1, NOTCH2"	"Proximal RV, Medial SSB"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107646"
2720	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"LHX1, DLL1, DKK1, FGF8"	Distal RV	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107647"
2721	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	CCND1	Distal SSB	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107648"
2722	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"MAL, ALDH1A1, KRT18, GATA3, CDH6, EMX2, LRP2"	Differentiating nephron cell-type	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2723	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"CDH1, AQP2, GATA3, WFDC223, MAL24"	Distal nephron	Organoids	Kidney	31784515	Nat Commun	Single cell census of Human kidney organoids shows reproducibility and diminished off-target cells after transplantation	GSE136314
2724	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, PECAM1, KDR"	Endothelial cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2725	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"GNG11, CALM1"	Endothelial cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2726	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"PAX2, PAX8, KRT19"	Epithelial cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2727	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"TAGLN, ACTA2, MGP"	Stromal cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2728	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"MAB21L2, CXCL14, PRRX1"	Stromal cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2729	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"DLK1, GATA3, IGFBP5"	Stromal cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2730	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"COL2A1, COL9A3, CNMD"	Stromal cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2731	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	CDH6	Early nephrons	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2732	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"HNF1B, POU3F3, KRT18, DKK1, GFRA1"	Early nephrons	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2733	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"CRABP2, NKD1, CITED1, SIX1, ITGA8"	Early nephrons progenitors	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2734	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"KDR, TEK, FLT1, CDH5, PECAM1"	Endothelial cells	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114544
2735	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ectoderm cells	"PAX6, FGF5"	Ectoderm cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2736	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD34, KDR, PECAM1"	Endothelial cells	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2737	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD31, GATA3"	Endothelial cells	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2738	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	PAX3	Stromal cells	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2739	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, CLDN5"	Endothelial cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2740	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CSF1R, CD74, C3"	Microglia cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2741	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MYOD1, MYOG"	Muscle cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2742	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NTRK2, PTN, FABP7"	Aeural cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2743	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endoderm cells	"GATA6, AFP"	Endoderm cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2744	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	ClEC10A	Dendritic cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
2745	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
2746	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CCND1, EPCAM"	Epithelium	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2747	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"EMX2, OTX2"	Forebrain primordium progenitor-like cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2748	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"FABP7, TTYH1, SOX2"	Glial cells	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2749	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT8, KRT18, CD24, VCAM1"	Glomerular parietal epithelial cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2750	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"VCAM1, KRT18"	Glomerular parietal epithelial cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2751	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"VCAM1, KRT18, CD24"	Glomerular parietal epithelial cells (1)	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2752	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT18, KRT8, CD24"	Glomerular parietal epithelial cells (2)	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2753	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, MS4A1"	B cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2754	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, MS4A1"	B cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2755	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, MS4A1"	B cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2756	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, MS4A1"	B cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2757	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, MS4A1"	B cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2758	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GZMK, FOXP3, IKZF2, HELIOS"	T regulatory (Treg) cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2759	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GZMK, CXCL13, CXCR5, PDCD1, MAF, CD200"	TFH cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2760	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GZMK, PRDM1, CCL5, CXCR6"	Effector memory CD4+ T cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2761	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMK, ZNF683, HOBIT, ITGAE, ITGA1, XCL1, KLF2"	Resident memory cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2762	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMK, CD69, TCF7, KLF2, LEF1"	CCR7+SELL+TCF7+ central memory T cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2763	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, FLT3,"	CD1C DCs	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2764	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD16, CX3CR1"	CD16 patrolling monocytes	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2765	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD3E, CD3D, CD56, NCAM1, DAP12, TYROBP"	Natural killer (NK) cells	Tissue	Kidney	31209404	Nat Immunol	The immune cell landscape in kidneys of patients with lupus nephritis	phs001457.v1.p1
2766	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PLVAP, VAMP5, EMCN"	Endothelial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2767	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"HBM, HBB, HBA1"	Erythrocytes	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2768	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"LYZ, PTPRC, IL1B"	Immune cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2769	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ETV2, FOXC2"	Early endothelial cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2770	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD31, CD34, PECAM1, SOX17, KDR"	Endothelial cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2771	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"KDR, NRP2, ESM1, SOX17, CD31, CD34, FLT1"	Endothelial cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2772	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5, FLT1, SOX17"	Mature endothelial cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2773	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLI1, TAL1, KDR, CD31, FLT1, CDH5, CD34, MEF2C"	Vascular endothelial cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2774	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"SULTEI1, TCF21, ALDH1A2, VACM1, FABP2, LUM, SFRP2, DCN, MEIS1, TAGLN, POSTN, REN MGP, GATA3"	Interstitial cells of Cajal	Tissue	Kidney	29449449	J Am Soc Nephrol	Conserved and Divergent Features of Mesenchymal Progenitor Cell Types within the Cortical Nephrogenic Niche of the Human and Mouse Kidney	GSE102596
2775	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"DES, COL3A1, COL1A1, SERPINE2, FGF7, LEF1, DCN"	Interstitial cells	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114541
2776	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"SULT1E1, OLFML3, ANGPT1"	Interstitial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2777	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"PBX1, MEIS2, COL8A1"	Interstitial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2778	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"GUCY1A3, TGFBI, ZEB2"	Interstitial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2779	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Interstitial cells	"COL3A1, COL1A1, MEIS1, PDGFRA, COL1A2, HIST1H4C, HMGB2"	Interstitial cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2780	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"GDNF, FOXD1"	Interstitial progenitors	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114540
2781	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"SFRP2, C8orf4, CLDN10, LTF, GABRP, CST6"	Kidney epithelial cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2782	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	"CD37, CD48, ITGB2, IFI30, IL1B"	Leukocytes	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114545
2783	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"IGFBP5, POSTN, SULF1, THBS2, CCL26, CCDC80"	Lymphatic epithelial cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2784	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, FCER1A, CLEC10A"	CDC2	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107585"
2785	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, XCR1, BATF3, IDO1, THBD"	CDC1	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107586"
2786	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"ITGAX, ITGAM"	Myeloid cells	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107587"
2787	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	PTPRC	Pan immune (common leukocyte Ag)	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107588"
2788	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD14	"Macrophage, classical monocyte"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107589"
2789	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	FCGR3A	"NK cell, NKT cell, non- classical monocyte"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107590"
2790	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"IL3RA, CLEC4C, GZMB"	Plasmacytoid DC	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107591"
2791	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, S100A9, S100A12"	Classical monocyte	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107592"
2792	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	FCGR3B	Neutrophil	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107593"
2793	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"AQP9, MNDA"	Granulocyte	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107594"
2794	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"GATA2, CPA3, KIT"	Mast cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107595"
2795	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	RORC	ILC	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107596"
2796	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	GNLY	"NK, NKT, CD8 T cell"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107597"
2797	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	NCAM1	"NK, NKT cell"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107598"
2798	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	GZMA	NK cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107599"
2799	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	IL7R	"T cells, ILC"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107600"
2800	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRAC, TRBC1, TRBC2, CD3D, CD3E, CD3G, LEF1"	T cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107601"
2801	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, GZMK"	CD8 T cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107602"
2802	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"PRF1, GZMH, NKG7, GZMC"	"CD8 T, NKT, NK cell"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107603"
2803	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	GZMA	NK cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107604"
2804	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD4	CD4 T cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107605"
2805	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	HLA-DRA	"Mononuclear phagocytes, B cell"	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107606"
2806	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, IGKC, IGHA1, IGHM, IGHG1, CD74"	B cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107607"
2807	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	PF4	Megakaryocytes	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107608"
2808	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD14	Infiltrating macrophages	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
2809	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD86	M1 macrophages	Tissue	Kidney	32586940	Clin Cancer Res	Macrophage HIF-1alpha is an independent prognostic indicator in kidney cancer	NA
2810	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD163	M1 macrophages	Tissue	Kidney	32586940	Clin Cancer Res	Macrophage HIF-1alpha is an independent prognostic indicator in kidney cancer	NA
2811	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	C1QC	Resident macrophage	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
2812	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"HLA-DRA, C1QA, C1QB, HLA-DPA1, HLA-DPB1, C1QC"	Macrophages	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2813	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"MAL, CLDN10, HES1"	Medial/distal nephron precursor	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2814	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B"	B cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2815	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD14"	Monocytes	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2816	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2817	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"MYOG, MYOD1"	Muscel progenitors	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2818	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"LHX1, PAX8, EPCAM, JAG1, COL3A1, COL1A1, MEIS1, PDGFRA, HIST1H4C, HMGB2, CCND1, HES4, MKI67"	Nascent nephron	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2819	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"LIN28A, MEOX1, CITED1, EYA1"	Nephron	Organoids	Kidney	30573816	Nat Methods	Evaluation of variability in Human kidney organoids	GSE108291
2820	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	PAX2	Nephron	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2821	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"WT1, CDH1, CK8"	Nephron	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2822	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"FAM151A, SLC22A8, ALDOB, GLYAT, SLC13A1, DPEP1, HNF1A, HNF4A, HNF4G, SLC5A2"	Proximal tubule	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107609"
2823	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	VCAM1	Distinct proximal tubule	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107610"
2824	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	PROM1	Epithelial progenitor	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107611"
2825	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	CALB1	Connecting tubule	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107612"
2826	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"PTH2R, CRB2, AQP1, EDH3"	Glomerulus	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107613"
2827	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"NPHS1, NPHS2, PODXL, WT1, PTPRO, CD2AP, ITGB5, SYNPO, CLDN5, CLIC5"	Podocyte	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107614"
2828	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	SLC12A3	Distal convoluted tubule	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107615"
2829	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"CLDN16, UMOD, SLC12A1"	Thick ascending limb loop of Henle	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107616"
2830	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"AQP2, AQP3"	Principal cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107617"
2831	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	PTGS2	Macula densa	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107618"
2832	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"PVALB, CLNK, TMEM213"	Collecting duct	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107619"
2833	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	SLC4A1	Type A intercalated cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107620"
2834	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	SLC26A4	Type B intercalated cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107621"
2835	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"CLCNKA, CLCNKB"	Collecting duct cells	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107622"
2836	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	FOXI1	Intercalated cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107623"
2837	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	SLC14A2	Inner medullary collecting duct cell	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107624"
2838	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	SAA2	Pelvic epithelium	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107625"
2839	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"UPK1A, UPK1B"	Transitional epithelium of ureter	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107626"
2840	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	UPK3A	Pelvis/urothelium	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107627"
2841	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	S100P	Pelvic epithelium and transitional epithelium of ureter	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107628"
2842	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	DHRS2	Pelvic epithelium and transitional epithelium ofureter	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107629"
2843	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	Agrp2	Nephron epithelial cells	Tissue	Kidney	31506348	Proc Natl Acad Sci	Enhancement of LIN28B-induced hematopoietic reprogramming by IGF2BP3	GSE131882
2844	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"PODXL, PTPRO"	Nephron epithelial cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2845	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	PODXL	Nephron epithelial cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2846	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"OSR1, SIX1, SIX2, CITED1, EYA1, SALL1, MEOX1, GDNF, ETV4, COL2A1, HES1, CRABP2, LEF1, ITGA8"	Nephron progenitors	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114530
2847	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"PAX2, WT1, LHX1, OSR1, SIX1, EYA1"	Nephron progenitors	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2848	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"SIX1, SIX2, CITED1, LYPD1, DAPL1"	Nephron progenitors	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2849	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"SIX2, CITED1, DAPL, LYPD1"	Nephron progenitors	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2850	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"TMEM100, CITED1, MEOX1"	Nephron progenitors	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2851	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"SIX1, SIX2, SALL1, CITED1, TMEM100, ITGA8, ECEL1, WT1, EYA1"	Nephron progenitors	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2852	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"PAX2, LHX1, PAX8"	Nephron progenitors	Organoids	Kidney	31784515	Nat Commun	Single cell census of Human kidney organoids shows reproducibility and diminished off-target cells after transplantation	GSE136314
2853	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SOX10, MPZ, PLP1"	Neural crest cells	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2854	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"MSX1, MSX2, ZIC1, ZIC2"	Pre-EMT(Pre-epithelial-to-mesenchymal transition) NCCs I	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2855	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TWIST1, COL3A1, COL1A2"	EMT NCCs	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2856	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"HES6, STMN2"	Neural progenitors	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2857	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2858	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DNC, COL1A2, LMN"	Fibroblasts	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2859	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, KLRB1"	Natural killer (NK) cells	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2860	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"ACTA2, TAGLN, ITGA8, SYNPO2"	Vascular smooth muscle cells	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2861	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	S100A8	Neutrophils	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
2862	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Osteoblasts	"LUM, SFRP4, DCN, COL3A1, FN1, IBSP"	Osteoblasts	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2863	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"LIX1, CLDN1, CDH6"	Parietal epithelial cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2864	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"NPHS1, NPHS2, PTPRO"	Podocytes	Organoids	Kidney	30573816	Nat Methods	Evaluation of variability in Human kidney organoids	GSE108291
2865	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"PODXL, NPHS2, TCF21"	Podocytes	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2866	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"PTPRO, NPHS2, NPHS1, PODXL, TGFBR3, CLIC5, CITED2"	Podocytes	Tissue	Kidney	30789893	PLOS BIOLOGY	Single-cell transcriptomics reveals gene expression dynamics of Human fetal kidney development	GSE114536
2867	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"NPHS1, MAFB"	Podocytes	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2868	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"NPHS1, NPHS2"	Podocytes	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2869	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"NPHS1, NPHS2, MAFB"	Podocytes	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2870	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"NPHS2, MAFB, PTPRO"	Podocytes	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2871	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"CLIC5, MAFB, PODXL"	Podocytes	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2872	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	NPHS1	Podocytes	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2873	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"NPHS2, NPHS1, SYNPO, WT1"	Podocytes	Organoids	Kidney	31784515	Nat Commun	Single cell census of Human kidney organoids shows reproducibility and diminished off-target cells after transplantation	GSE136314
2874	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"NPHS1, NPHS2, PODXL, CRB2"	Podocytes	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2875	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	"PODXL, NPHS2"	Podocytes	Organoids	Kidney	33326782	Cell Rep	Human Pluripotent Stem Cell-Derived Kidney Organoids with Improved Collecting Duct Maturation and Injury Modeling	GSE131086
2876	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"TCF21, PODXL, VEGFA, NPHS1, PTPRO"	Podocytes	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2877	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CTGF, OLFM3, MAFB, NPHS1"	Podocyte precursors	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2878	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"DAPL1, LYPD1, SIX1, CRABP2"	Nephron progenitors	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2879	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"IGFBP7, FXYD2, CDH6, HNF1B"	Proximal precursors	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2880	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, EMX2, SPP1, MAL, PAX2"	Distal precursors	Organoids	Kidney	30674341	Genome Med	Single-cell analysis reveals congruence between kidney organoids and Human fetal kidney.	GSE114802
2881	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"HBB, HBA2, HBA1, AHSP, HBD, CA1"	Progenitor red blood cells (prbc)	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2882	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nephron	"TOP2A, SIX1, TMEM100"	Proliferative nephron progenitor cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2883	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	"CUBN, HNF4A"	Proximal tubular cells	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2884	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	"MT1G, HNF4A, CUBN, LRP2"	Proximal tubular cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2885	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	"SLC3A1, LGALS2, APOA1"	Proximal tubular cells	Tissue	Kidney	31265809	Dev Cell	In Vivo Developmental Trajectories of Human Podocyte Inform In Vitro Differentiation of Pluripotent Stem Cell-Derived Podocytes	GSE124472
2886	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	"LRP2, SPP1"	Proximal tubular cells	Organoids	Kidney	31784515	Nat Commun	Single cell census of Human kidney organoids shows reproducibility and diminished off-target cells after transplantation	GSE136314
2887	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	"SLC13A3, SLC34A1, GPX3, DCXR"	Proximal tubular cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2888	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	NA	Proximal tubular cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2889	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	NA	Proximal tubular cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2890	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	DCXR	Proximal tubular cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2891	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	SLC22A8	Convoluted tubule	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2892	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	SLC22A7	Straight tubule	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2893	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	SLC22A7	Proximal tubular cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2894	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	LTL	Proximal tubular cells	Organoids	Kidney	33326782	Cell Rep	Human Pluripotent Stem Cell-Derived Kidney Organoids with Improved Collecting Duct Maturation and Injury Modeling	GSE131086
2895	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	"MT1G, MT1E, MT1H, MT1X, APOE, PDZK1IP1, CYB5A"	Proximal tubular cells	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2896	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20, CD21"	B cells	Tissue	Kidney	32586940	Clin Cancer Res	Macrophage HIF-1alpha is an independent prognostic indicator in kidney cancer	NA
2897	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CD31	Endothelial cells	Tissue	Kidney	32586940	Clin Cancer Res	Macrophage HIF-1alpha is an independent prognostic indicator in kidney cancer	NA
2898	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD68, CD14"	Monocytes/macrophages	Tissue	Kidney	32586940	Clin Cancer Res	Macrophage HIF-1alpha is an independent prognostic indicator in kidney cancer	NA
2899	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	NDUFA4L2	Tumor associated macrophages	Tissue	Kidney	32586940	Clin Cancer Res	Macrophage HIF-1alpha is an independent prognostic indicator in kidney cancer	NA
2900	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, HLA-DPB1, ITM2C, IGHG2"	B cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2901	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PLVAP, PECAM1, FLT1, PTPRB"	Endothelial cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2902	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL3A1	Fibroblasts	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2903	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSB2, TPSAB1, CTSG, CPA3, MS4A2, HPGDS, HDC,"	Mast cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2904	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, CD14"	Monocytes	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2905	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"GNLY, NKG7, CD3D"	Natural killer T (NKT) cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2906	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79B, CD79A"	B cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2907	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	FLT1	Endothelial cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2908	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL3A1	Fibroblasts	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2909	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSB2	Mast cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2910	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	LYZ	Monocytes	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2911	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	CD3D	Natural killer T (NKT) cells	Tissue	Kidney	32754283	Theranostics	Single-cell analysis reveals immune landscape in kidneys of patients with chronic transplant rejection	GSE131685
2912	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	"SOX10, PLP1, S100B"	Schwann cell progenitors	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2913	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	PHOX2B	Motor neurons	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2914	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROD1, POU4F1, SIX1"	Sensory neurons	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2915	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"ONECUT-2, ISL1, LHX1"	Spinal motor neurons	Tissue	Kidney	32946775	Cancer Cell	Single-Cell Characterization of Malignant Phenotypes and Developmental Trajectories of Adrenal Neuroblastoma	"GSE137804, GSE49710"
2916	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"MEIS2, PDGFRB"	Stromal cells	Organoids	Kidney	30846463	Development	Kidney micro-organoids in suspension culture as a scalable source of Human pluripotent stem cell-derived kidney cells	"GSE117211, GSE108291"
2917	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"CRABP1, CRABP2, SIX1"	Stromal cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2918	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblast	"LUM, TNC, COL1A1"	Fibroblast	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107630"
2919	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblast	PDGFRB	Myofibroblast	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107631"
2920	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"CRABP1, CRABP2, SIX1"	Stromal cells	Organoids	Kidney	30858339	EMBO Reports	Reporter_based fate mapping in Human kidney organoids confirms nephron lineage relationships and reveals synchronous nephron formation	GSE119561
2921	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, IL7R"	T cells	Tissue	Kidney	31896769	Sci Data	Single-cell RNA sequencing of Human kidney	GSE131685
2922	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	IL7R	T cells	Tissue	Kidney	32107344	JCI Insight	Single cell transcriptomics identifies focal segmental glomerulosclerosis remission endothelial biomarker	GSE140989
2923	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GNLY, CCL5, NKG7, CCL4, GZMA, CD52"	T cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2924	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGKC, IGHG1, MZB1, JCHAIN, DERL3, IGHG2"	B cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2925	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"TRAC, CCL5, CD69, CD3D, KLRB1, CXCR4"	Kidney NKT cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2926	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, LYZ, S100A12, FCN1, RETN, MNDA"	Monocytes	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2927	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PLVAP, SPARCL1, A2M, VWF, PECAM1, CLDN5"	Vascular endothelial cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2928	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MGP, SPARCL1, NDUFA4L2, TPPP3, PDGFRB, LHFP"	Vascular smooth muscle cells	Tissue	Kidney	33162821	Int J Biol Sci	Identification of a novel cancer stem cell subpopulation that promotes progression of Human fatal renal cell carcinoma by single-cell RNA-seq analysis	NA
2929	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular cells	"PLVAP, PECAM1, PTPRB, KDR, VCAM1, SLC14A1"	Vascular cells	Tissue	Kidney	30093597	Science	Single-cell transcriptomes from Human kidneys reveal the cellular identity of renal tumors	"EGAS00001002171, EGAS00001002486, EGAS00001002325, EGAS00001002553."
2930	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular cells	"PECAM1, CD34, KDR"	Vascular cells	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2931	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular cells	PLVAP	Fenestrated endothelium	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107632"
2932	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular cells	SLC14A1	Non-fenestrated vasa recta	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107633"
2933	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular cells	PECAM1	Pan-endothelium	Tissue	Kidney	31604275	Science	Spatiotemporal immune zonation of the Human kidney	"GSE5099, GSE35454, GSE60317, GSE81861, GSE95425, GSE107634"
2934	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	KDR	Vascular progenitors	Organoids	Kidney	31303547	Cell Stem Cell	Generation of Human PSC-Derived Kidney Organoids with Patterned Nephron Segments and a De Novo Vascular Network	GSE132026
2935	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD133 huh7	"CD133, CD24, EpCAM"	CD133 huh7	Cell line	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2936	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD24 huh7	CD24	CD24 huh7	Cell line	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2937	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epcam huh7	"CD133, CD24, EpCAM"	Epcam huh7	Cell line	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2938	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ex-cth17	"CCR6, RORA, RORC, IL23R"	Ex-cth17	Tissue	Liver	33248023	Cell	Liver Immune Profiling Reveals Pathogenesis and Therapeutics for Biliary Atresia	NA
2939	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fetal hepatocytes	DLK1	Fetal hepatocytes	Cell line	Liver	33290741	Cell Syst	Gene Regulatory Network Analysis and Engineering Directs Development and Vascularization of Multilineage Human Liver Organoids	GSE159491
2940	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stellate cells	"UCHL1, PTRRN, SPARCL1"	Inavtive hepatic stellate cells	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
2941	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"EPCAM, KRT19, KRT7"	Malignant cells	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
2942	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"ALB, TTR, APOA2"	Malignant cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
2943	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, C1QB"	Myeloid-derived cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
2944	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stellate cells	"VIM, CYGB, DES, COL1A1, CD166, ALCAM"	Stellate cells	Organoids	Liver	31155493	Cell Metab	Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.	GSE130073
2945	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR6, IL23A"	T helper 17 cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
2946	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Triple+huh7	"CD133, CD24, EpCAM"	Triple+huh7	Cell line	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2947	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Triple-huh7	"CD133, CD24, EpCAM"	Triple-huh7	Cell line	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2948	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"CPS1, EPCAM, KRT, CD68"	Malignant and proliferative tumor cell	NA	Liver	31669305	Am J Pathol	Single cell RNA sequencing identifies YAP1-dependent hepatic mesothelial progenitors in fibrolamellar carcinoma	NA
2949	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Tissue	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2950	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	NANOG	Stem cells	Tissue	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2951	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD8A"	T cells	Tissue	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2952	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Biliary cells	"KRT7, KRT17, OPN, TPOP2,"	Biliary cells	Organoids	Liver	31155493	Cell Metab	Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.	GSE130073
2953	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Biliary cells	"SOX17, NGN3, FOXA2, PROX1"	Biliary tree stem-like cells	Organoids	Liver	31155493	Cell Metab	Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.	GSE130073
2954	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	HMGB1	CD68+ Immune cells	Tissue	Liver	30072988	Front Immunol	"Inflammasome Priming Mediated via Toll-Like Receptors 2 and 4, Induces Th1-Like Regulatory T Cells in De Novo Autoimmune Hepatitis"	NA
2955	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"HMGB1, CARD19, TIMP1"	Monocytes/macrophages	Tissue	Liver	30072988	Front Immunol	"Inflammasome Priming Mediated via Toll-Like Receptors 2 and 4, Induces Th1-Like Regulatory T Cells in De Novo Autoimmune Hepatitis"	NA
2956	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	TNFAIP3	Monocytes/macrophages	Tissue	Liver	30072988	Front Immunol	"Inflammasome Priming Mediated via Toll-Like Receptors 2 and 4, Induces Th1-Like Regulatory T Cells in De Novo Autoimmune Hepatitis"	NA
2957	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	TNFAIP3	Monocytes/macrophages	Tissue	Liver	30072988	Front Immunol	"Inflammasome Priming Mediated via Toll-Like Receptors 2 and 4, Induces Th1-Like Regulatory T Cells in De Novo Autoimmune Hepatitis"	NA
2958	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cholangiocytes	"SOX9, EPCAM, KRT19"	Cholangiocytes	Tissue	Liver	30348985	Nat Commun	Single cell RNA sequencing of Human liver reveals distinct intrahepatic macrophage populations	GSE115469
2959	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cholangiocytes	"SPP1, SOX9, SLC2A1, CFTR, LRP2, CDH11, FGF1, EPCAM, SOX4, PLPP2"	Cholangiocytes	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
2960	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cholangiocytes	"FYXD2, TM4SF4, ANXA4"	Cholangiocytes	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
2961	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMA, GZMK"	Cytotoxic T cells	Tissue	Liver	33248023	Cell	Liver Immune Profiling Reveals Pathogenesis and Therapeutics for Biliary Atresia	NA
2962	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CXCR3, IFNG"	Cytotoxic T helper 1	Tissue	Liver	33248023	Cell	Liver Immune Profiling Reveals Pathogenesis and Therapeutics for Biliary Atresia	NA
2963	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	TRGC1	Gamma delta T cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
2964	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EpCAM	Epithelial cells	Organoids	Liver	31155493	Cell Metab	Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.	GSE130073
2965	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD19	B cells	Tissue	Liver	31156626	Front Immunol	Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial cellss.	GSE129933
2966	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CCL21, CD45, CD31, CD146, CD68"	Lymphatic endothelial cells (LECs)	Tissue	Liver	31156626	Front Immunol	Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial cellss.	GSE129933
2967	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	CD43	Hematopoietic progenitors	Cell line	Liver	33298886	Cell Discov	Characterization and generation of Human definitive multipotent hematopoietic stem/progenitor cells	GSE148215
2968	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"EPCAM, KRT19, PROM1, ALDH1A1, CD24"	Hepatic progenitor cells-like cells	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
2969	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatic stellate cells	"ACTA2, COL1A1, TAGLN, COL1A2, COL3A1, SPARC, RBP1"	Hepatic stellate cells	Tissue	Liver	30348985	Nat Commun	Single cell RNA sequencing of Human liver reveals distinct intrahepatic macrophage populations	GSE115469
2970	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatic stellate cells	"IGFBP3, COL3A1, PTH1R, LAMB1, COL6A1, ADAMTSL2, EPS8, ARHGAP6, CCBE1, COL6A2, COL6A3, ADAMTS2, HEYL, DCN"	Hepatic stellate cells	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
2971	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatic stellate cells	"ACTA2, PDGFRB"	Hepatic stellate cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
2972	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatocytes	"ALB, HAMP, ARG1, PCK1, AFP, BCHE."	Hepatocytes	Tissue	Liver	30348985	Nat Commun	Single cell RNA sequencing of Human liver reveals distinct intrahepatic macrophage populations	GSE115469
2973	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatocytes	"HNF4A, CEBPA, RBP4, ASGR1"	Hepatocytes	Organoids	Liver	31155493	Cell Metab	Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.	GSE130073
2974	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatocytes	"G6PC, FGL1, APOA2, FGB, PLG, C3, ALB, PCK1, MUP3, F5"	Hepatocytes	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
2975	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatocytes	"ALB, APOA2"	Hepatocytes	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
2976	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatocytes	"APOC3, FABP1, APOA1"	Hepatocytes	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
2977	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hepatocytes	"ALB, KRT8"	Hepatocytes	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
2978	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"NK1.1, NKp46, CD49a"	Innate lymphoid cells (ILCs)	Tissue	Liver	31393266	eLife	Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells.	GSE124577
2979	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic stem cells	"LSK, CD150"	Hematopoietic stem cells	Cell line	Liver	31412241	Cell Rep	m6_ RNA Methylation Maintains Hematopoietic Stem Cell Identity and Symmetric Commitment	GSE132357
2980	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Kupffer cells	"CD14, FLT1, TLR4, GPBAR1, CD68, EMR1"	Kupffer cells	Organoids	Liver	31155493	Cell Metab	Modeling Steatohepatitis in Humans with Pluripotent Stem Cell-Derived Organoids.	GSE130073
2981	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Kupffer cells	"HCLS1, IL18, MYO1F, FGD2, MAP3K8, LYN, STA1, MARCO, CD163, VSIG4, CD74, MSR1"	Kupffer cells	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
2982	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	PTPRC	Leukocytes	Tissue	Liver	29315726	Hepatology	Single-cell analysis reveals cancer stem cell heterogeneity in hepatocellular carcinoma	NA
2983	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, SLAMF7, BLNK, FCRL5"	B cells	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
2984	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A2, FAP, PDPN, DCN, COL3A1, COL6A1"	Cancer associated fibroblasts (CAFS)	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
2985	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, VWF, ENG, CDH5"	Tumor associated endothelial cells (tecs)	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
2986	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	NA	CD163	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
2987	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"LYZ, CSTA, CD74"	CD68 macrophages	Tissue	Liver	30348985	Nat Commun	Single cell RNA sequencing of Human liver reveals distinct intrahepatic macrophage populations	GSE115469
2988	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	NA	FCN1	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
2989	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Liver	31156626	Front Immunol	Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial cellss.	GSE129933
2990	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, CD68, FCGR3A"	M1 macrophages	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
2991	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	ACTA2	Tumor associated stromal cells	NA	Liver	31669305	Am J Pathol	Single cell RNA sequencing identifies YAP1-dependent hepatic mesothelial progenitors in fibrolamellar carcinoma	NA
2992	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, CD68, CD163"	M2 macrophages	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
2993	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD14	Macrophages	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
2994	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	TREM2	Macrophages	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
2995	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CD163, CD68, CSF1R"	Tumor associated macrophages	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
2996	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"LSK, CD48, CD150, CD48"	Multipotent progenitors (mpps)	Cell line	Liver	31412241	Cell Rep	m6_ RNA Methylation Maintains Hematopoietic Stem Cell Identity and Symmetric Commitment	GSE132357
2997	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MZB1, CD79A, IGJ, DERL3, IGLL5, HERPUD1, SSR4, XBP1, ITM2C, FKBP11"	B cells	Tissue	Liver	31966074	Oncol Lett	Tracking the important role of JUNB in hepatocellular carcinoma by single-cell sequencing analysis	GSE103867
2998	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Arterial cells	"APOD, PTPRZ1, VCAN, TIMP4, NXPH1, TNR, BCAN, LHFPL3, PCDH15, CST3, LRRC4C"	Nervous arterial cells	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
2999	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, PLEKHG1, YES1, OIT3, PTPRB, F8, NOSTRIN, AKAP12, LDB2, DNASE1L3"	Endothelial cells	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
3000	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"KLRB1, TXK, CD247, CCL5, IL2RG, KLRG1, ITGAL, CXCR4, LTB, PAX5, TLR1"	NKT/B cells	Tissue	Liver	32181701	OMICS	A Multi-Omics Approach to Liver Diseases:Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver	GSE115469
3001	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, KRT19"	Normal epithelial cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3002	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	MZB1	Plasma cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3003	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGLL1, MZB1"	Plasma cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3004	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	TCF4	Plasmacytoid dentritic cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3005	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"LEF1, OX40"	Activated CD4 T cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3006	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CSF2, TOX2"	Activated CD8 T cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3007	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3008	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3009	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	XCR1	Conventional dendritic cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3010	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	OIT3	Endothelial cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3011	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	KRT7	Epithelial cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3012	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3013	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	FCN2	Sinusoidal endothelial cells	Tissue	Liver	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3014	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD79A"	B cells	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
3015	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, CD1C"	Dendritic cells	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
3016	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ENG, VWF"	Endothelial cells	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
3017	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"ACTA2, COL1A2"	Fibroblasts	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
3018	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD7, FGFBP2, KLRF1, GZMB, GZMK, PRF1, KLRF1"	Natural killer (NK) cells	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
3019	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, GZMB, PRF1"	Natural killer (NK) cells	Tissue	Liver	32611686	J Immunother Cancer	Identification of FABP5 as an immunometabolic marker in Human hepatocellular carcinoma	NA
3020	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	FOLR2	Tumor associated macrophages 1	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3021	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"PDPN, LYVE-1, VEGFR3"	Lymphocytes	Organoids	Liver	32961356	Cell Mol Gastroenterol Hepatol	Oxidized Low-Density Lipoprotein Drives Dysfunction of the Liver Lymphatic System	NA
3022	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD69	T cells	Tissue	Liver	30348985	Nat Commun	Single cell RNA sequencing of Human liver reveals distinct intrahepatic macrophage populations	GSE115469
3023	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3	T cells	Tissue	Liver	31156626	Front Immunol	Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial cellss.	GSE129933
3024	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MZB1, CD79A"	B cells	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3025	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, PLVAP, HLA-DRA, CD320, IGFBP3, PLPP3, TFF3"	Endothelial cells	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3026	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"ACTA2, THY1"	Fibroblasts	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3027	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	S100A8	Monocytes	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3028	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, CD14"	Myeloid cells	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3029	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3030	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, GZMA, GZMB, GZMH, PRF1"	CD4 cytotoxicity T cells	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
3031	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8, GZMA, GZMB, GZMH, PRF1"	CD8 cytotoxicity T cells	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
3032	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CCR7"	Naive T cells	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
3033	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD2, CD3E, CD3D, CD3G, CD8, GNLY"	Effector T cells	NA	Liver	31588021	Cancer Cell	Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer	GSE125449
3034	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CORO1A__D52__D3D__TM2A__OPX__CL4__ZMA__CL5__XCL13__CL3	T cells	Tissue	Liver	31966074	Oncol Lett	Tracking the important role of JUNB in hepatocellular carcinoma by single-cell sequencing analysis	GSE103867
3035	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMK, PRF1, IFNgamma"	CD8 T cells	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
3036	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IGIT, CTLA4, GITR"	CD4 Tregs	NA	Liver	32505533	Journal of Hepatology	Single cell transcriptomic architecture and intercellular crosstalk of Human intrahepatic cholangiocarcinoma	GSE138709
3037	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	FABP5	CD8 T cells	Tissue	Liver	32611686	J Immunother Cancer	Identification of FABP5 as an immunometabolic marker in Human hepatocellular carcinoma	NA
3038	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8A, IL7R"	T cells	Tissue	Liver	32611686	J Immunother Cancer	Identification of FABP5 as an immunometabolic marker in Human hepatocellular carcinoma	NA
3039	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TIM3, CTLA4, LAG3, PDCD1, TIGIT"	Exhausted T cells	Tissue	Liver	32611686	J Immunother Cancer	Identification of FABP5 as an immunometabolic marker in Human hepatocellular carcinoma	NA
3040	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, IL7R, CD8"	T cells	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3041	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3G"	T cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3042	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	SPP1	Tumor associated macrophages 2	NA	Liver	32976798	Cell	Onco-fetal Reprogramming of Endothelial cellss Drives Immunosuppressive Macrophages in Hepatocellular Carcinoma	GSE156337
3043	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"AIM2, GPR183"	B_c1	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3044	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"TCL1A, IGHD, IL4R"	B_c2	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3045	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"XBP1, MZB1, CD38"	B_c3	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3046	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"APOA2, APOC1, APOA1"	B_c4	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3047	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"SLC11A1, FGR, TNFRSF1B"	B_c5	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3048	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CCR7, TCF7, IL7R"	CD4_c1	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3049	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"FOXP3, TIGIT, CTLA4"	CD4_c2	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3050	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CCL5, GZMK, GZMA"	CD4_c3	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3051	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"NKG7, FGFBP2, GNLY"	CD4_c4	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3052	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"IFIT1, IFIT2, IFIT3"	CD4_c5	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3053	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"FGFBP2, GZMB, GNLY"	CD8_c1	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3054	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"SLC4A10, KLRB1, ZBTB16"	CD8_c2	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3055	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CTLA4, HAVCR2, PDCD1"	CD8_c3	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3056	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"XCL1, XCL2, ITGAX"	CD8_c4	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3057	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCR7, SELL, GPR183"	CD8_c5	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3058	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CTLA4, PDCD1, TIGIT, HAVCR2, LAG3"	CD8 T cells	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3059	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"STAT2, IRF9, IRF7"	NK_c5	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3060	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"LAIR2, IGFBP7, CD55"	NK_c1	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3061	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"LAG3, PTMS, S100A6"	NK_c4	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3062	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"TOX2, CXCR6, XCL1"	NK_c2	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3063	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"MYOM2, CX3CR1, PRF1"	NK_c6	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3064	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	TREM2	M2 macrophages	Tissue	Liver	33298893	Cell Discov	Global immune characterization of HBV/HCVrelated hepatocellular carcinoma identifies macrophage and T-cell subsets associated with disease progression	NA
3065	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD79A"	B cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3066	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD27, FOXP3, LAIR2"	Treg FOXP3	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3067	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"LAYN, TNFRSF9, ICOS"	Treg LAYN	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3068	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CCR7	CD4 CCR7	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3069	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	IL2	CD4 IL2	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3070	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CCR6	CD8 CCR6	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3071	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"AP-1, JUN, FOSB, NR4A1, CD69, RUNX3"	CD8 NR4A1	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3072	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMK, GZMA, NKG7"	CD8 GZMK	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3073	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMA, GZMB, GZMK, TIGHT, CTLA4, LAG3"	CD8 XCL1	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3074	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"PDCD1, HAVCR2, CTLA4, TIGIT, LAG3"	CD8 CTLA4	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3075	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"PDCD1, HAVCR2, CTLA4, TIGIT, LAG3"	CD8 LAG3	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3076	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CDH5"	Endothelial cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3077	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCN1, APOBEC3A, THBS1"	Mono 1 cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3078	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"PRF1, GNLY, KLRC4-KLRK1"	Mono 2 cells	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3079	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRF1, KLRD1, GNLY, GZMB, PRF1, HAVCR2, KIR2DL-1, KIR2DL-3"	NK CD16	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3080	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRF1, KLRD1, CD69, NR4A1, CD160, CXCR6 , FCGR3A"	NK CD160	NA	Liver	33357445	CELL	Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma	NA
3081	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bud tip adjacent	"MYL9, AGER, CLIC3, TNNC1, CAV1, SMARCA5, CPM, S100A10, CLDN6, SFTA3, ICAM4, CLDN18, FOLR1, SPARC, AQP4, EDN3, NGFRAP1, NDNF, PDPN, TMSB10, PCP4, ANKRD29, RPS20, FTL, NREP, WIF1, MXRA8, RPS3, ANXA3, NKX2-1, MBIP, TSPAN13, TUBB, RPL5, CD47, ZFAS1, HOPX, PTMA, SFTPB, KCNJ15, NPM1, RPL31, GSTM3, PRSS8"	Bud tip adjacent	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3082	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Capillaries	CA4	Capillaries	Tissue	Lung	31935371	Cancer Cell	An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial cells Heterogeneity and Angiogenic Candidates.	GSE77199
3083	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Clara cells	"SCGB1A1, SCGB3A1, SCGB3A2"	Clara cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3084	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Copd-injured alveolar cells	"MMP7, CXCL14"	ALVEOLAR 4	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3085	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cuboidal alveolar type 2 cells	"SFTPA1, SFTPA2, SFTPC, PGC"	ALVEOLAR 1	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3086	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dividing cells	"MKI67, CDK1"	Dividing cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3087	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epcam+	AT1	Epcam+	Organoids	Lung	32891189	Cell Stem Cell	Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells	"GSE149813, GSE149909"
3088	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epidermal or vascular cells	"COL3A1, COL1A2, IGFBP7"	Epidermal or vascular cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3089	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibrosis	"IL1RN, MMP9, CHI3L1, SPP1, MARCKS, PLA2G7"	Fibrosis	Tissue	Lung	30554520	Am J Respir Crit Care Med	Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis	NA
3090	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Flat alveolar type 1 cells	"AGER, CAV1"	ALVEOLAR 3	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3091	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"RP5-887A10.1, AL928768.3"	B-CELL 2	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3092	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	G0 stage of cell cycle	G0S2	G0 stage of cell cycle	Tissue	Lung	32298651	Cell	Regenerative Metaplastic Clones in COPD Lung Drive Inflammation and Fibrosis	GSE118950
3093	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	G2 or m stage of cell cycle	"UBE2C, AURKA, CENPA, CDC20, HMGB2, CKS2, CKS1B"	G2 or m stage of cell cycle	Tissue	Lung	32298651	Cell	Regenerative Metaplastic Clones in COPD Lung Drive Inflammation and Fibrosis	GSE118950
3094	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"PIGR, LYZ, MUC5B, BPIFB1, FCGBP, CEACAM5, ZG16B, HCK, RP11-1143G9.4, TSPAN8, TGM2, CAPN8, LCN2, CREB3L1, SFTPA2, SCGB3A1, CEACAM6, FAM3D, TFF3, SPINK5, BMPR1B, SLPI, DEFB1, SLC4A4, MT3, KLK11, ITLN1, LRMP, GSTA2, XBP1, CP, S100P, RP11-294O2.2, RARRES1, HBM, HLA-DRA, SPDEF, GSTA1, FAM46C, GALNT"	Goblet-like secretory	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3095	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Human lung alveolar type 2	"SFTPB, NKX2-1"	Human lung alveolar type 2	Tissue	Lung	33142113	Cell Stem Cell	Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2	EGAS00001004508
3096	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intermediate ciliated	"ANKUB1, HS3ST6, C1orf110, MAP6, LPPR3, MUC16, GSTA2, FRMPD2, LRRC10B, OMG, SLC7A2, AC013264.2, CCDC17, PSCA, DHRS9, ABCA13, IFI27, C1orf173, EPB41L4B, MB, AK7, NWD1, HRASLS2, KRT4, WI2-1959D15.1, TSPAN19, CCDC113, TCTEX1D1, TEX26, CDHR3, DNAH2, CCDC170, C17orf72, FAM154B, KCNE1, C1orf222"	Intermediate ciliated	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3097	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ionocytes	"PCP4, FOX1, FAM24B, CLCNKB, ATP6V1G3, ASCL3"	Ionocytes	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3098	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Langerhans cells	"CD1C, CD1E, PKIB, CD1A, FCER1A"	MYELOID 5	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3099	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	CFTR	Leukocytes	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3100	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lung alveolar type 2 cells	HSPA1A	Lung alveolar type 2 cells	Tissue	Lung	33142113	Cell Stem Cell	Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2	EGAS00001004508
3101	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphangioleiomyomatosis	"PMEL, FIGF, CTSK"	Lymphangioleiomyomatosis	Tissue	Lung	32603599	Am J Respir Crit Care Med	Single Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell	GSE135856
3102	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphatics	PROX1	Lymphatics	Tissue	Lung	30554520	Am J Respir Crit Care Med	Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis	NA
3103	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGHA1, IGHA2"	B-CELL 5	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3104	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"JCHAIN, MZB1, IGHM, IGLL5, IGLC7, IGHD"	B-CELL 7	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3105	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	"PDGFRa, DCN, SFRP4, COL3A1, COL1A1, ACTA2"	Fibrotically activated macs	Tissue	Lung	33159078	Nat Commun	mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline.	GSE139819
3106	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	"PDGFRa, DCN, SFRP4, MYLK, MYL9, DES"	Differentiated smooth muscle cells	Tissue	Lung	33159078	Nat Commun	mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline.	GSE139819
3107	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Multiciliated cells	"TMEM190, CAPS, C9orf24, C20orf85, C1orf194, FAM183A, OMG, RP11-356K23.1, PIFO, AGR3, RSPH1, ODF3B, SNTN, DYNLRB2, FABP6, DNAAF1, CCDC78, TSPAN1, TPPP3, C5orf49, MS4A8, C9orf116, CAPSL, C9orf117, CETN2, SMIM22, AC013264.2, MORN5, CRIP1, TSPAN19, TMC5, MRPS31, CDHR3, FAM92B, MORN2, TUBB4B, FA"	Multiciliated cell	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3108	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Multiciliated cells	"CDC20B, HES6, LRRC26, CCDC67, HYLS1, NEK2, CDC20, PLK4, ANLN, POC1A, HIST1H2BJ, E2F7, FOXN4, MCIDAS, SYT5, MELK, SAG, RIBC2, CDK1, STIL, MUC12, SGOL2, KDELC2, ZMYND10, CCDC74A, TOP2A, CEP152, CCDC19, CEP78, ASF1B, CCNO, RP11-263K19.4, C1orf192, CENPW, SPAG6, CEP41, PITPNM1, C21orf128, C11orf8"	Multiciliated precursor	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3109	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	NA	"HLA-DRA, CD14, FUT4, FCGR3A, FCGR3B"	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3110	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"ITGAX, CSF1R, IL10"	Myeloid-derived suppressor cells (mdsc)	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123920
3111	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myocytes	"MYH11, MYL9, PDLIM3"	Myocytes	Tissue	Lung	32603599	Am J Respir Crit Care Med	Single Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell	GSE135851
3112	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"LYZ, SFTPA1, SFTPA2, PGC, CXCL5, SLPI"	Maturation-AEC2	Cell line	Lung	32004478	Cell Stem Cell	Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors.	GSE137811
3113	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	SCGB1A1	Airway epithelial cells	Tissue	Lung	33419885	Eur Respir J	ERG-Mediated Coregulator Complex Formation Maintains Androgen Receptor Signaling in Prostate Cancer	NA
3114	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hung cells	"FOLR1, AGR3, SFTPD"	Normal hung lung cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6656
3115	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pdc	LILRA4	Pdc	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3116	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RGS5, PDGFRB, MCAM, CSPG4, NES"	Pericytes	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3117	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	MKI67	Proliferating cells	Organoids	Lung	32413319	Cell	SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues	GSE148829
3118	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	S stage of cell cycle	SLBP	S stage of cell cycle	Tissue	Lung	32298651	Cell	Regenerative Metaplastic Clones in COPD Lung Drive Inflammation and Fibrosis	GSE118950
3119	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	MUC5B	Secretory cells	Organoids	Lung	33259798	Cell Stem Cell	Direct Exposure to SARS-CoV-2 and Cigarette Smoke Increases Infection Severity and Alters the Stem Cell-Derived Airway Repair Response.	GSE161089
3120	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Submucosal gland	"LTF, TM4SF1, AZGP1, TTYH1, CALML5, MIA, CCL28, KCNN4, FOXC1, GLYATL2, INHBA, SLCO1A2, NOXO1, SLC5A1, ALDH1A3, NDRG2, KRT7, TSPAN8, FABP7, PHLDA1, GMDS, SLPI, RPL36, EHF, BARX2, ZG16B, DSC2, KRT23, SCGB3A1, APIP, MUC5B, WFDC2, FAM3D, SOX9, KIAA1324, EPHB3, LA16c-380H5.4, GABRP, FAM46B, SPDEF, RP"	Submucosal gland	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3121	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Submucosal gland basal	"NTRK2, CD70, SAA1, BCL2A1, KREMEN2, STRA6, SOX10, BCAN, LGR6, SYNPO2, CSPG4, MIA, SERPINA11, C1QTNF1, CXCR4, LAMP5, EDAR, ANO1, ABTB2, NPPC, SERPINE2, TMEM158, PDE4B, SPHK1, THY1, COL4A2, SHISA2, COL4A1, TFAP2A, GFRA1, FGFR1, RP11-161M6.2, IL27RA, FABP7, TGFA, FRZB, ADAMTS18, IGFBP4, ETV4, NGF"	Submucosal gland basal	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3122	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CXCL13, PDCD1"	T follicular helper cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3123	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD2, CD3D, CD3E, CD3G, CD8A, CTLA4, IFNG, IL7R"	T helper	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123912
3124	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"ICOS, LRBA, ITM2A, FAM111A, PHF10, NUP107, SEC24C, P1L4, BATF, ASF1A, FRYL, FUSIP1, YME1L1, TRA, RPA1, UBE2L3, ANP32B, DDX50, C13orf34, PPP2R5C, SLC25A12, ATF2, CD28, GOLGA8A, IFNG, LTA, APBB2, DOK5, IL12RB2, APOD, ZBTB32, CD38, CSF2, CTLA4, CD70, DPP4, E"	T cells	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3125	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD4	T helper cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3126	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tip cells	CXCR4	Tip cells	Tissue	Lung	31935371	Cancer Cell	An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial cells Heterogeneity and Angiogenic Candidates.	GSE77199
3127	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	EpCAM	Tumor cells	Tissue	Lung	31935369	Cancer Cell	Treatment-Induced Tumor Dormancy through YAP-Mediated Transcriptional Reprogramming of the Apoptotic Pathway	GSE131604
3128	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"EPCAM, MDK, SOX4"	Tumor cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6653
3129	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"EPCAM, CEACAM6, MKI67"	Tumor cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3130	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Type ii alveolar cells	SFTPB	Type ii alveolar cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3131	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Type1 & type2 alveolar cells	"AGER, SFTPC, SLPI, EPCAM"	Type1 & type2 alveolar cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3132	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Uninfected hat2	AQP5	Uninfected hat2	Tissue	Lung	33142113	Cell Stem Cell	Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2	EGAS00001004508
3133	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Veins	ACKR1	Veins	Tissue	Lung	31935371	Cancer Cell	An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial cells Heterogeneity and Angiogenic Candidates.	GSE77199
3134	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vessels	"PECAM1, VWF, CCL21"	Vessels	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3135	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CCR7, SELL, TCF7"	CD4 rest	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3136	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, IL4R, STAT1, MAL, SOCS1"	CD4 act 1	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3137	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, IL4R, STAT1, MAL, SOCS1, PSAT1, PYCR1, MIR155HG"	CD4 act 2	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3138	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, IL2, ODC1, PSAT1, WARS, PYCR1, TNF, MIR155HG, NME1"	CD4 act 3	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3139	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, IFI6, LGALS3,"	CD4 TRM rest	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3140	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, MAF, TNFRSF18, IL2RA, CTLA4, TNFRSF4"	CD4 TRM act	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3141	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, TNFRSF18, FOXP3, IL2RA, CTLA4, TIGIT, PMCH, TNFRSF4"	CD4 Treg	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3142	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, KLRB1, AMICA1"	CD8 EM/TRM rest	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3143	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, GZMB, IFNG, HOPX, CCL4, CCL3"	CD8 TRM rest	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3144	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, NKG7, GZMK, GNLY, IFIT3, KLRD1, MYO1F, CCL5"	CD8 TEMRA	Tissue	Lung	31624246	Nat Commun	Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease	GSE120221
3145	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Arterial cells	GJA5	Arterial cells	Tissue	Lung	31935371	Cancer Cell	An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial cells Heterogeneity and Angiogenic Candidates.	GSE77199
3146	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	AT1 cells	AGER	AT1 cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3147	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	AT1 cells	"AGER, EMP2"	AT1 cells	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3148	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	AT2 cells	SFTPC	AT2 cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3149	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	AT2 cells	"ABCA3, ALOX15B, FGG, LRRK2, NAPSA, PGC, ROS1, SFTA2, SFTPA1, SFTPA2, SFTPB, SFTPC, SFTPD"	AT2 cells	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3150	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	Aqp5	ATI cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3151	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	SCGB1A1	Bronchial epithelial cells	Tissue	Lung	31080358	Mediators Inflamm	Endothelial heterogeneity across distinct vascular beds during homeostasis and inflammation	NA
3152	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"SFTPC, NPC2, TESC, CA2, ETV5, ASPSCR1, WIF1, CD36, SFTA3, CPM, MFSD2A, TPD52L1, IGFBP7, TPM1, ATP11A, FTL, ID2, COL9A3, BAMBI, SLC34A2, TMSB10, ADAMTS1, MEST, MARCKSL1, NREP, CLDN6, HNRNPA1, NOTUM, PIK3C2G, NPM1, GSTM3, EDNRB, CLDN2, RPL5, RPL6, RPS23, RPL3, RPS3A, HAS3, RPLP0, EEF1A1, RPL11, RPS, SFTPC, NPC2, TESC, CA2, ETV5, ASPSCR1, WIF1, CD36, SFTA3, CPM, MFSD2A, TPD52L1, IGFBP7, TPM1, ATP11A, FTL, ID2, COL9A3, BAMBI, SLC34A2, TMSB10, ADAMTS1, MEST, MARCKSL1, NREP, CLDN6, HNRNPA1, NOTUM, PIK3C2G, NPM1, GSTM3, EDNRB, CLDN2, RPL5, RPL6, RPS23"	Bud tip progenitor	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3153	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	"CLDN18, FOLR1, AQP4, PEBP4"	Alveolar cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3154	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, IGKC, IGLC3, IGHG3, HBB, HBA2, HBA1, HBD, SNCA, SLC25A37, ALAS2, DCAF12, SLC25A39"	Erythroblasts	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3155	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, IGKC, IGLC3, IGHG3, CD20, MS4A1, CXCR4, HLA-DRs"	Follicular B cells(clusters 1 and 2)	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3156	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, IGKC, IGLC3, IGHG3, IGHA1, IGHA2"	MALT B-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3157	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, IGKC, IGLC3, IGHG3, JCHAIN, MZB1, IGHM, IGLL5, IGLC7, IGHD"	MALT B-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3158	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, IGKC, IGLC3, IGHG3, GZMB, LILRA4, CLIC3, SMPD3, PLD4, LILRB4, IRF7, IL3RA, CXCR3, MAP1A, PLAC8, PTCRA, JAML, UGCG, LAMP5, SCT, PPP1R14B, IRF4, SEC61B, ITM2C, C9orf142, CLN8, RSE6, RASD1, IRF8, SPIB, TCL1A, GPR183"	Plasmacytoid dendritic cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3159	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT17, KRT5, SYT8, MMP1, IGFBP6, FHL2"	ALVEOLAR 7	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3160	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CXCL13, ICA1"	T-CELL 9	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3161	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"KLRC1, TRDC"	T-CELL 2	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3162	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"LAG3, CCL4L2, HAVCR2"	T-CELL 4	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3163	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	GZMK	T-CELL 5	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3164	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"KIAA0101, MKI67, TYMS, HMGB2, NUSAP1, RRM2, PCNA, TK1, CDK1, ZWINT, HIST1H4C"	T-CELL 8	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3165	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, IDO1, LSP1, LGALS2, CPVL, CCR7, C1orf54, NAAA, S100B, CCL19, CCL17"	MYELOID 12	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3166	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, FLT1"	Blood Endothelial cellss	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3167	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, MT2A, EDNRB"	Clusters 1	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3168	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, IGFBP3, SPRY1"	Clusters 3	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3169	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, IGFBP3, SPRY1"	Clusters 4	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3170	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, MT2A, EDNRB"	Clusters 5	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3171	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, PDPN, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3172	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, MT2A"	Normal ECs	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3173	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	NA	Normal Endothelial cellss	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3174	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FLT1, CDH5, RAMP2, HSPG2"	Tumour ECs	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3175	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"MT1X, MT2A, IL6, LRRC32, MT1M, SLC2A3, EMP1, CSF3, MT1E, FCN3, AKAP12, TM4SF1, C8orf4, MT1A, SOX7, BIRC3, CLEC2B, TNFAIP3, HES1, ADM"	Endothelial cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3176	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CAPS, TPPP3"	Epithelial cells 1	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3177	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CAPS, TMEM190, PIFO, SNTN"	Epithelial cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3178	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CAPS, TPPP3"	EPITHELIAL 1	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3179	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, DCN, COL1A2, C1R9, COL10A1"	Fibroblasts	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3180	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, DCN, COL1A2, C1R9, COL4A1"	Fibroblasts	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3181	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, DCN, COL1A2, C1R9, PLA2G2A"	Fibroblasts	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3182	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, DCN, COL1A2, C1R9, MMP3"	Fibroblasts	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3183	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, DCN, COL1A2, C1R9, FIGF"	Fibroblasts	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3184	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, DCN, COL1A2, C1R9, CCL2"	Fibroblasts	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3185	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CTHRC1, VCAN, SULF1, COL10A1, POSTN, SFRP4, HTRA3, ASPN"	FIBROBLAST 1	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3186	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COX4I2, HIGD1B, RGS5, GJA4, NDUFA4L2, PDGFRB, COL4A1, PTP4A3, COL4A2, LHFP, PPP1R14A, EGFL6, NOTCH3, PTN, COL18A1, ACTG2"	FIBROBLAST 2	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3187	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PLA2G2A, SFRP2"	FIBROBLAST 4	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3188	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"MMP3, SERPINE2"	FIBROBLAST 5	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3189	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CCL21, TFF3, PDPN, MMRN1, GYPC, RGS16"	EC 6	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3190	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, TPSB2, CPA3, HPGDS, CLU, AREG, MS4A2, RGS13, VWA5A, LAPTM4A, C1orf186, SLC18A2, LTC4S, KIT, HDC, MAOB, RGS1, RP11- 354E11.2, SAMSN1, RGS2, SLC26A2, PTGS1, NSMCE1"	B-CELL 4	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3191	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LST1, IFITM2, LYPD2, CFP, LINC01272, LILRA5"	MYELOID 9	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3192	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, F13A1, FOLR2, SLC40A1, HMOX1"	MYELOID 10ï¼_acrophages	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3193	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, EEF1A1, ALDH2, HLA-DQA2, RBP4, C1QC"	MYELOID 11ï¼_acrophages	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3194	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, CLEC9A, IDO1, LSP1, LGALS2, CPVL, CCR7, C1orf54, AA, S100B, CCL19, CCL17"	MYELOID 12ï¼_ross-presenting dendritic cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3195	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, ISG15, FAM26F, IFIT3, IFIT2, RSAD2, IFIT1, C15orf48, APOBEC3A, CCL8"	MYELOID 4ï¼_acrophages	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3196	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, CD1C, CD1E, PKIB, CD1A, FCER1A"	MYELOID 5ï¼_angerhans cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3197	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, FABP4, MCEMP1"	MYELOID 6ï¼_acrophages	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3198	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, S100A12, S100A9, S100A8, MPT, FCN1, IL1B, CD300E, EREG, CXCL8"	MYELOID 7ï¼_ranulocytes	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3199	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, CRIP1"	MYELOID 8ï¼_acrophages	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3200	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A, LST1, IFITM2, LYPD2, CFP, LINC01272, LILRA5"	MYELOID 9ï¼_onocyte-derived dendritic cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3201	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"LYZ, MARCO, CD68, CD16A, FCGR10A"	Myeloid cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3202	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"MT1X, MT2A, IL6, LRRC32, MT1M, SLC2A3, EMP1, CSF3, MT1E, FCN3, AKAP12, TM4SF1, C8orf4, MT1A, SOX7, BIRC3, CLEC2B, TNFAIP3, HES1, ADM"	EC 1	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3203	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"EDNRB, IL1RL1, HPGD, SOSTDC1, S100A3, CA4, EMCN, SERPINE1, CX3CL1"	EC 5	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3204	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"GPC3, MFAP4, A2M, CYR61, MACF1, GPX3, TIMP3, CFD, FIGF, LTBP4, SEPP1, ADH1B, CTGF, PTGDS, SCN7A, PRELP, MAMDC2, FHL1, DST, AOC3, INMT, NPNT, ELN, USP53, G0S2, FMO2"	FIBROBLAST 6	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3205	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"GZMB, LILRA4, CLIC3, SMPD3, PLD4, LILRB4, IRF7, IL3RA, CXCR3, MAP1A, PLAC8, PTCRA, JAML, UGCG, LAMP5, SCT, PPP1R14B, IRF4, SEC61B, ITM2C, C9orf142, CLN8, RNASE6, RASD1, IRF8, SPIB, TCL1A, GPR183"	Dendritic cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3206	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC1, TRBC2, KLRC1, TRDC"	T-CELL 2ï¼_D8+ T-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3207	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC1, TRBC2, LAG3, CCL4L2, HAVCR2"	T-CELL 4ï¼_D8+ T-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3208	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC1, TRBC2, GZMK"	T-CELL 5ï¼_D8+ T-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3209	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC1, TRBC2, FGFBP2, SPON2, KLRF1, NKG7, PRF1, KLRD1"	T-CELL 6ï¼_atural killer cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3210	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC1, TRBC2, TNFRSF4, IL2RA, LTB, AC133644.2, TNFRSF18"	T-CELL 7ï¼_egulatory T-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3211	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC1, TRBC2, KIAA0101, MKI67, TYMS, HMGB2, NUSAP1, RRM2, PC, TK1, CDK1, ZWINT, HIST1H4C"	T-CELL 8ï¼_D8+ T-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3212	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC1, TRBC2, CXCL13, ICA1"	T-CELL 9ï¼_D4+ T-cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3213	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ACKR1, SPRY1"	EC 3	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3214	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"IGFBP3, HSPG2, INSR, PLVAP, ENPP2"	EC 4	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3215	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"Epcam, CD45, CD11b, CD31"	Endothelial cells	Tissue	Lung	29999500	J Clin Invest	Expansion of hedgehog disrupts mesenchymal identity and induces emphysema phenotype	NA
3216	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"Col1a1, Pdgfra, Tcf21, Ly6a, Ly6c1"	Cluster 1	Tissue	Lung	29999500	J Clin Invest	Expansion of hedgehog disrupts mesenchymal identity and induces emphysema phenotype	NA
3217	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"Col1a1, Pdgfra, Tcf21, Itga8"	Cluster 2	Tissue	Lung	29999500	J Clin Invest	Expansion of hedgehog disrupts mesenchymal identity and induces emphysema phenotype	NA
3218	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"Thy1, Itga8, Thy1"	Proximal mesenchymal fibroblast	Tissue	Lung	29999500	J Clin Invest	Expansion of hedgehog disrupts mesenchymal identity and induces emphysema phenotype	NA
3219	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"Thy1, Itga8, Itga8"	Distal mesenchymal fibroblast	Tissue	Lung	29999500	J Clin Invest	Expansion of hedgehog disrupts mesenchymal identity and induces emphysema phenotype	NA
3220	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, XCR1"	CDC1	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3221	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CLEC10A"	CDC2	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3222	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	"FOXJ1, TPPP3"	Ciliated cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3223	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	FOXJ1	Ciliated cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3224	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	"EPCAM, PIFO, FOXJ1"	Ciliated cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3225	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	FOXJ1	Ciliated cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3226	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	"SLC7A2, SYT5, VSTM2L, ERICH3, ATP12A, POMT2, FGF14, CENPM, RGS22, RRAD, C9orf135, MS4A8, TPPP3"	Ciliated cells	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3227	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	NA	Ciliated cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3228	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	NA	Ciliated cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3229	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	"FOXJ1, CAPS"	Ciliated cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3230	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ciliated cells	DNAAF3	Ciliated cells	Organoids	Lung	33259798	Cell Stem Cell	Direct Exposure to SARS-CoV-2 and Cigarette Smoke Increases Infection Severity and Alters the Stem Cell-Derived Airway Repair Response.	GSE161089
3231	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD11b"	Classical monocytes	Tissue	Lung	31917836	Journal of Experimental medicine	Dynamics of Human monocytes and airway macrophages during healthy aging and after transplant	NA
3232	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	"SCGB1A1, BPIFB1, TMEM45A, SCGB3A1, WFDC2, TSPAN8, CP, SAA2, MUC5B, LTF, PIGR, CXCL1, SCGB3A2"	Club cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3233	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	SCGB1A1	Club cells	Tissue	Lung	30359271	Respir Res	FBXO18 promotes cell proliferation through activation of Akt in lung adenocarcinoma cells	NA
3234	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	"SCGB3A2, SCGB1A1"	Club cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3235	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	SCGB3A2	Club cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3236	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	SCGB1A1	Club cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3237	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	"CXCL6, MUC5B, MSMB, SCGB1A1, BPIFB1, SCGB3A1, TSPAN8"	Club cells	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3238	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Club cells	"SCGB1A1, KRT4, WFDC2, MSLN, SERPINB3, IGF2, S100A9, SLPI, S100P, ANXA1, MUC4, KRT19, UPK1B, CYP2F1, S100A6, CEACAM6, RHOV, LCN2, C19orf33, APOBEC3A, FAM3D, TNNT3, LYPD2, LSP1, ASS1, SERPINB2, GPR110, PDE4C, TCN1, TFF3, MUC20, TACSTD2, ELF3, GABRP, SLC16A9, KRT7, LGALS3, FUT3, PLAC8, VMO1, C15or, SCGB1A1, KRT4, WFDC2, MSLN, SERPINB3, IGF2, S100A9, SLPI, S100P, ANXA1, MUC4, KRT19, UPK1B, CYP2F1, S100A6, CEACAM6, RHOV, LCN2, C19orf33, APOBEC3A, FAM3D, TNNT3, LYPD2, LSP1, ASS1, SERPINB2, GPR110, PDE4C, TCN1, TFF3, MUC20, TACSTD2, ELF3, GABRP, SLC16A9"	Club-like cells	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3239	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Tissue	Lung	30359271	Respir Res	FBXO19 promotes cell proliferation through activation of Akt in lung adenocarcinoma cells	NA
3240	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CTNNB1, C1orf56, CDC42SE1"	CTNNB1 monocytes	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3241	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRD1, KLRF1, GNLY, CTSW, KLRB1, KLRK1, NKG7, GZMH, SIGIRR, ZBTB16, RUNX3, APOL3, RORA, APBA2, WHDC1L1, DUSP2, GZMA"	T cells	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3242	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD8A	Cytotoxic T cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3243	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMB, GNLY, PRF1"	Cytotoxic T cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3244	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, SOX17, PTGS1"	Endothelial cells	Tissue	Lung	30554520	Am J Respir Crit Care Med	Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis	NA
3245	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	SOX4	Epithelial progenitors	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3246	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroblasts	"HBB, HBA2, HBA1, HBD, SNCA, SLC25A37, ALAS2, DCAF12, SLC25A39"	B-CELL 9	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3247	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, TCL1A, HLA-DOB, PNOC, KIAA0125, CD19, CR2, IGHG1, FCRL2, BLK, COCH, OSBPL10, IGHA1, TNFRSF17, ABCB4, BLNK, GLDC, MEF2C, IGHM, FAM30A, SPIB, BCL11A, GNG7, IGKC, CD72, MICAL3, BACH2, IGL, CCR9, QRSL1, DTNB, HLA-DQA1, SCN3A, SLC15A2"	B cells	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3248	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	NA	"CD8B, CD8A, PF4, PRR5, SF1, LIME1, DJB1, ARHGAP8, GZMM, SLC16A7, SFRS7, APBA2, C4orf15, LEPROTL1, ZFP36L2, GADD45A, MYST3, ZEB1, ZNF609, C12orf47, THUMPD1, VAMP2, ZNF91, ZNF22, TMC6, FLT3LG, CDKN2AIP, TSC22D3, TBCC, RBM3, ABT1, C19orf6, CAMLG, PPP1R2, AES"	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3249	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	NA	"CD209, CCL17, HSD11B1, CCL13, CCL22, PPFIBP2, NPR1, CD1B, VASH1, F13A1, CD1E, MMP12, FABP4, CLEC10A, SYT17, MS4A6A, CTNS, GUCA1A, CARD9, ABCG2, CD1A, PPARG, RAP1GAP, SLC7A8, GSTT1, PDXK, FZD2, CSF1R, HS3ST2, CH25H, LMAN2L, SLC26A6, BLVRB, NUDT9, PREP, TM7"	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3250	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"NRP1, TEK, DDR1, PROCR, FGFR4, FGFR3, FGFR2, KDR, CD151, S1PR1, TNFRSF12A, P1L1, OPTN, CDK7, SELENBP1"	Fibroblasts	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3251	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LAIR2, G0S2, VCAN, ASAH1, GNLY, S100A8, APOBEC3A, CTSW, S100A9, TSPAN14, MPT, FCN1, LIPA, NEAT1, IL2RB, ITGAM, CSF3R, DAG1, FCGR3A, HLA-DRA, FCGR1A, FCGA1B, FCGR1C, FCGR1B, CD33, CD300E, CD300LF, CD300LB, CXCR5, DOK1, CSF2RA, PLAUR, TREM1, ERBB2, LY"	Monocytes	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3252	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"LOC643313, GAGE2, ZNF747, XCL1, XCL2, AF107846, SLC30A5, SGMS1, MCM3AP, TBXA2R, CDC5L, LOC730096, FUT5, FGF18, MRC2, RP5-886K2.1, SPN, PSMD4, PRX, FZR1, ZNF205, AL080130, ZNF528, MAPRE3, BCL2, NM_017616, ARL6IP2, PDLIM4, TRPV6, LDB3, ADARB1, SMEK1, TCTN2,"	Natural killer (NK) cells	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3253	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	ITGA8	Fibroblasts	Tissue	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3254	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3255	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT5	Basal cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3256	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Dendritic cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3257	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, CLDN5"	Endothelial cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3258	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, SFRP2, PDGFRA"	Fibroblasts	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3259	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	MUC5B	Goblet cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3260	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	LYVE1	Lymphatic endothelial cells (LECs)	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3261	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	AIF1	Macrophages/dendritic cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3262	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSAB1	Mast cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3263	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3264	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	DES	Smooth muscle cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3265	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	CD45	Hematopoietic cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3266	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	ACTA2	Fibroblasts	Tissue	Lung	31299246	Chest	Alterations in Polyamine Metabolism in Patients With Lymphangioleiomyomatosis and Tuberous Sclerosis Complex 2-Deficient Cells	NA
3267	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"AMD1, ODC1, SRM, SMS"	Fibroblasts	Tissue	Lung	31299246	Chest	Alterations in Polyamine Metabolism in Patients With Lymphangioleiomyomatosis and Tuberous Sclerosis Complex 2-Deficient Cells	NA
3268	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"FAP, PDPN, MMP2, MMP11, PDGFRA, PDGFRL, CTSK"	Fibroblasts	Tissue	Lung	31299246	Chest	Alterations in Polyamine Metabolism in Patients With Lymphangioleiomyomatosis and Tuberous Sclerosis Complex 2-Deficient Cells	NA
3269	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"AMD1, ODC1, SRM, SMS"	Myofibroblasts	Tissue	Lung	31299246	Chest	Alterations in Polyamine Metabolism in Patients With Lymphangioleiomyomatosis and Tuberous Sclerosis Complex 2-Deficient Cells	NA
3270	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD16"	Intermediate monocytes	Tissue	Lung	31917836	Journal of Experimental medicine	Dynamics of Human monocytes and airway macrophages during healthy aging and after transplant	NA
3271	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CXCL10, CXCL11, CCL4, ISG15, ISG20"	Interstitial marcophages	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3272	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	NA	Alveolar cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3273	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	NA	Alveolar cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3274	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B lymphocytes	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3275	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT5	Basal cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3276	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Dendritic cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3277	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3278	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A2	Fibroblasts	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3279	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A2	Fibroblasts	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3280	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A2	Fibroblasts	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3281	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A2	Fibroblasts	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3282	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	SCGB3A1	Goblet cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3283	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	LYVE1	Lymphatic endothelial cells (LECs)	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3284	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSAB1	Mast cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3285	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCN1, IL1B, IL1R2"	Monocytes	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3286	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3287	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"ACTA2, DES, MYH11, PLN"	Smooth muscle cells	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3288	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T lymphocytes	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3289	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	PTPRC	Leukocytes	Tissue	Lung	30359271	Respir Res	FBXO17 promotes cell proliferation through activation of Akt in lung adenocarcinoma cells	NA
3290	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"C1QA, C1QB, C1QC, FCRGR3A, FTL, IFI27"	C1Q-macrophages	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3291	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	NA	"CCR7, NOS2, CD40"	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3292	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	PECAM1	Endothelial cells	Tissue	Lung	31619469	Eur Respir J	Transcriptional Characterisation of Human Lung Cells Identifies Novel Mesenchymal Lineage Markers	NA
3293	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DECORIN, COL1A1"	Matrix fibroblasts	Tissue	Lung	31619469	Eur Respir J	Transcriptional Characterisation of Human Lung Cells Identifies Novel Mesenchymal Lineage Markers	NA
3294	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, CD68"	Macrophages	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3295	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	AIF1	Macrophages	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3296	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	AIF1	Macrophages	Tissue	Lung	31405848	Ann Rheum Dis	Single-cell analysis reveals fibroblast heterogeneity and myofibroblasts in systemic sclerosis-associated interstitial lung disease	GSE 128169
3297	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"APOE, CD5L, MARCO"	Macrophages	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3298	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"ITGAX, CD33, VIM, LAMP2, LGALS3, MRC1, FCGR1A, FCGR1B, CCR1, CYBB, PECAM1, PILRA, TFRC, FCGR2A, CD163, FCGR3A, ISG15, HLA-DOA, HLA-DQA2, HLA-DQA1, HLA-DQB1"	Macrophages	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123919
3299	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3300	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3301	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3302	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3303	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	NA	"MARCO, CXCL5, SCG5, SULT1C2, MSR1, CTSK, PTGDS, COLEC12, GPC4, PCOLCE2, CHIT1, KAL1, CLEC5A, ME1, DSE2B, CCL7, FN1, CD163, GM2A, SCARB2, BCAT1, RAI14, COL8A2, APOE, CHI3L1, ATG7, CD84, FDX1, MS4A4A, SGMS1, EMP1, CYBB, CD68"	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3304	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	SPP1	Monocyte-derived macrophages	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3305	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"F13A1, FOLR2, SLC40A1, HMOX1"	MYELOID 10	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3306	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"EEF1A1, ALDH2, HLA-DQA2, RBP4, C1QC"	MYELOID 11	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3307	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"ISG15, FAM26F, IFIT3, IFIT2, RSAD2, IFIT1, C15orf48, APOBEC3A, CCL8"	MYELOID 4	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3308	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"FABP4, MCEMP1"	MYELOID 6	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3309	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CRIP1	MYELOID 8	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3310	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	DAB2	Macrophages	Tissue	Lung	32651166	Cancer Discov	The Disabled homolog 2 controls pro-metastatic activity of tumor-associated macrophages	GSE152674
3311	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"APOE, APOC1, FCGR3A, TREM2, CD68, MRC1"	Macrophages	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3312	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	FABP4	Alveolar marcophages	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3313	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"APOC1, APOE, ALOX5AP, INHBA, GPNMB"	Alveolar marcophages	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3314	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT5	Basal cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3315	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT5	Basal cells	Tissue	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3316	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"TM4SF1, ENG, ADGRL3, TCF4, EPAS1, CLEC14A, TMEM100, ACER2, LDB2, BMPR2, PLVAP, VWF, CLDN5, CDH5, LRG1, TC2N, AQP1, ABI3BP, RELN, CCL21, PPFIBP1, GNG11, MMRN1, KDR, PRX, CA4, EDNRB, ICAM2, SLCO2A1, KITLG, TMEM47, KIF26B, APLN, FLT1"	Endothelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3317	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"DCLK1, SOX9, RGS13, AVIL, POU2F3, LTC4S, SH2D6, PLCG2, SCGB3A1, BPIFB1, TFF3, LYPD2, ALDH1A1, AGR2, SCGB3A2, TPPP3, DNAH9, FAM183A, DNAH11, DYNLRB2, CCDC113, FOXJ1, TMEM212, KRT5, KRT14, KRT15, TP63, S100A2, ABCA3, CXCL17, NPW, SFTPD, S100G, SFTPA1, SFTPB"	Epithelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3318	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"CD3G, CD3E, CD8A, KLRD1, NKG7, S100A8, S100A9, CD68, CD14, TPSB2, IL1RL1, C1QB, PF4, MRC1, NAAA, IL18, GATA3, CCL17, CD86, JCHAIN, CD79A, BANK1, MS4A1, EBF1"	Immune cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3319	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"IFITM3, TAGLN, LTBP1, PPP1R14A, DCN, LGALS1, ACTA2, MYH11, TRPC6, PDE5A, ARHGAP42, COX4I2, PDZD2, SOX5, GUCY1A1, UPK1B, NKAIN4, MSLN, IGFBP5, IGFBP6, C4B, GPM6A, COL1A2, COL14A1, GPC3, COL1A1, COL3A1, ELN, MGP, MACF1, GSN, Hsd11b1, COL13A1, FHL1, GPX3, PL"	Mesenchymal cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
3320	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD2, CD3D, CD3E, IL7R"	Memory T cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123913
3321	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD33, CD14, CD163, DES"	Mesenchymal progenitors	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123923
3322	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CCR7	Activated dendritic cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3323	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A, MS4A1"	B cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3324	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PDGFRA, VCAN"	Fibroblasts	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3325	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSB2	Mast cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3326	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, VCAN, FCN1"	Monocytes	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3327	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"ACTA2, TAGLN"	Muscle cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3328	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCR1, NCAM1, CD160"	Natural killer (NK) cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3329	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	PROX1	Lymphocytes	Tissue	Lung	31935371	Cancer Cell	An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial cells Heterogeneity and Angiogenic Candidates.	GSE77199
3330	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"NPC2, SFTPC, CLDN18, PRSS1, CEACAM6, CEBPD, NAPSA, PGC, CXCL2, SFTPB, SFTPC, SFTPD, CLDN18, LAMP3, SLC34A2, IL8, PSA"	Alveolar epithelial type 2 cells	Cell line	Lung	32004478	Cell Stem Cell	Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors.	GSE137811
3331	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, MS4A1"	B cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123914
3332	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"ITGAX, CD33, VIM, CSF1R, FCGR2A, CD80, HLA-DOA, HLA-DQA2, HLA-DQA1, HLA-DQB1, CD40, HLA-DQA1, HLA-DOB"	Dendritic cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123917
3333	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"ITGAX, CD33, CSF1R, FCGR2A, CD79A, MS4A1, CD80, HLA-DOA, HLA-DQA2, HLA-DQA1, HLA-DQB1, CD40, HLA-DQA1, HLA-DOB"	Dendritic cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123918
3334	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, CD34"	Endothelial cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123909
3335	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CDH1, SOX9, SOX22"	Epithelial cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123905
3336	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"ISG15, SOX2, SOX9, CDH1, DES, PDGFRB, ACTA2, PDGFRA, CD34, CDH5, CD163,"	Fibroblasts	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123908
3337	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"CD33, VIM, KIT"	Mast cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123906
3338	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"S100A12, S100A8, S100A9, ITGAX, LILRB2, CD33, VIM, MRC1, FCGR1A, FCGR1B, CCR1, CYBB, CSF1R, FCGR2A, ITGAM, CD14, CD163"	Microglia/macrophages	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123904
3339	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A12, S100A8, S100A9, ITGAX, LILRB2, CD33, FCGR1A, FCGR1B, CCR1, CYBB, PECAM1, PILRA, TFRC, CSF1R, FCGR2A, ITGAM, CD14, CD163, FCGR3A, ISG15"	Monocytes	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123922
3340	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, GNLY, NCR3, KLRD1"	Natural killer (NK) cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123910
3341	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD2, CD3D, CD3E, CD3G, CD8A, IL7R"	Natural killer T (NKT) cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123911
3342	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"FGFBP2, SPON2, KLRF1, NKG7, PRF1, KLRD1"	Natural killer (NK) cells	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3343	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroendocrine cells	"GRP, CHGA, ASCL1, RPRM, BEX1, CALCA, SCGN, MIAT, SST, HEPACAM2, TMEM176B, TMEM176A, SCG5, UCHL1, SLC35D3, CHGB, DDC, SCG2, SCG3, APLP1, SYT1, INSM1, PROX1, CRMP1, PHGR1, KCNH6, DUSP26, PGAM2, SNAP25, CPLX2, RGS4, PCSK2, NRXN1, SYT4, CADPS, SCN3A, PTPRN, SRRM4, GFRA3, RUNDC3A, TCERG1L, KIF1A, ELAV, GRP, CHGA, ASCL1, RPRM, BEX1, CALCA, SCGN, MIAT, SST, HEPACAM2, TMEM176B, TMEM176A, SCG5, UCHL1, SLC35D3, CHGB, DDC, SCG2, SCG3, APLP1, SYT1, INSM1, PROX1, CRMP1, PHGR1, KCNH6, DUSP26, PGAM2, SNAP25, CPLX2, RGS4, PCSK2, NRXN1, SYT4, CADPS, SCN3A, PTPRN, S"	Neuroendocrine	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3344	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroendocrine cells	"ASCL1, SYP, CGRP, UCHL1, DLL3"	Neuroendocrine cells	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
3345	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	FCGR3B	Neutrophils	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3346	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT15, KRT5, S100A2, AQP3, MIR205HG, ZFP36, TACSTD2, SFN, KRT19, BHLHE40, JUNB, KLF5, CD9, F3, HCAR3, PERP, CSTA, HSPB1, JUN, HCAR2, FOS, CALML3, ADH7, IL33, CAPNS2, SERPINB5, PKP1, TP63, PNCK, RPLP1, LSP1, IGFBP3, ARL4D, KRT13, EGR1, GJB2, FOSB, DLK2, PLP2, LMNA, IGFBP2, MYC, ATF3, MPZL2, ZFP36L1, KRT15, KRT5, S100A2, AQP3, MIR205HG, ZFP36, TACSTD2, SFN, KRT19, BHLHE40, JUNB, KLF5, CD9, F3, HCAR3, PERP, CSTA, HSPB1, JUN, HCAR2, FOS, CALML3, ADH7, IL33, CAPNS2, SERPINB5, PKP1, TP63, PNCK, RPLP1, LSP1, IGFBP3, ARL4D, KRT13, EGR1, GJB2, FOSB, DLK2, PL"	Basal cells	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3347	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"CSF3R, CYP4F3, VNN3, FPRL1, KCNJ15, MME, IL8RA, IL8RB, FCGR3B, DYSF, FCAR, CEACAM3, HIST1H2BC, HPSE, CPPED1, CREB5, S100A12, TNFRSF10C, SLC22A4, TECPR2, SLC25A37, BST1, CRISPLD2, G0S2, SIGLEC5, CD93, MGAM, ALPL, FPR1, PDE4B, LILRB2"	Neutrophils	Tissue	Lung	31033233	Cancer Med	Dissecting intratumoral myeloid cell plasticity by single cell RNA-seq	NA
3348	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"S100A12, S100A8, S100A9, ITGAX, LILRB2, CD33, VIM, FCGR1A, FCGR1B, CCR1, CYBB, PECAM1, PILRA, TFRC, CSF1R, FCGR2A, ITGAM, CD14, CD163, ISG15"	Neutrophils	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123921
3349	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	FCGR3B	Neutrophils	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3350	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"APOBEC3A, S100A12, LILRA5, S100A8, CD14, IL1B"	Neutrophils	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3351	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"CD45, CD11b, Gr-1high"	Neutrophils	Tissue	Lung	33116313	Nature	Exuberant fibroblast activity compromises lung function via ADAMTS4	PRJNA612345
3352	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD16"	Nonclassical monocytes	Tissue	Lung	31917836	Journal of Experimental medicine	Dynamics of Human monocytes and airway macrophages during healthy aging and after transplant	NA
3353	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"MALAT1, NEAT1, MT-CO, MT-ND"	Oxphos monocytes	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3354	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FLT3, CD11C"	Dendritic cells	Tissue	Lung	32269339	Nature	A conserved dendritic-cell regulatory program limits antitumour immunity.	GSE131957
3355	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"Xcr1, lec9a, Cadm1"	DC1	Tissue	Lung	32269339	Nature	A conserved dendritic-cell regulatory program limits antitumour immunity.	GSE131957
3356	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"Itgam, Cd209a, Sirpa"	DC2	Tissue	Lung	32269339	Nature	A conserved dendritic-cell regulatory program limits antitumour immunity.	GSE131957
3357	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"Cd80, Cd86, Cd40, Relb, Cd83"	DC3	Tissue	Lung	32269339	Nature	A conserved dendritic-cell regulatory program limits antitumour immunity.	GSE131957
3358	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"TPSB2, CD79A, IGHG3, IGKC"	B cells	Tissue	Lung	32327726	Lab Invest	Identification of differentially expressed genes in lung adenocarcinoma cells using single-cell RNA sequencing not detected using traditional RNA sequencing and microarray	"GSE30219, GSE31210, GES3141, GSE37745, GSE50081, GSE68465"
3359	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FCN3, RAMP2"	Endothelial cells	Tissue	Lung	32327726	Lab Invest	Identification of differentially expressed genes in lung adenocarcinoma cells using single-cell RNA sequencing not detected using traditional RNA sequencing and microarray	"GSE30219, GSE31210, GES3141, GSE37745, GSE50081, GSE68465"
3360	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"C1R, COL1A1, DCN"	Fibroblasts	Tissue	Lung	32327726	Lab Invest	Identification of differentially expressed genes in lung adenocarcinoma cells using single-cell RNA sequencing not detected using traditional RNA sequencing and microarray	"GSE30219, GSE31210, GES3141, GSE37745, GSE50081, GSE68465"
3361	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"CPA3, TPSAB1"	Mast cells	Tissue	Lung	32327726	Lab Invest	Identification of differentially expressed genes in lung adenocarcinoma cells using single-cell RNA sequencing not detected using traditional RNA sequencing and microarray	"GSE30219, GSE31210, GES3141, GSE37745, GSE50081, GSE68465"
3362	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"C1QB, LYZ, CD68"	Myeloid cells	Tissue	Lung	32327726	Lab Invest	Identification of differentially expressed genes in lung adenocarcinoma cells using single-cell RNA sequencing not detected using traditional RNA sequencing and microarray	"GSE30219, GSE31210, GES3141, GSE37745, GSE50081, GSE68465"
3363	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RGS5, RERGL"	Pericytes	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3364	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"THY1, PDGFR_"	Pericytes	Tissue	Lung	31619469	Eur Respir J	Transcriptional Characterisation of Human Lung Cells Identifies Novel Mesenchymal Lineage Markers	NA
3365	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"SOX2, SOX9, CDH1, PDGFRB, ACTA2, PDGFRA, CD34, CDH5"	Pericytes	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123907
3366	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, IGHM, IGHG3, IGHA2, STMN1, AICDA, MKI67, BIRC5, LMO2, BCL2A1, GZMB, MS4A1, HLA-DRA, JCHAIN, IGHA1, IGHG1"	B cells	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3367	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, CLDN5, FLT1, RAMP2, RAMP3, RGCC, ADM, SELP, ACKR1, CCL21, LYVE1, TYROBP, C1QB, HSPG2, INSR, VWA1"	"Tip-like Ecs, Stalk-like Ecs, Lymphatic Ecs, EPCs, Tumor Ecs"	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3368	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, KRT19, CDH1, KRT18, AGER, SFTPC, LAMP3, SCGB1A1, FOXJ1, RFX2"	"AT1, AT2, Club, Ciliated"	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3369	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DCN, COL1A1, COL1A2, THY1, COL13A1, TCF21, ITGAB, CXCL14, NPNT, COL14A1, GSN, PI16, CYGB, PRRX1, ACTA2, MYH11, TAGLN, ACTG2, MYLK, CNN1, SYNPO2, CRYAB, DES, UPK3B, MSLN, CALB2, WT1, RGS5, CSPG4, ABCC9, KCNJ8, CYP1B1, APOD, FABP4, FABP5, PPARG"	Fibroblasts	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3370	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"KIT, MS4A2, GATA2"	Mast cells	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3371	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD68, MARCO, FCGR3A, CD16, LYZ, CTSS, FCN1, S100A8, S100A9, LYZ, VCAN, LGMN, CTSB, CD14, FCGR3A, MAFB, MAF, CX3CR1, ITGAM, CSF1R, MARCO, FABP4, MCEMP1, CD163, APOE, SEPP1, C1QA, C1QB, C1QC, CXCL8, IL1B, STMN1, MKI67, TOP2A, CDK1, CLEC10A, CD1C, CLEC4C, PTCRA, CCR7, LAMP3"	"Monocyte, Macrophagemo-lineage, Alveolar-Mac, Anti-inflammatory, Pro-inflammatory Cycling DC"	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3372	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCAM1, CD56, NKG7, GNLY, KLRD1"	Natural killer (NK) cells	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3373	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"OLIG1, OLIG2, MOG, CLDN11"	Oligodendrocytes	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3374	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, TRAC"	T lymphocytes	Tissue	Lung	32385277	Nat Commun	Single-cell RNA sequencing demonstrates the molecular and cellular reprogramming of metastatic lung adenocarcinoma	GSE131907
3375	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3376	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"TPPP3, KRT18"	Epithelial cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3377	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSB2	Mast cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3378	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CLEC9A"	Myeloid dendritic cells (mdcs)	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3379	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, GZMB, KLRD1, KLRC1, XCL1, KLRF1, EOMES"	Natural killer (NK) cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3380	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	IGHG4	B-CELL 3	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3381	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGHG3, IGHG1, IGHGP, IGHG2"	B-CELL 6	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3382	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGKC, JCHAIN"	Plasma cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3383	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGJ, MZB1, IGHG1"	B cells/antibody-secreting cells	Organoids	Lung	32413319	Cell	SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues	GSE148829
3384	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, APOE"	Myeloid cells	Organoids	Lung	32413319	Cell	SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues	GSE148829
3385	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"SDC1, SBP1, JCHAIN"	Plasma cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3386	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGHM, IGHA1, IGHG1, IGHG2, IGHG3, IGHG4"	Plasma cells	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123915
3387	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	IGHG4	Plasma cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3388	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IL3RA, CLEC4C"	Plasmacytoid dentritic cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3389	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	TCF4	Plasmacytoid dentritic cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3390	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3391	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GNLY, PRF1"	Cytotoxic CD8 T cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3392	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	FSCN1	Dendritic cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3393	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"GZMA, GZMK"	Effector CD8 T cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3394	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	MUC5B	Goblet cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3395	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	CPA3	Mast cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3396	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	FCN1	Monocytes	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3397	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CCR7	Naive CD4 T cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3398	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NCAM1	Natural killer (NK) cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3399	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"Trm, CD8A, ZNF683"	Resident memory CD8+ T cells	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3400	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, IGHM, IGLC3"	B cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6661
3401	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, FCN3, RAMP2"	Endothelial cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6658
3402	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"FOLR1, SFTPD, AGR3"	Epithelial cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6654
3403	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"C1R, COL1A1, DCN"	Fibroblasts	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6659
3404	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"CAP3, TPSAB1, TPSB2"	Mast cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6660
3405	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"C1QB, LYZ, CD68"	Myeloid cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6657
3406	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, CD22, TCL1A, CD83"	Naive B cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3407	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD38, TNFRSF17, IGHG1, IGHG4"	Plasma B cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3408	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3E, CD8A, CD8B"	CD8 T cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3409	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, TPSB2"	Mast cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3410	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, CD86"	Monocytes	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3411	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD163, MRC1"	Monocytes/macrophages	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3412	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"NCAM1, CD3E, NKG7"	Natural killer T (NKT) cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3413	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, EMCN, PROX1"	Endothelial cells	Tissue	Lung	32603599	Am J Respir Crit Care Med	Single Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell	GSE135853
3414	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT8, EPCAM, CDH1"	Epithelial cells	Tissue	Lung	32603599	Am J Respir Crit Care Med	Single Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell	GSE135854
3415	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"PTPRC, CD96, CD163"	Immune cells	Tissue	Lung	32603599	Am J Respir Crit Care Med	Single Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell	GSE135855
3416	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"MME, COL3A1, FN1"	Stromal cells	Tissue	Lung	32603599	Am J Respir Crit Care Med	Single Cell Transcriptomic Analysis Identifies a Unique Pulmonary Lymphangioleiomyomatosis Cell	GSE135852
3417	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Red cells	"HBA1, HBB"	Red blood cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3418	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA"	Regulatory T cells (Treg)	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3419	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79B, CD79A, MS4A1"	B cells	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3420	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, KDR"	Endothelial cells	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3421	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD2, CD3D, CD3E, IL7R"	Regulatory T cells (Treg)	Tissue	Lung	32042191	Nat Med	Regenerative lineages and immune-mediated pruning in lung cancer metastasis	GSE123916
3422	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"CD3D, CD3E, NKG7, CD8A, KLRD1"	Natural killer T (NKT) cells	Tissue	Lung	32671793	Protein Cell	Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients	NA
3423	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	FOXP3	Regulatory T cells (Treg)	Tissue	Lung	32479746	Cell	Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients	"GSE145926, GSE149443"
3424	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TNFRSF4, IL2RA, LTB, AC133644.2, TNFRSF18"	T-CELL 7	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3425	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EMP2, AGER, UPK3B, SPOCK2, CYP4B1, CAV1, RGCC, ICAM1"	ALVEOLAR 5	Tissue	Lung	29988129	Nat Med	Phenotype molding of stromal cells in the lung tumor microenvironment	NA
3426	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	NGFR	Basal cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3427	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CD31	Endothelial cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3428	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3429	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"SCGB3A2, SFTPB, CYB5A, VIM, LMO3, FMO2, AARD, MGST1, CFH, HOPX, TMSB4X, CFHR1, C16orf89, CYTL1, CFTR, HNMT, CXCL17, CLU, SSR4, C3, PTP4A1, SERPINF1, GDF15, RNU12, KLHL24, SPINK1, DSTN, SFTA2, RNASE1, PTP4A2, XBP1, STEAP4, IFITM3, ERP27, RAMP2, IFITM2, SLC4A4, PCDH20, SERPINI1, SCUBE2, HPGD, NDRG, SCGB3A2, SFTPB, CYB5A, VIM, LMO3, FMO2, AARD, MGST1, CFH, HOPX, TMSB4X, CFHR1, C16orf89, CYTL1, CFTR, HNMT, CXCL17, CLU, SSR4, C3, PTP4A1, SERPINF1, GDF15, RNU12, KLHL24, SPINK1, DSTN, SFTA2, RNASE1, PTP4A2, XBP1, STEAP4, IFITM3, ERP27, RAMP2, IFITM2, SLC"	Secretory progenitor	Organoids	Lung	32109386	Dev Cell	In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution	NA
3430	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CD34, FBN1, FBLN2, VIT"	Fibroblasts	Tissue	Lung	32832599	Sci Adv	Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis	GSE136831
3431	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sertoli cells	AZGP1	Sertoli cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3432	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sertoli cells	"AC020656.1, PIP, AZGP1, ZG16B, PRR4, PRb4, LYZ"	Sertoli cells	Tissue	Lung	32692579	Am J Respir Crit Care Med	Single cell reconstruction of Human basal cell diversity in normal and IPF lung	GSE143706 and GSE143705
3433	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	PECAM1	Endothelial cells	Organoids	Lung	32891189	Cell Stem Cell	Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells	"GSE149813, GSE149909"
3434	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Organoids	Lung	32891189	Cell Stem Cell	Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells	"GSE149813, GSE149909"
3435	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	Organoids	Lung	32891189	Cell Stem Cell	Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells	"GSE149813, GSE149909"
3436	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A1	Fibroblasts	Organoids	Lung	32891189	Cell Stem Cell	Organoids Model Transcriptional Hallmarks of Oncogenic KRAS Activation in Lung Epithelial Progenitor Cells	"GSE149813, GSE149909"
3437	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Lung	31221805	Eur Respir J	Proliferating SPP1/MERTK-expressing macrophages in idiopathic pulmonary fibrosis	GSE128033
3438	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD4, CD8A"	T cells	Tissue	Lung	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
3439	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC2"	T cells	Tissue	Lung	32327726	Lab Invest	Identification of differentially expressed genes in lung adenocarcinoma cells using single-cell RNA sequencing not detected using traditional RNA sequencing and microarray	"GSE30219, GSE31210, GES3141, GSE37745, GSE50081, GSE68465"
3440	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3441	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3442	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3443	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3444	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Lung	32398875	Nat Med	Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19	GSE145926
3445	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E"	T cells	Organoids	Lung	32413319	Cell	SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues	GSE148829
3446	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, TRAC, TRBC2"	T cells	Tissue	Lung	32549766	Int J Biol Sci	Ligand-receptor interaction atlas within and between tumor cells and T cells in lung adenocarcinoma	E-MTAB-6655
3447	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD69"	CD69+ T cells	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3448	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, GZMB"	CD4+ CTLs	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3449	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA"	Tregs	Tissue	Lung	32580738	Genome Biol	Single-cell transcriptome and antigen-immunoglobin analysis reveals the diversity of B cells in non-small cell lung cancer	NA
3450	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"IL18BP, CD3E, CD8A, PDCD1"	CD8 T cells	NA	Lung	32581358	Nature	IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy	GSE146609
3451	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CD31	Endothelial cells	Tissue	Lung	33116313	Nature	Exuberant fibroblast activity compromises lung function via ADAMTS4	PRJNA612345
3452	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	CD90	Fibroblasts	Tissue	Lung	33116313	Nature	Exuberant fibroblast activity compromises lung function via ADAMTS4	PRJNA612345
3453	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD45, CD11b, Gr-1low"	Monocytes	Tissue	Lung	33116313	Nature	Exuberant fibroblast activity compromises lung function via ADAMTS4	PRJNA612345
3454	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	AQP5	Alveolar stem cells	Tissue	Lung	33142113	Cell Stem Cell	Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2	EGAS00001004508
3455	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	"PDPN, AGER, CAV1"	AT1 cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3456	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Alveolar cells	"SFTPC, SFTPB, SFTPD, SFTPA1"	AT2 cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3457	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD79B, IGHG1, IGHA1, IGHM, CD19"	B cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3458	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, COL1A2, THY1, FAP"	Cancer associated fibroblasts (CAFS)	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3459	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1A, CD1C, CD207, HLA-DQ, CD103, CD123, CCL17, CCL22"	Dendritic cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3460	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, PECAM1"	Endothelial cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3461	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, TPSB2, CPA3, MS4A2, CLU"	Mast cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3462	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"FCGR3A, ITGAX, ITGAM, CD14, CSF1R, FCGR1A, CCR2, CX3CR1, CD68, CD163, MARCO, MSR1, MRC1, APOE, MCEMP1"	Monocytes/macrophages	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3463	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, CD2, CD27, CD28, TRAC, TRBC1, TRBC2, CD69"	T cells	Tissue	Lung	33144684	Oncogene	Single-cell RNA sequencing reveals heterogeneous tumor and immune cell populations in early-stage lung adenocarcinomas harboring EGFR mutations	"CRA001477, CRA001963"
3464	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"SFTPC, SFTPD, SFTPA"	Alveolar Epithelial-2	Tissue	Lung	33159078	Nat Commun	mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline.	NA
3465	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"HOPX, AGER, AQP4"	Alveolar Epithelial-1	Tissue	Lung	33159078	Nat Commun	mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline.	GSE139819
3466	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VCAM1, PDPN"	Endothelial cells	Tissue	Lung	33159078	Nat Commun	mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline.	GSE139819
3467	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT18, MSLN"	Epithelial cells	Tissue	Lung	33159078	Nat Commun	mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline.	GSE139819
3468	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"PRG4, OGN, MYH10"	Mesenchymal cells	Tissue	Lung	33159078	Nat Commun	mTORC1 activation in lung mesenchyme drives sex- and age-dependent pulmonary structure and function decline.	GSE139819
3469	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"SCGB1A1, SFTPC, FOXJ1, AGER"	Endothelial cells	Tissue	Lung	33180746	J Clin Invest	Age-determined expression of priming protease TMPRSS2 and localization of SARS-CoV-2 in lung epithelium	GSE160876
3470	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"SOX9, NKX2.1, ECAD"	Alveolar epithelial precursors	Organoids	Lung	33232663	Cell Stem Cell	Disease-associated astrocytes in Alzheimer disease and aging	GSE161264
3471	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT5	Basal cells	Organoids	Lung	33259798	Cell Stem Cell	Direct Exposure to SARS-CoV-2 and Cigarette Smoke Increases Infection Severity and Alters the Stem Cell-Derived Airway Repair Response.	GSE161089
3472	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"S100A8, S100A9, S100A12, VCAN, LYZ, CD14"	CD14 CD16 monocytes	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3473	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCGR3A, LST1, AIF1, CD52"	CD16 monocytes	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3474	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD45, CD11B, HLA-DR, HLA-DR, HLA-DP, HLA-DQ, MS4A6A, LGALS2, CD69"	HLA-DRhi monocytes	Tissue	Lung	33382972	Immunity	Distinct developmental pathways from blood monocytes generate Human lung macrophage diversity	NA
3475	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Medullary sinus	MARCO	Medullary sinus	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3476	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Valve	"CLDN11, ESAM, FOXC2, GATA2"	Valve	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3477	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3478	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CCL19	Blood Endothelial cells	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3479	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD34 SCS	"JAM2, CCL19"	CD34 SCS	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3480	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	ITGAX	Dendritic cells	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3481	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PDPN, CD31, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3482	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PDPN, CD31, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3483	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PDPN, CD31, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3484	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PDPN, CD31, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3485	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PDPN, CD31, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3486	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PDPN, CD31, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3487	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3488	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	JAM2	Stromal cells	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3489	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	PTPRC	Leukocytes	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3490	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	C1QA	Macrophages	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3491	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	MARCO	Medullary macrophages	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3492	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ACKR4, BMP4, CAV1, CD9, CDH13, EDN1, FABP4, FN1, GDF10, GJA4, KLF4, MMRN1, MMRN2, NTS, NUDT4"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3493	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"MAdCAM-1, BMP2, C2, CCL20, CD74, CLU, CSF1, IFNGR2, IL33, LTB, MMP9, RELB, VCAM1, ACKR1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3494	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	ACKR4	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3495	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"LYVE-1, C2, CD274, CLEC4G, CSF1, CSF2RB, F8, IL2RG, IL33, LTBP2, MARCO, TNC, TSPAN7, CLEC4M, ACKR1, CD209, high Claudin-5, STAB2, low PDPN, CCL21"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3496	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ANGPT2, CCL21, FLT4, ITIH3, KDR, LYVE1, MGLL, MRC1, NPR1, NPR2, PTX3, STAB2, high Claudin-5, CD36, PDPN, intermediate LYVE-1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
3497	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IL3RA, CLEC4C"	Plasmacytoid dentritic cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3498	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	PPBP	Platelet	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3499	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, CD79A, BCL6, RGS13, MEF2B, STMN1, ELL3, SERPI9"	GC B cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3500	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, CD79A, XBP1, IRF4, SEC11C, FKBP11, JCHAIN, PRDM1"	PBs	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3501	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, CD79A, TCL1A, IL4R, CCR7, IGHM, IGHD"	Na_ve B cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3502	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, CD79A, TBX21, FCRL5, ITGAX, NKG7, ZEB2, CR2-"	Activated B cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3503	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, CD19, CD79A, TNFRSF13B, CD27, CD24"	Resting memory B cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3504	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, LYZ, CST3, MS4A7"	Monocytes	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3505	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GZMB, GNLY, NKG7, NCAM1"	Natural killer (NK) cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3506	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3E	T cells	Tissue	Lymph node	31402260	Immunity	Single-Cell Survey of Human Lymphatics Unveils Marked Endothelial cells Heterogeneity and Mechanisms of Homing for Neutrophils	GSE124494
3507	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3D, CD3E, CD3G, IL7R, CD4"	CD4+ T cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3508	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3D, CD3E, CD3G, IL7R, CD8A"	CD8+ T cells	Tissue	Lymph node	32866963	Nature	Human germinal centres engage memory and naive B cells after influenza vaccination	GSE148633
3509	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"NGFR, AQP1, GFRA2, SLITRK6, L1CAM"	Neural crest stem cells	Tissue	Melanoma	30017245	Cell	Toward Minimal Residual Disease-Directed Therapy in Melanoma	GSE116237
3510	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"SLIT2, BGN, TGM2, TNC, CYR61"	Invasive cells	Tissue	Melanoma	30017245	Cell	Toward Minimal Residual Disease-Directed Therapy in Melanoma	GSE116237
3511	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"CD36, SLC7A8, DLX5, SGK233, SLC12A7"	SMC	Tissue	Melanoma	30017245	Cell	Toward Minimal Residual Disease-Directed Therapy in Melanoma	GSE116237
3512	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"MLPH, TRPM1, GPR143, SLC24A5, RAB27A"	Pigmented cells	Tissue	Melanoma	30017245	Cell	Toward Minimal Residual Disease-Directed Therapy in Melanoma	GSE116237
3513	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal ap-1	"FN1, IRF2, NFATC2, SOX9"	Mesenchymal ap-1	Cell line	Melanoma	32753671	Nature Cell Biology	Robust gene expression programs underlie recurrent cell states and phenotype switching in melanoma	"GSE115978, GSE72056"
3514	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ecretory mecs	"LALBA, CSN2"	Ecretory mecs	Tissue	Milk	33216249	J Mammary Gland Biol Neoplasia	"Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States:a Novel, Non-invasive Framework for Investigating Human Lactation Physiology"	GSE153889
3515	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	CD45	Hematopoietic cells	Tissue	Milk	33216249	J Mammary Gland Biol Neoplasia	"Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States:a Novel, Non-invasive Framework for Investigating Human Lactation Physiology"	GSE153889
3516	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Luminal cells	"KRT8, KRT18"	Luminal cells	Tissue	Milk	33216249	J Mammary Gland Biol Neoplasia	"Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States:a Novel, Non-invasive Framework for Investigating Human Lactation Physiology"	GSE153889
3517	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"LALBA, CSN2"	Alveolar epithelial cells	Tissue	Milk	33216249	J Mammary Gland Biol Neoplasia	"Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States:a Novel, Non-invasive Framework for Investigating Human Lactation Physiology"	GSE153889
3518	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT14	Basal cells	Tissue	Milk	33216249	J Mammary Gland Biol Neoplasia	"Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States:a Novel, Non-invasive Framework for Investigating Human Lactation Physiology"	GSE153889
3519	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"SSEA4, TRA-1-60, TRA-1-6081"	Stem cells	Tissue	Milk	33216249	J Mammary Gland Biol Neoplasia	"Single Cell RNA Sequencing of Human Milk-Derived Cells Reveals Sub-Populations of Mammary Epithelial Cells with Molecular Signatures of Progenitor and Mature States:a Novel, Non-invasive Framework for Investigating Human Lactation Physiology"	GSE153889
3520	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Conecting tubule	SLC12A3	Conecting tubule	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3521	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	CALB1	Cortical connecting tubule principal cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3522	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	UMOD	Distal tubule cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3523	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Distal tubule cells	DUSP9	Convoluted tubule cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3524	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intercalated cells	ATP6V0D2	Intercalated alpha cell	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3525	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intercalated cells	ATP6V1G3	Intercalated beta cell	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3526	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Limb cells	SLPI	Limb mesenchyme	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3527	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Limb cells	VCAM1	Descending thin limb cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3528	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Limb cells	UMOD	Thick ascending limb cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3529	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Osteogenic cells	"ALPL, BGLAP, POSTN"	Osteogenic cells	Cell line	Multiple tissues	30833796	Nat Genet	Osteogenesis depends on commissioning of a network of stem cell transcription factors that act as repressors of adipogenesis	"GSE79814, GSE35959, GSE27951, GSE15790, GSE73108, GSE44000, GSE48964, GSE29718, GSE15773, GSE9624, GSE15524, GSE39540, GSE12274, GSE113253"
3530	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Principal cells	FXYD4	Principal cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3531	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Transitioning principal cell/intercalated cells	SPINK1	Transitioning principal cell/intercalated cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3532	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular smooth muscle cell and mesangial	TAGLN	Vascular smooth muscle cell and mesangial	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3533	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD226	Monocyte-derived dendritic cells (modcs)	Tissue	Multiple tissues	28930664	Immunity	Aryl Hydrocarbon Receptor Controls Monocyte Differentiation into Dendritic Cells versus Macrophages	GSE103544
3534	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	ATP6V1G3	Collecting duct intercalated cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3535	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Collecting duct cells	AQP2	Collecting duct principal cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3536	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CCL5	Cytotoxic T cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3537	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Adipocytes	"PPARG, CEBPA, PLIN1"	Adipocytes	Cell line	Multiple tissues	30833796	Nat Genet	Osteogenesis depends on commissioning of a network of stem cell transcription factors that act as repressors of adipogenesis	"GSE79814, GSE35959, GSE27951, GSE15790, GSE73108, GSE44000, GSE48964, GSE29718, GSE15773, GSE9624, GSE15524, GSE39540, GSE12274, GSE113253"
3538	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	KRT8	Glomerular parietal epithelial cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3539	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	LAMP3	Dendritic cells	Tissue	Multiple tissues	31675496	Cell	Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma	NA
3540	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, FCGR3A"	Monocytes	Tissue	Multiple tissues	31675496	Cell	Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma	NA
3541	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	IL7R	Memory T cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3542	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"RPL32, FOS"	CD34 T cells	Tissue	Multiple tissues	32103181	Nature	Peripheral T cell expansion predicts tumour infiltration and clinical response	GSE139555
3543	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	NK cells	Tissue	Multiple tissues	32103181	Nature	Peripheral T cell expansion predicts tumour infiltration and clinical response	GSE139555
3544	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	RBP4	Parietal epithelial cells/loop of henle	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3545	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, TCL1A, IGHD, IGHM, FCER2, CXCR4, APLP2, PLPP5, IL4R"	Na_ve B	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3546	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD20, SMIM14, CD27, CR2, KLK1, ITM2C, DSE1L3, HES4, ABI3, CHI3L2"	MZB	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3547	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD21, TSC22D3, CRIP1, COCH, CD27, ITGB1, ANXA2, IGHA2"	CMBC	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3548	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD22, FGR, FCRL5, MPP6, FCRL3, MACROD2, HSPB1, CELC2D, CD72"	CD11c+ ABC	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3549	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD23, EGR3, CD83, DUSP2, EGR2, NR4A1, MYC, TNF, NFKBID, NFKBIA, CD69"	GCB	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3550	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD24, ISG15, IFI6, IFIT3, IFIT1, IFI44L, MX1, ISG20, IRF7, SAMD9L, IFI44"	ISG+ B	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3551	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD25, ARPC1B, CD1C, PCLAF, ZBTB32, STAC3, DUS2, PTPN1, CPNE5"	ZBTB32+ B	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3552	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"STMN1, HIST1H4C, HMGB2, TUBA1B, TUBB, TYMS, PCLAF, PCNA, MKI67, RRM2, DUT"	Cycling Natural killer T (NKT) cells	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3553	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LGALS2, VIM, CLEC4E, CRIP1, S100A8, S100A9, S100A12, RSE2, PLBD1, CLU, RETN, VCAN, MNDA, LYZ"	CD14+ Monocytes	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3554	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"HLA-DPB1, HLA-DPA1, CD74, HLA-DRB1, MS4A7, C1QA, C1QB, C1QC, FCGR3A, RHOC, SMIM25, CSF1R"	CD16+ Monocytes	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3555	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"FTL, SELENOP, HMOX1, FABP5, CD5L, APOE, APOC1, FABP4, NUPR1, MARCO, LGMN, SLC40A1, MRC1"	Macrophage	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3556	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"PPBP, PF4, GNG11, CAVIN2, NRGN, MYL9, SPARC, TUBB1, ITGA2B, PIG6B"	Megakaryocyte	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3557	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, PTTG1, HIST1H4C"	CDC1	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3558	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"HLA-DQA1, HLA-DQB1, CD1C, PPA1, FCER1A"	CDC2	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3559	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LILRA4, TCF4, CCDC50, IRF8, BCL11A, ITM2C, C12orf75, IRF7, SPIB"	PDC	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3560	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRF1, XCL1, XCL2, CCL3, KLRC1, CD160, IL2RB, GSTP1, FCER1G, TYROBP, CXCR6, GZMK"	Natural killer (NK) cells	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3561	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRF2, CX3CR1, LGALS1, FGFBP2, GNLY, GZMB, PTGDS, SPON2, PRF1, TYROBP, NKG7, FCGR3A, PRF1"	Natural killer (NK) cells	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3562	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	MZB1	Plasma cells	Tissue	Multiple tissues	32103181	Nature	Peripheral T cell expansion predicts tumour infiltration and clinical response	GSE139555
3563	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"UBE2C, TOP2A, CKS2, KP2, CDC20, UBE2S, TUBB4B, PTTG1, HIST1H4C, RRM2, PCLAF, DUT, MKI67"	PB	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3564	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"JCHAIN, DPEP1, IGHA2, IGKC"	PC	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3565	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"HERPUD1, SLC3A2, PSAT1, SLC1A5, EIF1, MTHFD2, WARS, EIF4EBP1, HSPA5"	C3-PC	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3566	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"IGLL5, IGLL1, SSR4, SDC1"	C4-PC	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3567	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Podocytes	NPHS2	Podocytes	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3568	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ESM1, NID2, HEVs, FBLN5, GJA5, PROX1, PDPN"	Endothelial cells	Tissue	Multiple tissues	32561858	Cell Research	A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling	NA
3569	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	SLC13A3	Proximal tubular cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3570	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	SLC22A8	Convoluted tubule	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3571	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	SLC22A7	Straight tubule	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3572	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proximal tubular cells	"MT1HL1, MT1H, GSTA1, CUBN, DPEP1, RBP4"	Proximal tubular cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3573	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3574	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	PLVAP	Endothelial cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3575	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	SERPINE2	Endothelial cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3576	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	DCN	Fibroblasts	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3577	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	EHD3	Glomerular capollary endothelial cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3578	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	LYZ	Monocytes	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3579	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	S100A8	Myeloid cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3580	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	HLA-DQB1	Myeloid cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3581	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3582	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	GNLY	Natural killer T (NKT) cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3583	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD8"	T cells	Tissue	Multiple tissues	31675496	Cell	Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma	NA
3584	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3E	T cells	Tissue	Multiple tissues	32103181	Nature	Peripheral T cell expansion predicts tumour infiltration and clinical response	GSE139555
3585	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"SELL, CCR7, SOCS3, MYC, LEF1, TSHZ2, MAL, NOSIP, TCF7"	CD4 Naive/CM	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3586	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"LTB, IL7R, CD52, TNFRSF4, AQP3, TIMP1"	CD4 Tem	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3587	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GPR183, LTB, CD40LG, CXCR5, MALAT1"	Tfh	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3588	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, RTKN2, CTLA4, FANK1, IL2RA, ICA1, ARID5B, CORO1B, GBP2"	Treg	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3589	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"SELL, CCR7, MYC, LEF1, TSHZ2, MAL, NOSIP, TCF7, RCAN3, SOCS3"	CD8 Na_ve/CM	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3590	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, CD8B, CXCR3, CD52, ITGA1"	CD8 Tem	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3591	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRG1, CXCR6, KLRD1, CCL4, CCL5, XCL2, GZMK, CMC1"	Trm	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3592	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CXCR5, CD8A, CD8B"	Tfc	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3593	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KLRB1, KLRG1, NCR3, SLC4A10, CXCR6, JAML, IL7R, CD160"	MAIT	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3594	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CX3CR1, LGALS1, FGFBP2, GNLY, GZMB, PTGDS, SPON2, PRF1, ZNF683, NKG7"	Tc	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3595	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRDC, TRGC2, CMC1, ITGAD"	Gamma delta T	Tissue	Multiple tissues	32351704	Cell Discov	Single-cell RNA sequencing reveals the heterogeneity of liver-resident immune cells in Human	GSE125188
3596	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, RGS5, AIF1"	T cells	Tissue	Multiple tissues	32561858	Cell Research	A pan-cancer blueprint of the heterogeneous tumor microenvironment revealed by single-cell profiling	NA
3597	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3E	Activated T cells	Tissue	Multiple tissues	32903321	Kidney Dis (Basel)	Localization of Cell Receptor-Related Genes of SARS-CoV-2 in the Kidney through Single-Cell Transcriptome Analysis	GSE131685 and GSE140989
3598	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8B, CD5, TENM1"	T cells	Tissue	Multiple tissues	33184181	Science	A Human cell atlas of fetal gene expression.	GSE156793
3599	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"RORC, KIT, SORCS1, JMY"	ILC 3 cells	Tissue	Multiple tissues	33184181	Science	A Human cell atlas of fetal gene expression.	GSE156793
3600	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CLEC7A, TLR7, CCL3, OLR1, SIGLEC10"	Microglia cells	Tissue	Multiple tissues	33184181	Science	A Human cell atlas of fetal gene expression.	GSE156793
3601	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"F13A1, COLEC12, RNASE1, LYVE1"	Perivascular macrophages	Tissue	Multiple tissues	33184181	Science	A Human cell atlas of fetal gene expression.	GSE156793
3602	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD5L, TIMD4, VCAM1"	Phagocytic macrophages	Tissue	Multiple tissues	33184181	Science	A Human cell atlas of fetal gene expression.	GSE156793
3603	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	F3	Adult colonic mucosal S2 fibroblasts	Organoids	Multiple tissues	33290721	Dev Cell	Single-Cell Sequencing of Developing Human Gut Reveals Transcriptional Links to Childhood Crohn Disease	NA
3604	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3	Innate-like T cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3605	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IFIT1, ISG15"	Interferon-responding T cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3606	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pdcs	"IRF7, LILRA4"	Pdcs	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3607	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Terminal effector T cells	TBX21	Terminal effector T cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3608	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Trm cells	"MYADM, CD69, XCL2, ITGA1, ZNF683, Hobit"	Trm cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3609	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CLEC9A	CDC1	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3610	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CLEC10A"	CDC2	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3611	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD8B	Cytotoxic T cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3612	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3613	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3614	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3615	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3616	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3617	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3618	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3619	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3620	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3621	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"CXCR4, CD29, CD56"	Satellite cells	Tissue	Muscle	32234209	eLife	Functionally heterogeneous Human satellite cells identified by single cell RNA sequencing	NA
3622	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CX3CR1, CH25H"	Microglia cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3623	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, CCR7, LEF1, SELL, IL7R, TCF7"	Naive T cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3624	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA, CD25"	Regulatory T cells (Treg)	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3625	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	TOX	Exhausted effector memory T cells	Tissue	Muscle	31708437	Cancer Cell	Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors	phs001915.v1.p1
3626	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Best4_otop2 cells	BAG1	Best4_otop2 cells	NA	NA	30814735	Nature	Colonic epithelial cell diversity in health and inflammatory bowel disease	GSE103239 and GSE81864
3627	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	E.absorptive	"PHGR1, KRT8, LGALS4, REN, SULT1E1, C4BPA, FABP1, OTOP3, CEACAM3, KIAA1239, MYOM1, MSLN, FXYD3, OTOP2, MYPN, CA4, BEST4, CTSE, EPCAM, SDCBP2, KRT18, S100A6, CLDN3, LGALS3, CLDN7, CPA2, CELA3A, RP11-416N2.3, CA7, RP11-116O18.1, LYPD8, CELA3B, RP11-10N16.2, CLDN4, TSPAN1, RP11-227H15.4, ADCY5,"	E.absorptive	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3628	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	E.absorptive_all	"PHGR1, LGALS4, RP11-116O18.1, RP11-567C2.1, DAO, FABP1, KRT8, C15orf48, MEP1B, PIGR, RP11-227H15.4, FXYD3, OTOP3, RP11-209E8.1, CELA3A, EPCAM, TMIGD1, CELA3B, CA2, GDPD2, KRT12, CLDN7, PLA2G12B, SLC30A10, CTC-490G23.2, KRT14, CYP2C9, GLRA4, SLC51A, RP11-59E19.1, HSPB3, LINC00974, SLC51B"	E.absorptive_all	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3629	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	F.crypt	"CCL7, CFD, SHISA3, SFTA1P, IGFBP7, APOE, HAPLN1, DCN, OMG, FBLN1, CP, CCL8, CCL13, ADAMDEC1, VCAM1, ABCA8, LUM, RBMS3-AS3, FMO2, CCL11, MFAP4, C1S, FABP4, CXCL6, COLEC11, TCEAL5, FNDC1, C1R, GGT5, TCF21, COL6A5, TDO2, SVEP1, SPOCK1, LINC01082, GRIA3, CPEB1, AC092652.1, MUSK, COL1A2, PTGDS, IL34,"	F.crypt	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3630	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	F.villus	"REEP2, CBLN2, GLP2R, VSTM2A, ENHO, NPY, COL4A5, CXCL14, NSG1, GS1-18A18.1, AGT, COL4A6, RP4-755D9.1, F3, AC003090.1, SEMA3A, FRZB, TRPA1, DHRS7C, DMKN, CHST1, POSTN, SOX6, PLAT, RP11-449D8.1, MMP1, TNC, RSPO2, FGF9, LGALS1, C1QTNF7, EDNRB, FAM150B, C10orf107, COL6A2, BMP4, SCUBE1, IGFBP7, WBS"	F.villus	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3631	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Follicle cells	"MS4A1, FCRL4, IGHD, RP5-887A10.1, VPREB3, CD74, CNR2, BANK1, PAX5, CD79A, CD19, SELL, CTA-250D10.23, TCL1A, FCRL1, IGHE, GYLTL1B, HLA-DRA, CXCR5, BLK, FCRLA, AC079767.4, RP11-297B17.3, FCER2, TLR10, FCRL3, RPS27, RPL21, RPL32, CD22, RPS6, CR2, RP11-693J15.5, RPL13A, TNFRSF13C, HLA-DPB1, RPL"	Follicle cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3632	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gc	"HTR3A, SERPI9, RP11-138I18.2, TCL1A, CD74, FCRL1, RP11-164H13.1, TCL6, AC096559.1, CD79A, BACH2, MS4A1, RP11-960L18.1, AC023590.1, FCRLA, FCRL3, ANK1, CTA-250D10.23, CD72, DTX1, CXCR5, RGS13, PAX5, CD22, AICDA, VPREB3, CD79B, P2RX5, IL21R, CD19, C7orf10, BLK, BFSP2, GPR18, GCSAM, AC079767."	Gc	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3633	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	I.immune	"P2RY13, MPEG1, CLEC9A, LILRB2, AC104699.1, IL5RA, FCGR1A, PLD4, CD180, CD209, MSR1, CD1E, CD86, LILRB5, LRRC25, LINC00582, CXorf21, CD300A, PNOC, CTA-384D8.34, IFNG-AS1, CCL3L1, FCRL5, TREM2, CD163, FCRLA, GPR34, AIM2, CAC2D3, CD300C, CD1C, DOK2, CCR2, FPR3, FAM92B, PGLYRP2, IGSF6, CD53, CD48"	I.immune	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3634	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"TFF3, KLK1, LGALS4, ITLN1, WFDC2, FCGBP, CLCA1, MUC2, LRRC26, RETNLB, RSE1, SPINK4, KRT18, GALNT8, REP15, LA16c-321D4.2, AC011523.2, SPINK1, KRT8, ZG16, TPSG1, AGR2, SERPI1, RP11-234B24.2, ST6GALC1, HEPACAM2, MB, KLK15, BEST2, TMEM61, LINC00238, S100A6, ANXA13, KLK3, LINC00261, RAP1GAP, KLK"	Immature goblet	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3635	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inflammatory cells	"NOS2, DDAH2, SMAD3, JAK2"	Inflamed crypt-top colonocytes	NA	NA	30814735	Nature	Colonic epithelial cell diversity in health and inflammatory bowel disease	GSE103239 and GSE81865
3636	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"MYCN, ALK"	Sensitive cells	Tissue	NA	31391581	Nature	BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells	GSE103084
3637	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"SOX2, SOX9"	Intermediate resistant cells	Tissue	NA	31391581	Nature	BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells	GSE103085
3638	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"PKIB, NEUROD4, PLP1, CER1, PTX3, INHBE, MYL1, SIX1, RPRM, BORIS, KCTD8, CEBPD, ARHGAP36, DACT1, RBM24, NEUROD1, NEUROG1, INSM1, KLHL1, SI2"	Resistant cells	Tissue	NA	31391581	Nature	BORIS promotes chromatin regulatory interactions in treatment-resistant cancer cells	GSE103086
3639	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	M cells	"SOX8, NTRK2, CCL23, MIA, RP11-161M6.2, SERPINF2, UBD, CCL20, NPB, CTSE, SDR16C5, AC026471.6, SPIB, TNFRSF11B, SLC2A6, TESC, TNFAIP2, PTAFR, POLD1, MSLN, CSRP2, GJB3, KCNE2, PTGS1, ALDOB, RNF207, TNFRSF11A, HS3ST1, AKR1C2, SPINK5, ATP11B, NOXO1, SDC4"	M cells	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3640	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	M.dcs	"HLA-DRA, HLA-DPB1, HLA-DPA1, HLA-DRB1, HLA-DQA1, CD74, HLA-DQB1, CD1E, LYZ, AIF1, CD207, CPVL, CFP, CST3, LST1, HLA-DMA, HLA-DRB5, CLEC10A, CAC2D3, FLT3, ASGR2, HLA-DMB, CD1B, SPI1, FCER1A, CLEC4F, HLA-DQB2, TREM1, IL1B, CD1C, ELAVL4, MNDA, CLEC9A, HCAR2, RP11-365O16.3, MS4A6A, HCAR3, MPEG1"	M.dcs	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3641	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	M.mast	"RP11-354E11.2, TPSAB1, SLC18A2, AC004791.2, HDC, KRT1, GCSAML, CTSG, CPA3, IL1RAPL1, GATA1, XXbac-BPG13B8.10, MS4A2, CMA1, GATA2, SIGLEC8, ADCYAP1, AMHR2, SVOPL, C1orf186, HPGDS, MAOB, NTRK1, CALB2, CDK15, RP11-501J20.5, KIT, RGS13, VWA5A, LTC4S, SLC45A3, TAL1, IL13, TPSD1, RP11-557H15.4"	M.mast	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3642	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	M.myeloid	"IGSF6, P2RY13, CLEC10A, CLEC9A, VSIG4, LILRB2, FCGR1A, LILRB5, MS4A4A, CD163, CSF1R, MNDA, LRRC25, FPR3, MPEG1, ATP6V0D2, TIFAB, MSR1, TREM2, MS4A6A, MS4A7, ASGR2, RP11-365O16.3, PLA2G7, CD209, SDS, CD1E, CLEC4A, GPR84, ADORA3, CD300C, RP5-899E9.1, FCGR1B, CPVL, RP11-556E13.1, CRHBP, HK3, OL"	M.myeloid	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3643	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Colonocytes	"OTOP2, BEST4"	Mature colonocytes	NA	NA	30814735	Nature	Colonic epithelial cell diversity in health and inflammatory bowel disease	GSE103239 and GSE81861
3644	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Colonocytes	GUCA2B	Mature colonocytes	NA	NA	30814735	Nature	Colonic epithelial cell diversity in health and inflammatory bowel disease	GSE103239 and GSE81862
3645	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Colonocytes	"SPIB, HES4"	Mature colonocytes	NA	NA	30814735	Nature	Colonic epithelial cell diversity in health and inflammatory bowel disease	GSE103239 and GSE81863
3646	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microvascular	"PLVAP, IGFBP7, GNG11, RAMP3, VWF, IFITM3, EXOC3L2, RAMP2, GSN, CRIP2, ESAM, CD36, ECSCR, FABP5, SLC14A1, SPARCL1, TM4SF18, RP11-536O18.2, TMEM88, EGFL7, ELTD1, SPARC, SDPR, RBP5, FLT1, KDR, FAM110D, VWA1, CLEC14A, PODXL, CD320, BAALC, SNCG, FAM167B, AC011526.1, HSPA12B, EMCN, CXorf36, KANK3, C"	Microvascular	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3647	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mt-hi	"MALAT1, CCL5, IL32, KLRC1, GNLY, CD3D, RUNX3, BCL11B, TRBC2, SCML4, TRAC, PLEKHF1, RP11-94L15.2, KLF12, GIMAP7, GZMA, PRKCQ-AS1, PRF1, RP11-277L2.4, MYO1F, ZNF430, ARHGEF3, CD52, ACAP1, EVL, TRGC2, CD7, CLEC2D, CD247, AHR, CD8B, ANKRD44, OXD1, CXCR6, MYO1G, KLRC2, STK10, INPP5D, LRBA, IL7R, PYH"	Mt-hi	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3648	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myogenic module	"MYOZ2, CASQ2, MYOD1, KLH41"	Myogenic module	NA	NA	32515350	eLife	Elucidating the fundamental fibrotic processes driving abdominal adhesion formation	NA
3649	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Post-capillary venules	"DARC, CLDN5, ZNF385D, SELP, MADCAM1, LINC01013, IL33, GALNT15, RAB3C, APLNR, FAM155A, TLL1, VWF, PLA1A, RAMP3, ECSCR, SELE, CYP1B1, VEGFC, JAM2, RASSF9, CPE, ERG, IGFBP7, AC011526.1, EGFL7, PLVAP, MEOX2, CLU, GPR126, RAMP2, BCL6B, KRT222, CDH5, SNCG, FAM167B, MEOX1, HHEX, PALMD, LMO2, GNG11, MYC"	Post-capillary venules	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3650	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, MKI67"	Proliferative T cells	Tissue	NA	31675496	Cell	Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma	NA
3651	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rspo3+	"LUM, DCN, IGFBP7, OGN, GREM2, CFD, RSPO3, FBLN1, C7, CHODL, COL1A2, C1S, PRELP, ASPN, RGMA, C1R, CCDC80, C3, EFEMP1, CCL11, MFAP4, CFH, SERPINF1, GUCY1A3, MGP, SOD3, CXCL12, CXCL6, PLAC9, ANGPTL1, GSN, PTGER1, CCL21, CCL19, ADH1B, TCF21, IFITM3, SLIT3, MFAP5, COL14A1, SERPING1, CTSK, THY1, PTGDS, B"	Rspo3+	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3652	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"LGALS4, TFF3, PIGR, KRT18, KLK1, EPCAM, AGR2, ITLN1, C15orf48, TMSB10, RPS2, C17orf76-AS1, RPL36A, GPX2, FCGBP, MT1G, R18S5, SPINK4, STARD10, TERT, SMIM22, CLCA1, LRRC26, RETNLB, WFDC2, LINC00238, SPINK1, RP11-66B24.2, RP11-392E22.12, PRDX5, NBEAL1, MUC2, RP4-740C4.6, CLDN7, RPL37A, RPL27A"	Secretory ta	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3653	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3G, CD4, IL7R"	T helper cells	Organoids	NA	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
3654	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3G, CA10, IL26, CD3E, CHRM3-AS2, SIRPG, RP11-291B21.2, CD3D, CD6, KLRC2, AC092580.4, CD247, THEMIS, TRGC1, CD2, TRBC2, TRAV4, TRGC2, GPR171, CPA5, CD40LG, CD96, TIGIT, CD8A, DTHD1, LCK, CXCR6, FASLG, RGL4, UBASH3A, KLRB1, CD7, GZMM, TRAC, LINC00402, IL22, ICOS, IL18RAP, CD160, TMIGD2, KIR3DL2"	T cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3655	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ta 1	"LGALS4, C15orf48, PIGR, EPCAM, MT1G, LGALS3, PPP1R1B, GPX2, KRT18, AGR2, SELENBP1, TXN, COX5B, CLDN7, HMGCS2, KRTCAP3, KCNE2, TSPAN8, FAM84A, ATP5G1, MT1E, MGST1, LEFTY1, S100A14, ATP2C2, ATP5G3, CLDN3, PRAC1, RP5-1092A3.4, C10orf99, PRDX5, ELF3, TMSB10, CHCHD10, NOX1, TRABD2A, STARD10, MUC4"	Ta 1	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3656	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ta 2	"LGALS4, C15orf48, EPCAM, PIGR, LGALS3, KRT8, AGR2, TXN, S100A6, KRT18, CLDN7, CD9, ATP5G3, COX5B, UQCRQ, MGST1, ATP5G1, FXYD3, RPS2, COX7C, RPS24, MT1G, COX6C, TSPAN8, COX7A2, COX5A, SELENBP1, CLDN3, SRI, GPX2, TMSB10, TMEM141, S100A14, HMGCS2, S100A10, CA2, C10orf99, CHCHD10, SMIM22, RPL10A, U"	Ta 2	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3657	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tuft cells	"HTR3E, GNG13, SH2D7, SH2D6, TRPM5, HTR3C, AZGP1, TNNI1, KRT18, POU2F3, BMX, OGDHL, IGSF21, NCMAP, TAS1R3, GFI1B, B4GALNT4, PSTPIP2, LRMP, CAMP, RP11-93B14.5, PTGS1, PRSS22, KLK11, KRT8, TREH, KRT7, IL17RB, HCK, KLHDC7A, HMX2, CCSER1, HPGDS, ALOX5, 7SK, RP11-498E2.9, TMEM198, AFAP1L2, V2, NRG2"	Tuft cells	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3658	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Undifferentiated epithelia	"RNF186, CXCL1, CXCL2, CXCL3, HSPA6, ITGB8"	Undifferentiated epithelia	NA	NA	30814735	Nature	Colonic epithelial cell diversity in health and inflammatory bowel disease	GSE103239 and GSE81866
3659	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocyte-like cells	"IGFBP5, ADM, BNIP3, INSIG2, VEGFA, HILPDA, SLC2A1, GAPDH, EIF1, NDUFA4L2"	Astrocyte-like cells	Organoids	NA	32485136	Neuron	CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes	NA
3660	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"AIF1, C1QC, TYROBP, MS4A6A, HLA-DRA, C1QA, C1QB, HLA-DQA1, LYZ, TUBA1B, DSE1L3, HLA-DPB1, FCER1G, HLA-DPA1, HLA-DRB1, LST1, HLA-DRB5, VSIG4, MS4A7, IGSF6, HLA-DMA, MS4A4A, IL1B, SCN4B, PLA2G7, LILRB4, CPVL, HLA-DMB, FCGR1A, SPI1, FAM26F, P2RY6, OLR1, SDS, STMN1, HLA-DQB1, RSE6, CD74, IL1RN, CD"	Cycling monocytes	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3661	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cycling T cells	"CLSPN, CD3D, PKMYT1, CCL5, ASF1B, TYMS, CDCA2, CD3E, MTFR2, CDC45, RRM2, UHRF1, DEPDC1B, E2F1, CD2, NUSAP1, CORO1A, MLF1IP, GZMA, DSCC1, KIAA0101, EVL, SKA1, SKA3, CKAP2L, HELLS, LCK, C16orf59, NRM, GZMB, CDCA5, SGOL2, TK1, ARHGAP11A, DLGAP5, FBXO5, CDC6, RAD51, TRDC, TRGC1, CEP55, NDC80, NKG7, CE"	Cycling T cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3662	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3G, CD8A, CD8B"	Cytotoxic T cells	Organoids	NA	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
3663	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MS4A1"	B cells	Organoids	NA	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
3664	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CD3E, CD247, NCAM1, NKG7, TRDC"	Natural killer (NK) cells	Organoids	NA	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
3665	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"IDO1, DSE1L3, HLA-DQA1, CLEC9A, LYZ, CPVL, CTD-2319I12.1, HLA-DPB1, HLA-DRA, HLA-DPA1, BATF3, HLA-DRB1, LGALS2, HLA-DRB5, HLA-DQB1, FLT3, WDFY4, HLA-DQB2, CD74, SERPINF2, C1orf54, SPI1, MPEG1, TNNI2, HLA-DQA2, TLR10, HLA-DMA, CLNK, IRF8, HLA-DMB, TACSTD2, CD83, FBXO27, CST3, S100B, SLAMF8"	Dendritric cells (DC) 1	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3666	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"HLA-DRA, HLA-DPB1, HLA-DRB1, HLA-DPA1, HLA-DQA1, CD74, CD1E, HLA-DQB1, CD207, CLEC10A, AIF1, LYZ, TYROBP, ASGR2, CLEC4F, FCER1A, LST1, IL1B, HLA-DMA, CPVL, CFP, CST3, CD1C, HLA-DMB, FCER1G, HLA-DRB5, CD1B, HLA-DQB2, SIRPB1, MS4A6A, MNDA, AMICA1, CAC2D3, SPI1, PLD4, RP11-365O16.3, IGSF6, OLR1"	Dendritric cells (DC) 2	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3667	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"SMIM22, PITX2, EDN2, RP11-349K16.1, C1orf116, LGALS4, BEST2, CYP2B6, RP11-395P17.11, CTC-490G23.2, SLC17A4, CKMT1A, CAPN8, RP11-747D18.1, RBBP8NL, CKMT1B, FAM3D, NXPE2, RP11-680F8.1, CTD-2547H18.1, PLA2G10, STX19, TMEM82, C10orf99, CELA3A, TMEM72, SCGB2A1, B4GALNT2, AOC1, MIR194-2, SL"	Epithelial cells	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3668	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"ITLN1, IL1R2"	Goblet cells	NA	NA	30814735	Nature	Colonic epithelial cell diversity in health and inflammatory bowel disease	GSE103239 and GSE81866
3669	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"PDCD1, LAG3, HAVCR2"	Exhausted T cells	Organoids	NA	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
3670	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ECSCR, AC011526.1, FAM110D, RAMP3, VWF, CYYR1, SNCG, CDH5, MYCT1, TM4SF18, CD34, SOX17, SOX18, ELTD1, AC116035.1, BAALC, CXorf36, ERG, MMRN2, PLVAP, APLNR, KRT222, HSPA12B, PALMD, LCN6, KANK3, CLDN5, BCL6B, FAM167B, KDR, EGFL7, ZNF385D, JAM2, NPR1, SOX7, ESAM, CLEC1A, SLC14A1, TEK, EXOC3L2, NOV"	Endothelial cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3671	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SPOCK1, SFTA1P, PTGFR, ELANE, HSD11B1, BMPER, TCF21, PIEZO2, MMP2, MFAP4, FBLN1, STMN2, DPT, PAMR1, GSTM5, CYGB, SCARA5, VCAN, HAPLN1, PRR16, ACSS3, CCDC80, TMEM119, CLMP, RP11-7O14.1, CTC-276P9.1, SYNDIG1, CP, LINC01082, COL3A1, COL6A2, CCL7, GPC6, OMG, CHL1-AS2, EMID1, RP11-514D23.3, CTSK"	Fibroblasts	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3672	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"FAM110D, ZNF385D, EHD2, TEK, NKX2-3, LIFR, NNMT, IL34, CTC-276P9.1, FAM107A, LINC01082, FOXF1, FKBP10, IGFBP7, RBP5, CALD1, MMP2, CP, TMTC1, RBMS3, ANGPTL1, HTRA3, CDH5, SPARC, KDR, LPHN3, AC011526.1, TDO2, NKD2, PRR16, ANGPTL2, ELANE, PTN, HSPA12B, COL15A1, RSPO3, KRT222, CYYR1, PAMR1, CFHR3"	Stromal cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3673	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"GENPF, ASPM, PTTG1, HMGN2, NUSAP1, HMGB1, BIRC5, NUF2, PBK, PLK1"	Imm astrocyte a	Organoids	NA	32485136	Neuron	CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes	NA
3674	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"BRCA2, RRM2, PBK, NUSAP1, MK167, RFC3, CENPU, CHEK1, ORC6, HIST1H4C"	Imm astrocyte b	Organoids	NA	32485136	Neuron	CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes	NA
3675	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"FCRL5, AC104699.1, LINC00582, FAM92B, AC104024.1, CD79A, IGLL1, TNFRSF17, AMPD1, DUSP26, GPRC5D, NLRP7, POU2AF1, AL928768.3, CCR10, OSTN-AS1, FCRLA, RP11-301L8.2, HBD, CDH15, UBE2QL1, AL109761.5, RP5-887A10.1, RP11-290F5.1, AC096579.13, PNOC, MS4A1, WNT10A, TNFRSF13B, RP11-1070N10.3"	B cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3676	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	"OTOP3, BEST4, CA7, PHGR1, OTOP2, MSLN, SULT1E1, KRT8, REN, CTSE, SPIB, CEACAM3, MYOM1, C4BPA, LGALS4, ADCY5, RP11-416N2.3, FABP1, FXYD3, MT1G, RP11-771K4.1, SERPINB5, KRT18, MEIS1, PCSK1N, DMBT1, GFI1B, NEURL, CLGN, LGALS3, KRT19, CA4, CLDN3, S100A6, EPCAM, CLDN7, MT2A, HES4, AC069277.2, MT1E"	Best4 enterocytes	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3677	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"RPS27, RPL13, IL32, RPL32, TRBC2, TRAC, S100A4, IL22, IL17A, CD3D, RPLP1, ANXA1, RPS6, TMSB4X, CD69, CD40LG, CD52, RP11-403A21.2, EEF1A1, RPL41, MYBL1, CSF2, EIF1, RPS2, AP000783.1, LTB, CD2, ARHGDIB, IL23R, CD3E, RPS4X, RPS27A, IL2, RPL10, RPLP2, IL7R, SRGN, ULBP2, RPL21, CLIP4, LINC00892, PRKC"	CD4 activated fos-hi	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3678	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"RPL32, RPS19, RPLP1, RPL10, RPL21, RPL13, RPL41, EEF1A1, TMSB4X, IL32, RPS27, RPS2, S100A4, ANXA1, TRAC, RPS6, RPS4X, CD3D, RPL15, CD52, RPS27A, TRBC2, LTB, RPL7, ARHGDIB, IL22, RPS15A, RPS12, RPS18, IL7R, RPS14, IL2, RP11-664D1.1, RPL11, RPS3A, CD3E, RPS25, RPLP2, RPL6, CXCR4, CD2, RPL3, KLRB1, R"	CD4 activated fos-lo	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3679	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"RPL13, RPL10, TMSB4X, RPL21, RPS18, RPS3, RP11-664D1.1, RPS19, RPL41, RPL32, RPS2, RPLP1, RPL13A, RPL3, CCR7, LINC00402, LEF1, RPS4X, MDS2, RPS27, EEF1A1, RPS27A, RPS6, RPL27A, RPS14, TRBC2, RPS12, TRAC, CD52, C1orf228, CD3D, RPS3A, LINC00861, SELL, RPL19, RPL11, ARHGDIB, LTB, RPL18A, RPS25, RP"	CD4 memory T cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3680	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"RP5-1028K7.2, PDCD1, PVALB, CXCR5, C1orf228, RP11-265P11.2, TRBC2, ARHGDIB, RP11-279F6.3, TOX2, CD3D, CD200, NFATC1, TIGIT, CHI3L2, TRAC, SRGN, LTB, JAK3, TOX, RP11-455F5.5, TBC1D4, PTPN7, CD40LG, MAL, PYHIN1, BCL11B, ITM2A, ICOS, SIRPG, TCF7, FBLN7, PASK, BTLA, CD52, LINC00892, NMB, CCR7, BA"	CD4 pd1 double postive cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3681	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, CTSG, AC004791.2, XXbac-BPG13B8.10, HDC, SLC18A2, ADCYAP1, CMA1, RP11-354E11.2, KRT1, GATA2, CPA3, IL1RAPL1, RGS13, HPGDS, SIGLEC8, GCSAML, C1orf186, CALB2, RP11-557H15.4, MS4A2, AMHR2, MAOB, IL1RL1, IL13, VWA5A, LTC4S, SLC45A3, GATA1, KIT, MALAT1, TPSD1, FCER1A, TAL1, SVOPL, H3F3B"	CD69 mast cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3682	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCL5, KLRC2, TRDC, KIR3DL2, NCR2, CD160, SH2D1B, TRGC2, IL32, TRGC1, CD7, NKG7, HOPX, RPS18, TMIGD2, FAM179A, CD52, CD244, GZMB, PRF1, AC017104.6, KLRD1, RPS19, KRT81, KRT86, CD3D, XCL1, FASLG, TMSB4X, GNLY, ZNF683, GZMA, XCL2, CA10, RP11-47L3.1, CLIC3, AC092580.4, TXK, CTSW, PLEKHF1, FBXO2, CD9"	CD8 iels	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3683	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"IL32, CD52, IL26, CD3D, S100A4, CA10, TRAC, B3GALT2, TRBC2, CXCR6, IL17A, LTB, CD2, CCL20, ACTB, CD3E, ARHGDIB, CD70, IL22, KLRB1, CD5, IL4I1, AC092580.4, SLAMF1, TNFRSF25, IL12RB1, SPOCK2, LRRN3, GPR34, TSPAN5, CD6, CD40LG, GZMA, CD69, CORO1A, LCK, LINC00892, CD3G, TMIGD2, HCST, AMICA1, PDCD1, C"	CD8 IL17 cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3684	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCL5, RPL10, CD8A, GZMK, GZMH, RP11-291B21.2, CD8B, NKG7, IL32, B2M, TMSB4X, CRTAM, FCRL6, EOMES, GZMA, ZNF683, IFNG, CD3D, CCL4, AC131056.3, GZMB, RPS2, TRBC2, SAMD3, DTHD1, RPS27, JAKMIP1, RPS19, TRAC, SH2D1A, DUSP2, CST7, CD52, XCL1, RPL13, ARHGDIB, CXCR4, CCR5, CD2, CTSW, PRF1, TNFSF9, CD3E, T"	CD8 lp	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3685	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"TCL6, SERPI9, CD79A, PAX5, RP11-138I18.2, AL928768.3, MZB1, DTX1, C12orf77, RP11-164H13.1, AC096559.1, DERL3, NUGGC, EAF2, CD74, FAM72D, TCL1A, ANKLE1, HTR3A, TTK, SHCBP1, P2RX5, EME1, MCM10, IGKC, CAMP, UBE2J1, GCSAM, KREMEN2, CTA-250D10.23, BACH2, NEIL3, LINC00877, NUF2, CXCR5, NLRP7, DEP"	Cycling B cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3686	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amplifying cells	"LGALS4, SPC25, CKAP2L, SKA1, TICRR, CENPA, NCAPG, CDC25C, PBK, UBE2C, C17orf53, BIRC5, KIF18B, TPX2, RRM2, C15orf48, AUNIP, AURKB, HJURP, NCAPH, CC2, ASPM, AP000251.3, PKMYT1, FAM64A, PIGR, KIF4A, CCNF, KIF20A, TOP2A, SGOL1, AGR2, TK1, PLK1, CDC20, HIST1H2AJ, KIF15, NEK2, MELK, KIF2C, NUSAP1, CD"	Cycling transit amplifying cells	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3687	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"FCN1, AIF1, HLA-DRA, LYZ, S100A8, HLA-DRB1, LST1, TYROBP, FPR1, IL1B, TREM1, CD74, S100A9, FCER1G, HLA-DPA1, HLA-DPB1, LILRA2, LILRA3, CFP, TIFAB, OLR1, LILRB2, HLA-DQB1, EREG, CSTA, CSF3R, CLEC10A, CST3, IL1RN, HLA-DRB5, MS4A6A, HLA-DQA1, LILRA5, SRGN, CLEC12A, HLA-DMA, C5AR1, SPI1, CD300C, I"	Inflammatory monocytes	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3688	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	"FABP1, PHGR1, LGALS4, FXYD3, KRT8, CA2, C15orf48, CLDN7, SLC26A3, PIGR, TSPAN1, PDZK1, LGALS3, C19orf33, SLC26A2, KRT18, KRT20, MS4A12, SLC51B, S100A6, KRT19, TMEM54, EPCAM, CASP16, MALL, CES2, SMIM22, CDHR5, CTD-2228K2.5, FAM151A, CA1, CEACAM7, PLAC8, MISP, SDCBP2, GCNT3, PRSS3, DAO, GUCA2A"	Immature enterocytes	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3689	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PLVAP, CLDN5, SEMA3G, RBP7, MMRN2, GPIHBP1, GJA4, TMEM88, FCN3, SOX17, RAMP2, GNG11, COX4I2, RP11-251M1.1, RAMP3, EGFL7, AIF1L, ESAM, C1QTNF9, INHBB, STC1, CYYR1, JAM2, ECSCR, SLC14A1, CD320, FLT1, CRIP2, CLEC14A, TM4SF18, CD34, VWF, HIGD1B, FABP5, LCN6, ENPP2, CD36, FAM124B, AC011526.1, ELTD1"	Endothelial cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3690	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	"AQP8, GUCA2A, PLAC8, CA4, CEACAM5, TSPAN1, IFI27, GUCA2B, PHGR1, FABP1, FXYD3, PRAP1, IL32, SLC26A3, CEACAM7, PIGR, SDCBP2, C19orf33, EPCAM, C15orf48, CLDN7, LYPD8, CTD-2228K2.5, SMIM22, LGALS4, CLCA4, KRT20, S100A6, MISP, CA2, CEACAM1, KRT8, TRIM31, CFDP1, CLDN3, PRSS3, ITM2C, KIAA1239, MS4A"	Enterocytes	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3691	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enteroendocrine cells	"CRYBA2, SCGN, FEV, CHGA, VWA5B2, GCG, SCG5, PCSK1N, TPH1, TTR, NKX2-2, PYY, RTN1, CAC1A, CADPS, CXXC4, SLC29A4, ARX, ISL1, NEUROD1, CHGB, PELI3, RP11-279F6.1, MLXIPL, RP11-17M24.1, ETV1, GNG4, CYP2W1, RAB3B, MS4A8, RAMP1, CES1, RAB26, CPE, SCT, KIF12, DJC12, INSL5, KIAA1456, HOXB8, NPW, C6orf141"	Enteroendocrine cells	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3692	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"ZG16, MUC2, TFF1, TFF3, PHGR1, IFI27, FCGBP, TBX10, FXYD3, AC093642.3, TSPAN1, S100P, LINC01022, GSN, LYPD8, CEACAM5, GPR153, FFAR4, FAM177B, RP11-363E7.4, MUC1, SYT7, TFF2, FER1L6, REP15, KRT18, CLDN4, STXBP5-AS1, FAM3D, KRT8, LGALS4, AC009133.21, MUC13, SMIM6, CLDN7, KREMEN2, IL3RA, ENTPD8"	Goblet cells	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3693	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"FCRL5, NLRP7, AC104699.1, POU2AF1, HBD, AMPD1, RP11-290F5.1, GPRC5D, AC104024.1, RP11-492E3.2, OSTN-AS1, FAM92B, LINC00582, IGLL1, P2RX5, IFNG-AS1, MYL2, MIXL1, PGLYRP2, FCRLA, TNFRSF13B, IGHV1OR15-1, TNFRSF17, WNT10A, CD3E, TRGC1, AL928768.3, PNOC, BLK, PTPRCAP, CD79A, CCR10, SIRPG, CXC"	Lymphocyte cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3694	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	"FABP1, PHGR1, AQP8, FXYD3, GUCA2A, CA4, KRT8, TSPAN1, SLC26A3, CTD-2228K2.5, GUCA2B, CEACAM5, PLAC8, LYPD8, PIGR, CLDN7, PRAP1, CLCA4, CEACAM7, GPR115, SDCBP2, IFI27, TAC1, TRIM31, C19orf33, CDHR5, ANPEP, MYO15B, MISP, SLC5A11, CEACAM1, KRTAP13-2, CLDN4, SMIM22, ELF3, CA2, KRT20, SLC15A1, C15"	Immature enterocytes 1	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3695	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"IGFBP7, LUM, C1S, CHI3L1, LGALS1, NNMT, COL3A1, IFITM3, RARRES2, DCN, COL1A2, MMP2, SPARC, C1R, COL1A1, LY6E, MMP3, COL6A2, FBLN1, SERPING1, MFAP4, COL6A1, TSPAN4, PLAT, TMEM176B, TNC, HSD11B1, MFGE8, PROCR, PDPN, F3, SOD3, PXDN, PLAU, CTSK, AGT, RBP1, TIMP1, TNFAIP6, CALD1, MMP1, DMKN, TPM2, CCL2"	Inflammatory fibroblasts	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3696	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"LINC00299, KRT86, TNFSF11, IL23R, KRT81, IL4I1, CSF2, LST1, LTB, KIT, CD300LF, LIF, TOX2, AREG, TMIGD2, AC022182.3, TYROBP, ALDOC, LINC00176, SPINK2, NCOA7, TNFRSF25, FXYD5, IL7R, NCR3, PRMT10, TXK, IL18R1, AMICA1, DLL1, XCL1, CD83, BHLHE40, CASP3, TNFSF13B, MAP3K8, SKIL, CXCL2, NFKBIA, MAFF, S"	Innate lymphoid cells (ILCs)	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3697	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"ACTA2, ACTG2, CNN1, MYH11, TAGLN, HSD17B6, PLN, SYT10, SOSTDC1, TPM2, MYL9, MFAP5, HHIP, DES, DIO2, CES1, LMOD1, PDLIM3, KCNMB1, NPNT, RBPMS2, RERG, AOC3, IGFBP7, AC131025.8, FAT4, FBXL7, MYLK, HHIP-AS1, LGALS1, NEXN, AF131217.1, PRKCDBP, MIR145, OSR1, PCDH7, SPESP1, SYNPO2, TGFB1I1, LRRC17, DC"	Myofibroblasts	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3698	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRC1, NKG7, KLRF1, SH2D1B, KRT81, XCL1, GNLY, FCER1G, FGR, TYROBP, TRDC, XCL2, KRT86, CLIC3, IL2RB, GZMK, CCL4, KLRD1, TXK, LINC00996, EOMES, GZMB, GZMA, CTSW, RP11-222K16.2, PRF1, CD160, TMSB4X, FCGR3A, CD7, FCRL6, AC017104.6, BCO2, MATK, SAMD3, CCL5, SRGN, TMIGD2, RP11-542M13.3, CATSPER1, AP"	Natural killer (NK) cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3699	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"GPX2, EPCAM, SMOC2, KRT18, LEFTY1, ASCL2, RPL10A, CDCA7, C17orf76-AS1, CAPN6, CYP4X1, PRDX5, CLDN3, OXGR1, RPL37A, CYP2W1, GAS5, PPP1R1B, NUPR1, RGMB, PIGR, LGR5, NRXN2, FMN2, MARCKSL1, TERT, RPL36A, CPXM2, COX5A, TMSB10, NR0B2, RPS7, RP11-84C10.4, TSPAN8, CD9, C1orf95, EPHB3, RPS2, RPL3, PTPR"	Stem cells	NA	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3700	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD40LG, F5, IL2, FOXP3, IL22, RP11-265P11.2, ICOS, CD5, RP11-664D1.1, CD3D, SUSD4, AC013264.2, RP11-403A21.2, RP11-18H21.1, TRBC2, IL7R, LINC00892, CD6, TRAC, IL17A, KLRB1, LAIR2, CTLA4, SLC4A10, IL26, CD2, LTB, CD3E, IL32, SPOCK2, CHRM3-AS2, CD226, CD52, PDCD1, CD28, TRAT1, LINC00861, CPA5"	CD4	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3701	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCL5, FASLG, ZNF683, KLRC2, TRGC1, CD8A, CD160, NKG7, RP11-291B21.2, TMSB4X, CD8B, TRDC, GZMB, TRGC2, IL32, FCRL6, GZMA, NCR1, KLRD1, PRF1, KIR3DL2, CD244, TBX21, XCL1, GZMH, CD3D, NCR2, HOPX, XCL2, RPL10, CD7, TMIGD2, RPS19, CRTAM, CD52, B2M, RPS2, KLRC4, TRBC2, GZMK, FAM179A, TPRG1, CTSW, CD3E, K"	CD8	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3702	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"HBG1, HGB2, HBZ, HGA1, HBA2, GYPA, CD235A, ERMAP"	Erythrocytes	NA	NA	31395745	Science	Exploring genetic interaction manifolds constructed from rich single-cell phenotypes	NA
3703	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"ITGAM, CD11B, CSF3R, LST1, CD33"	Granulocytes	NA	NA	31395745	Science	Exploring genetic interaction manifolds constructed from rich single-cell phenotypes	NA
3704	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"IGSF6, P2RY13, CLEC9A, FCGR1A, FPR3, CSF1R, CD163, MS4A4A, LILRB5, LILRB2, PKD2L1, CD209, AIF1, CLEC10A, MNDA, MPEG1, HLA-DRA, MS4A6A, RP11-365O16.3, ASGR2, CRHBP, SDS, VSIG4, MSR1, CSF3R, TREM2, CD1E, DSE1L3, LYZ, RP5-899E9.1, FCGR1B, CPVL, SIGLEC7, ADORA3, MS4A7, RP11-556E13.1, F13A1, LRRC"	Monocytes	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3705	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CD163, CD68, MRC1, MSR1, CSF1R"	Macrophages	Organoids	NA	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
3706	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"ATP6V0D2, TREM2, CD300LB, C1QC, C1QA, LILRB5, C1QB, HLA-DRA, AIF1, MS4A4A, SDS, CRHBP, CD209, OTOA, STAB1, TYROBP, PKD2L1, RP5-899E9.1, HLA-DPB1, MS4A7, CCL18, IGSF6, CD163, FOLR2, ADORA3, RN7SL138P, SIGLEC1, DSE1L3, HLA-DRB1, CD163L1, MS4A6A, CD74, LYZ, PLA2G7, RAB42, VSIG4, GSDMA, MSR1, MMP"	Macrophages	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3707	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"Exorh, Gnat1, Gngt1"	Nephron epithelial cells	NA	NA	32532809	Cancer Immunol Res	The single-cell transcriptomic landscape of early human diabetic nephropathy	NA
3708	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"CD105, ENG, CD73, NT5E, CD90, THY1"	Mesenchymal stem_stromal cells	Cell line	NA	32252818	Stem Cell Res Ther	Single-cell RNA-seq highlights heterogeneity in Human primary Wharton jelly mesenchymal stem/stromal cells cultured in vitro.	GSE76081
3709	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RGS5, COX4I2, HIGD1B, IGFBP7, NOTCH3, KCNJ8, CSRP2, BGN, FAM162B, ITGA7, EDNRA, FOXS1, MYL9, NDUFA4L2, GJA4, NR2F2-AS1, HEYL, RBPMS2, MCAM, RERG, STEAP4, HEY2, EBF1, KCNE4, EGFLAM, PDGFRB, CCDC3, CD36, GUCY1B3, RASL12, MGP, TPPP3, LGALS1, GJC1, GUCY1A3, PTGIR, EFHD1, REM1, TNS1, COL5A3, FRZB, AR"	Pericytes	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3710	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"MZB1, DERL3, TNFRSF17, IGJ, CD79A, AL928768.3, IGHA1, RP11-1084E5.1, FKBP11, AL109761.5, AMPD1, IGHA2, HERPUD1, FAM92B, SSR4, CCR10, XBP1, CRYBA4, RP11-301L8.2, SEC11C, IGLL1, RP11-492E3.2, TRIM55, LINC00582, UBE2J1, SPAG4, FCRL5, DUSP26, EAF2, LINC00525, IGLV1-50, FGF23, CDH15, SLC22A31"	Plasma cells	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3711	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	CST3	Platelet	NA	NA	33151294	Bioinformatics	ILoReg:a tool for high-resolution cell population identification from single-cell RNA-seq data	GSE116256
3712	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"APOE, DTNA, PMP2, ATP1B2, NMB, F3, HOPX, ID1, SCG3, CST3"	Astrocyte A	Organoids	NA	32485136	Neuron	CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes	NA
3713	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"S100A11, CLU, TPM2, ABAT, BEX1, TAGLNA, CD99, TMEM132A, VIM, LRP2"	Astrocyte B	Organoids	NA	32485136	Neuron	CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes	NA
3714	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"DCN, SULF1, PI16, COLE12, EFNB3, NTN1, TFF3, CD36, SERPIN11, NPTX2"	Astrocyte C	Organoids	NA	32485136	Neuron	CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes	NA
3715	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"S100A11, CCND1, ANXA2, CALD1, NEFL, PRSS23, S100A10, TAGLN, DCBLD2, VIM"	Astrocyte D	Organoids	NA	32485136	Neuron	CD49f Is a Novel Marker of Functional and Reactive Human iPSC-Derived Astrocytes	NA
3716	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"SOD2, C5AR1, G0S2"	Monocytes	Cell line	NA	32610077	IMMUNITY	Transcriptional and Functional Analysis of CD1c+ Human Dendritic Cells Identifies a CD163+ Subset Priming CD8+CD103+ T Cells	GSE151089
3717	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, TIGIT, IL2RA, HAVCR2"	Regulatory T cells (Treg)	Organoids	NA	30550791	Cell	Organoid Modeling of the Tumor Immune Microenvironment	GSE115978
3718	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, CTLA4, LAIR2, RPS27, IL32, RP11-265P11.2, RPL10, TRBC2, B2M, TRAC, BATF, TNFRSF9, IL10, RP11-316P17.2, IL2RA, CD3D, CDKL2, TIGIT, ARHGDIB, CD70, RPL41, LTB, LTA, CPA5, RGS6, ANKS1B, AC017002.1, TBC1D4, ZBTB32, DTHD1, C15orf53, RPS18, SRGN, PTPLA, RPL13A, RPL21, RPLP1, CD28, RGS1, SPOCK2"	Regulatory T cells (Treg)	Tissue	NA	31348891	Cell	Intra-and Inter-cellular Rewiring of Human Colon during Uicerative Colitis	NA
3719	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, FOXP3, CD8, PDCD1"	Regulatory T cells (Treg)	Tissue	NA	31675496	Cell	Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma	NA
3720	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, CD8B"	CD8+T-cells	NA	NA	32623457	J Infect Dis	Measles Virus Infects and Programs MAIT Cells for Apoptosis	NA
3721	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"NCR3, SLC4A10, RORC, DPP4, ZBTB16"	MAITcells	NA	NA	32623457	J Infect Dis	Measles Virus Infects and Programs MAIT Cells for Apoptosis	NA
3722	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD4"	T cells	NA	NA	32719530	Nat Methods	Cumulus provides cloud-based data analysis for large-scale single-cell and single-nucleus RNA-seq	NA
3723	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	NA	NA	33151294	Bioinformatics	ILoReg:a tool for high-resolution cell population identification from single-cell RNA-seq data	GSE116256
3724	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	NA	NA	33151294	Bioinformatics	ILoReg:a tool for high-resolution cell population identification from single-cell RNA-seq data	GSE116256
3725	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8B	CD8 T cells	NA	NA	33151294	Bioinformatics	ILoReg:a tool for high-resolution cell population identification from single-cell RNA-seq data	GSE116256
3726	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CST3	Dendritic cells	NA	NA	33151294	Bioinformatics	ILoReg:a tool for high-resolution cell population identification from single-cell RNA-seq data	GSE116256
3727	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CST3	Monocytes	NA	NA	33151294	Bioinformatics	ILoReg:a tool for high-resolution cell population identification from single-cell RNA-seq data	GSE116256
3728	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SNAI1, SOX10"	Neural crest cells	Tissue	Neural crest	31442438	Gastroenterology	"Activation of Hedgehog Signaling Promotes Development of Mouse and Human Enteric Neural Crest Cells, Based on Single-Cell Transcriptome Analyses"	NA
3729	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TUBB3, ELAVL4"	Neuronal cells	Tissue	Neural crest	31442438	Gastroenterology	"Activation of Hedgehog Signaling Promotes Development of Mouse and Human Enteric Neural Crest Cells, Based on Single-Cell Transcriptome Analyses"	NA
3730	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cranial	ETS1	Cranial	Organoids	Neuruloids	31501559	Nat Biotechnol	Self-organizing neuruloids model developmental aspects of Huntington disease in the ectodermal compartment	GSE118682
3731	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"FOXD3, CHD6, TFAP2A, NGFR, ZEB2, SNAI2"	Epithelial mesenchymal transition and migratory cells	Organoids	Neuruloids	31501559	Nat Biotechnol	Self-organizing neuruloids model developmental aspects of Huntington disease in the ectodermal compartment	GSE118682
3732	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"FOXD3, CHD6, TFAP2A, NGFR, ZEB2, SNAI2"	Epithelial mesenchymal transition and migratory cells	Organoids	Neuruloids	31501559	Nat Biotechnol	Self-organizing neuruloids model developmental aspects of Huntington disease in the ectodermal compartment	GSE118682
3733	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROD4, ELAVL2, STMN2"	Early born neurons	Organoids	Neuruloids	31501559	Nat Biotechnol	Self-organizing neuruloids model developmental aspects of Huntington disease in the ectodermal compartment	GSE118682
3734	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"PAX3, EMX1, EMX2, BARHL1, LHX5"	NE1	Organoids	Neuruloids	31501559	Nat Biotechnol	Self-organizing neuruloids model developmental aspects of Huntington disease in the ectodermal compartment	GSE118682
3735	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"PAX3, IRX3, DMBX1"	NE2	Organoids	Neuruloids	31501559	Nat Biotechnol	Self-organizing neuruloids model developmental aspects of Huntington disease in the ectodermal compartment	GSE118682
3736	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ctl	"GNLY, NKG7, PRF1, GZMA, CD8B, CD8A, CD3G, CD3E, CXCR6"	Ctl	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-20.	NA
3737	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Foxn4	"FOXN4, CCNO, MYCL, CDC20B"	Foxn4	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-19.	NA
3738	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	"FOXI1, CFTR, ASCL3, FOXI2"	Leukocytes	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-20.	NA
3739	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Moma	"CXCL10, IFIT3, IFIT1"	Moma	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-23.	NA
3740	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nrma	"CD300E, AREG, EREG, VCAN"	Nrma	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-24.	NA
3741	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rma	"C1QA, C1QC"	Rma	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-22.	NA
3742	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	OXGR1	Glandular epithelial cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3743	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20"	Circulating rv-specific B cells	Tissue	Nose	31940481	Cell Rep	T-bet+ Memory B Cells Link to Local Cross-Reactive IgG upon Human Rhinovirus Infection.	NA
3744	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD11c	Class-switched t-bet+ B cells	Tissue	Nose	31940481	Cell Rep	T-bet+ Memory B Cells Link to Local Cross-Reactive IgG upon Human Rhinovirus Infection.	NCT02111772; NCT01669603 and NCT02910401 located at https
3745	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD21, CD27"	Memory B cells	Tissue	Nose	31940481	Cell Rep	T-bet+ Memory B Cells Link to Local Cross-Reactive IgG upon Human Rhinovirus Infection.	NCT02111772; NCT01669603 and NCT02910401 located at https
3746	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3747	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	ACKR1	Endothelial cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3748	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	KRT5	Basal epithelial cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3749	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	KRT8	Apical epithelial cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3750	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	LTF	Glandular epithelial cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3751	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	FOXJ1	Ciliated epithelial cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3752	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A2	Fibroblasts	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3753	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"ALOX5, ALOX5AP, LTC4S, GGT1, CYSLTR1, PTGS1, PTGS2, TPSAB1"	Mast cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3754	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CYSLTR2, HLA-DRA"	Myeloid cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3755	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmablasts	"CD38, CD43, CD86"	Plasmablasts	Tissue	Nose	31940481	Cell Rep	T-bet+ Memory B Cells Link to Local Cross-Reactive IgG upon Human Rhinovirus Infection.	NCT02111772; NCT01669603 and NCT02910401 located at https
3756	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	TRBC2	T cells	Tissue	Nose	32371071	J ALLERGY CLIN IMMUNOL	Activation of the 15-lipoxygenase pathway in aspirin-exacerbated respiratory disease	NA
3757	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"TP63, BCAM, KRT5"	Basal cells	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-20.	NA
3758	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"HIST1H4C, HMGB2, STMN1"	P-Natural killer T (NKT) cells	Tissue	Nose	33361824	Nat Biotechnol	Hypertension delays viral clearance and exacerbates airway hyperinflammation in patients with COVID-21.	NA
3759	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, CD68, FCGR2A, CSF1R"	Macrophages	Tissue	Oral	32094336	International Journal of Oral Science	High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa	NA
3760	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"SLAMF7, CD79A, FCRL5"	B cells	Tissue	Oral	32094336	International Journal of Oral Science	High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa	NA
3761	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, VWF, ENG"	Endothelial cells	Tissue	Oral	32094336	International Journal of Oral Science	High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa	NA
3762	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"SFN, KRT6A, KRT10"	Epithelial cells	Tissue	Oral	32094336	International Journal of Oral Science	High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa	NA
3763	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"FAP, PDPN, COL1A2, DCN, COL3A1, COL6A1"	Fibroblasts	Tissue	Oral	32094336	International Journal of Oral Science	High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa	NA
3764	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"CMA1, MS4A2, TPSAB1, TPSB2"	Mast cells	Tissue	Oral	32094336	International Journal of Oral Science	High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa	NA
3765	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD2, CD3D, CD3E, CD3G"	T cells	Tissue	Oral	32094336	International Journal of Oral Science	High expression of ACE2 receptor of 2019-nCoV on the epithelial cells of oral mucosa	NA
3766	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm	"FOXC1, SIX1"	The developing paraxialmesoderm and somite	Cell line	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3767	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm	"TGFBI, TWIST1, SOX9"	The developing ventral somite and sclerotome	Cell line	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3768	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm	"FOXC1, SIX1"	The developing paraxialmesoderm and somite	Organoids	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3769	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesoderm	"TGFBI, TWIST1, SOX9"	The developing ventral somite and sclerotome	Organoids	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3770	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PAX6, SOX2, CDH6"	Neural cells	NA	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3771	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROG1, NEUROG2, NHLH1, ELAVL4"	Neural cells	NA	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3772	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"PAX6, SOX2, CDH6"	Neural cells	Organoids	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3773	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROG1, NEUROG2, NHLH1, ELAVL4"	Neural cells	Organoids	Organoids	31956040	Cell Stem Cell	Self-Organizing 3D Human Trunk Neuromuscular Organoids	GSE128357
3774	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cumulus granulosa cells	"IGFBP2, HTRA1, INHBB, IHH"	Cumulus granulosa cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3775	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"GPRC5A, TNFRSF12A"	Healthy stroma	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3776	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymph and blood vascular system	"PECAM1, CD34, CTGF"	Lymph and blood vascular system	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3777	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"GNL3, ARID5B"	Ovarian stromal cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3778	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stressed stroma	"XBP1, SELK"	Stressed stroma	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3779	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Theca cells	"PTH1, APOD, APOC1, WFDC1, MATN2, COLEC11, IFITM3, COL3A1, FOS, IGFBP5"	Theca cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3780	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Theca cells and stroma	"DCN, LUM"	Theca cells and stroma	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3781	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Theca externa	"DCN, LUM, STAR"	Theca externa	Tissue	Ovary	32783948	Cell Rep	Comparison of Human Antral Follicles of Xenograft versus Ovarian Origin Reveals Disparate Molecular Signatures.	GSE146512
3782	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Theca interna	"INSL3, CYP17A1, LHCGR"	Theca interna	Tissue	Ovary	32783948	Cell Rep	Comparison of Human Antral Follicles of Xenograft versus Ovarian Origin Reveals Disparate Molecular Signatures.	GSE146512
3783	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glial cells	"FABP7, S100B, BCAN"	Glial cells	Tissue	Ovary	32505346	Biochem Biophys Res Commun	Single-cell transcriptional profiling identifies a cluster of potential metastasis-associated UBE2C+ cells in immature ovarian teratoma	NA
3784	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granular cells	"AMH, HSD17B1, SERPINE2, GSTA1, VCAN, FST"	Granulosa cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3785	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granular cells	"AMH, AMHR2, CD99, CDH2, FOXL2, FSHR"	Granulosa cells	Tissue	Ovary	32783948	Cell Rep	Comparison of Human Antral Follicles of Xenograft versus Ovarian Origin Reveals Disparate Molecular Signatures.	GSE146512
3786	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"CD53, PTPRC"	Hematopoietic cells	Tissue	Ovary	32783948	Cell Rep	Comparison of Human Antral Follicles of Xenograft versus Ovarian Origin Reveals Disparate Molecular Signatures.	GSE146512
3787	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"JCHAIN, IGKC"	B cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3788	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, CLDN5, CD34, PECAM1, CCL14, SOCS3, TXNIP, CTGF, TM4SF1, NNMT, ANGPT2, EGFL7, CCL21, TFF3"	Endothelial cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3789	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"CD53, CXCR4"	Immune cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3790	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"CD68, IFI30"	Innate immune cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3791	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"TAGLN, RGS5, GJA4, CRYAB, ACTA2, PLN, ADIRF, MYH11"	Smooth muscle cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3792	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL7R, LTB, NKG7, CCL5"	T lymphocytes and nk cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3793	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CD68, APOC1"	Macrophages	Tissue	Ovary	32505346	Biochem Biophys Res Commun	Single-cell transcriptional profiling identifies a cluster of potential metastasis-associated UBE2C+ cells in immature ovarian teratoma	NA
3794	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, AIF1, CSF1R, CD163"	Macrophages	NA	Ovary	32572264	Nat Med	A single-cell landscape of high-grade serous ovarian cancer	GSE146026
3795	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"KRT18, CITED2, LIPH, AKIRIN1"	Mural granulosa cells and progenitor granulosa cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3796	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"WT1, EGR4, VCAN, FST"	Progenitor granulosa cells	Organoids	Ovary	31320652	Nat Commun	Single-cell reconstruction of follicular remodeling in the Human adult ovary	GSE118127
3797	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CD1E, CLEC10A"	Dendritic cells	Tissue	Ovary	32505346	Biochem Biophys Res Commun	Single-cell transcriptional profiling identifies a cluster of potential metastasis-associated UBE2C+ cells in immature ovarian teratoma	NA
3798	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, CDH1, CLDN7, KRT19"	Epithelial cells	Tissue	Ovary	32505346	Biochem Biophys Res Commun	Single-cell transcriptional profiling identifies a cluster of potential metastasis-associated UBE2C+ cells in immature ovarian teratoma	NA
3799	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"TAGLN, COL1AI, SPARC"	Fibroblasts	Tissue	Ovary	32505346	Biochem Biophys Res Commun	Single-cell transcriptional profiling identifies a cluster of potential metastasis-associated UBE2C+ cells in immature ovarian teratoma	NA
3800	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A, CD79B"	B cells	NA	Ovary	32572264	Nat Med	A single-cell landscape of high-grade serous ovarian cancer	GSE146026
3801	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PDPN, DCN, THY1"	Cancer associated fibroblasts (CAFS)	NA	Ovary	32572264	Nat Med	A single-cell landscape of high-grade serous ovarian cancer	GSE146026
3802	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CD1E, CCR7, CD83"	Dendritic cells	NA	Ovary	32572264	Nat Med	A single-cell landscape of high-grade serous ovarian cancer	GSE146026
3803	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	EPCAM	Epithelial cells	NA	Ovary	32572264	Nat Med	A single-cell landscape of high-grade serous ovarian cancer	GSE146026
3804	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"GATA1, hemoglobin-encoding genes"	Erythrocytes	NA	Ovary	32572264	Nat Med	A single-cell landscape of high-grade serous ovarian cancer	GSE146026
3805	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, PECAM1"	Endothelial cells	Tissue	Ovary	32783948	Cell Rep	Comparison of Human Antral Follicles of Xenograft versus Ovarian Origin Reveals Disparate Molecular Signatures.	GSE146512
3806	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"RGS5, PDGFR_"	Smooth muscle cells	Tissue	Ovary	32783948	Cell Rep	Comparison of Human Antral Follicles of Xenograft versus Ovarian Origin Reveals Disparate Molecular Signatures.	GSE146512
3807	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD2, CD3D, CD3E, CD3G"	T cells	NA	Ovary	32572264	Nat Med	A single-cell landscape of high-grade serous ovarian cancer	GSE146026
3808	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Delta cells	SST	Delta cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3809	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Midbrain	FOXA2	Midbrain	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3810	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pancreatic cell	"PRSS1, KRT19, INS, GCG, COL1A1, PECAM1, TYROBP, SST, PPY"	Pancreatic cell	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3811	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pancreatic cell	KRT19	Pancreatic ductal cells	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111672.
3812	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pp cells	PPY	Pp cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3813	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Quiescent stellate cells	"MCAM, PDGFRB, FABP4, NOTCH3, DES, ITGA1, ITGA7, COL4A1, SPARCL1, COL4A2"	Quiescent stellate cells	Tissue	Pancreas	33212097	Gastroenterology	Single-Nucleus and In Situ RNA-Sequencing Reveal Cell Topographies in the Human Pancreas	EGAS00001004653
3814	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stellate cells	"COL4A1, SPARCL1, COL4A2, NEGR1, COL5A2, COL6A3, LAMA2, DCN, LAMB1"	Activated stellate cells	Tissue	Pancreas	33212097	Gastroenterology	Single-Nucleus and In Situ RNA-Sequencing Reveal Cell Topographies in the Human Pancreas	EGAS00001004653
3815	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"FXYD3, AGR2"	Tumor cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3816	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	TM4SF1	Cancer cells cluster 1	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111672.
3817	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	S100A4	Cancer cells cluster 2	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111672.
3818	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"RBP4, SCGN, FFAR4, TMED6, ACTB, TTR, TUBA4A, CLU, ABHD3, TAGLN2, PPP1R1A, FXYD2, NPTX2, ASCL2, ACTG1, TUBB2A, SCGB2A1, PRSS23"	Beta-cells sub1	Tissue	Pancreas	29950394	Diabetes	Pseudotime Ordering of Single Human beta-Cells Reveals States of Insulin Production and Unfolded Protein Response	NA
3819	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"SPP1, TFF3, MEG3, GPX3, IGFBP5, NPY, RPL6, RPS4X, RBP1, RGS16, GS, SCG2, MALAT1, PEMT, SIX3, CDKN1C, IAPP, PAM, SEC11C, NENF, CDKN1A, STMN2, RASD1, NEAT1, AP3B1, MLLT11, BTG2, C10orf10, FOS, PCP4, JUNB, ID3, ID1"	Beta-cells sub2	Tissue	Pancreas	29950394	Diabetes	Pseudotime Ordering of Single Human beta-Cells Reveals States of Insulin Production and Unfolded Protein Response	NA
3820	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"ENSG00000211459, ENSG00000210082, REG1B, CPE, MT2A, INS, CHGA, CKB, DLK1, TIMP1, LAMP1, CHGB, IGFBP7, ASB9, REG1A, PRSS1"	Beta-cells sub3	Tissue	Pancreas	29950394	Diabetes	Pseudotime Ordering of Single Human beta-Cells Reveals States of Insulin Production and Unfolded Protein Response	NA
3821	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	INS	Beta cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3822	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Beta cells	"NKX6-1, NEUROD1, RFX6, GCK, ISL1, SYT4, PDX1"	Beta cells	Organoids	Pancreas	32814902	Nature	Immune-evasive Human islet-like organoids ameliorate diabetes	PRJNA505532
3823	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Acinar cells	PRSS1	Acinar cells	Tissue	Pancreas	29608177	Nature Biotechnology	Batch effects in single-cell RNA -sequencing data are corrected by matching mutual nearest neighbors	"GSE81076, GSE85241, GSE86473, E-MTAB-5061"
3824	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	COL1A1	Mesenchymal cells	Tissue	Pancreas	29608177	Nature Biotechnology	Batch effects in single-cell RNA -sequencing data are corrected by matching mutual nearest neighbors	"GSE81076, GSE85241, GSE86473, E-MTAB-5061"
3825	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	KRT19	Ductal cells	Tissue	Pancreas	29608177	Nature Biotechnology	Batch effects in single-cell RNA -sequencing data are corrected by matching mutual nearest neighbors	"GSE81076, GSE85241, GSE86473, E-MTAB-5061"
3826	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	"FXYD2, CLU"	Ductal cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3827	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	"APOL1, ERO1A, CA9"	Ductal subpopulation 1	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111672.
3828	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	"TFF1, TFF2, TFF3"	Ductal subpopulation 2	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111672.
3829	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	"CRISP3, CFTR"	Ductal subpopulation 3	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111673.
3830	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	"CD74, HLA-DPA1, HLA-DQA2, HLA-DRA, HLA-DRB1 , HLA-DRB5 , C1S, C4A, C4B, CFB, CFH"	Ductal subpopulation 4	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111674.
3831	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	"KRT19, SOX9"	Ductal cells	Tissue	Pancreas	32354994	Gigascience	Single-cell resolution analysis of the Human pancreatic ductal progenitor cell niche	GSE131886
3832	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ductal cells	KRT19	Ductal cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3833	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EpCAM, KRT19"	Ductal epithelial cells	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3834	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"NEUROD1, NKX2-2"	Endocrine cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3835	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"CHGA, NEUROG3, NEUROD1, NKX2-2, ISL1"	Endocrine cells	Cell line	Pancreas	32094658	Nature Biotechnology	Targeting the cytoskeleton to direct pancreatic differentiation of Human pluripotent stem cells	NA
3836	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endocrine cells	"ISL1, INS, GCG, SST, PPY"	Endocrine cells	Tissue	Pancreas	32354994	Gigascience	Single-cell resolution analysis of the Human pancreatic ductal progenitor cell niche	GSE131886
3837	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CDH2, SNAI2, ZEB1"	Epithelial mesenchymal transition like cells	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3838	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"KRT7, PRSS1"	Exocrine progenitors	Cell line	Pancreas	32094658	Nature Biotechnology	Targeting the cytoskeleton to direct pancreatic differentiation of Human pluripotent stem cells	NA
3839	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	PPY	Gamma islets	Tissue	Pancreas	29608177	Nature Biotechnology	Batch effects in single-cell RNA -sequencing data are corrected by matching mutual nearest neighbors	"GSE81076, GSE85241, GSE86473, E-MTAB-5061"
3840	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, FAP, VIM, PDGFRA"	CAFs	Tissue	Pancreas	31197017	Cancer Discov	Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts	GSE129457
3841	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A2, FAP, VIM, IL6, IL8, CXCL1, CXCL2, CCL2, CXCL12, CFD, LM, DPT"	ICAFs	Tissue	Pancreas	31197017	Cancer Discov	Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts	GSE129458
3842	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A3, FAP, VIM, ACTA2, TAGLN, MYL9, TPM1, TPM2, MMP11, POSTN, HOPX"	MyCAFs	Tissue	Pancreas	31197017	Cancer Discov	Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts	GSE129459
3843	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A4, FAP, VIM, H2-Aa, H2-Ab1, Cd74"	ApCAFs	Tissue	Pancreas	31197017	Cancer Discov	Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts	GSE129460
3844	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Pancreas	31197017	Cancer Discov	Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts	GSE129455
3845	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	GCG	Islet alpha cells	Tissue	Pancreas	29608177	Nature Biotechnology	Batch effects in single-cell RNA -sequencing data are corrected by matching mutual nearest neighbors	"GSE81076, GSE85241, GSE86473, E-MTAB-5061"
3846	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	GCG	Islet alpha cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3847	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	ARX	Islet alpha cells	Organoids	Pancreas	32814902	Nature	Immune-evasive Human islet-like organoids ameliorate diabetes	PRJNA505532
3848	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	INS	Islet beta cells	Tissue	Pancreas	29608177	Nature Biotechnology	Batch effects in single-cell RNA -sequencing data are corrected by matching mutual nearest neighbors	"GSE81076, GSE85241, GSE86473, E-MTAB-5061"
3849	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Islet cells	SST	Islet delta cells	Tissue	Pancreas	29608177	Nature Biotechnology	Batch effects in single-cell RNA -sequencing data are corrected by matching mutual nearest neighbors	"GSE81076, GSE85241, GSE86473, E-MTAB-5061"
3850	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, MZB1, IGHA1"	B cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3851	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PLVAP, PECAM1"	Endothelial cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3852	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"LUM, DCN"	Fibroblasts	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3853	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"HLA-DRA, C1QA"	Monocytes/macrophages	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3854	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSB2, MS4A2"	Mast cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3855	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	IL1B	Macrophages A	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111672.
3856	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, MS4A4A"	Macrophages B	NA	Pancreas	31932730	Nature Biotechnology	Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas	GSE111672.
3857	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD74, PTPRC, ZEB2, HLA-DRA, HLA-DRB1, HLA-DPA1"	Macrophages	Tissue	Pancreas	33212097	Gastroenterology	Single-Nucleus and In Situ RNA-Sequencing Reveal Cell Topographies in the Human Pancreas	EGAS00001004653
3858	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	MAP2	Neuronal cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3859	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"PDX1, SOX9, NKX6-1"	Pancreatic progenitor	Cell line	Pancreas	32094658	Nature Biotechnology	Targeting the cytoskeleton to direct pancreatic differentiation of Human pluripotent stem cells	NA
3860	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RGS5, PDGFRB"	Pericytes	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3861	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Acinar cells	AMY2B	Acinar cells	Tissue	Pancreas	32354994	Gigascience	Single-cell resolution analysis of the Human pancreatic ductal progenitor cell niche	GSE131886
3862	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	CDH1	Epithelial cells	Tissue	Pancreas	32354994	Gigascience	Single-cell resolution analysis of the Human pancreatic ductal progenitor cell niche	GSE131886
3863	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	CD4	CD4 T cells	Tissue	Pancreas	32491160	J Exp Med	Accumulation of long-chain fatty acids in the tumor microenvironment drives dysfunction in intrapancreatic CD8+ T cells	NA
3864	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8a, CD8B"	CD8 T cells	Tissue	Pancreas	32491160	J Exp Med	Accumulation of long-chain fatty acids in the tumor microenvironment drives dysfunction in intrapancreatic CD8+ T cells	NA
3865	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Acinar cells	PRSS1	Acinar cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3866	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	PECAM1	Endothelial cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3867	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	TYROBP	Immune cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3868	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	COL1A1	Mesenchymal cells	Tissue	Pancreas	32579880	Cell Stem Cell	A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.	GSE147903
3869	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	"ZEB2, PDGFRB, ITGA1, COL4A1, SPARCL1, COL4A2, NEGR1, LAMB1, CDH19, S100B, CRYAB, PMP22, SCN7A"	Schwann cells	Tissue	Pancreas	33212097	Gastroenterology	Single-Nucleus and In Situ RNA-Sequencing Reveal Cell Topographies in the Human Pancreas	EGAS00001004653
3870	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD8A"	T cells	Tissue	Pancreas	31197017	Cancer Discov	Cross-Species Single-Cell Analysis of Pancreatic Ductal Adenocarcinoma Reveals Antigen-Presenting Cancer-Associated Fibroblasts	GSE129456
3871	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CD1"	Dendritic cells	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3872	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"KDR, VWF"	Endothelial cells	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3873	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	KRT19	Epithelial cells	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3874	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, ACTA2, SPARC"	Fibroblasts	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3875	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"IL6, CXCL12"	Inflammatory Fibroblasts	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3876	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CD74, HLA-DQA1"	Antigen presentation cancer associated Fibroblasts	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3877	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD3D, IL7R, CD3G"	Lymphocytes	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3878	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"CDH2, SNAI2, ZEB1, VIM, FN1"	Mesenchymal cells	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3879	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD68, G-CSF"	Monocytes	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3880	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	PROM1	Stem cells	NA	Pancreas	32988401	Genome Med	Single-cell transcriptome analysis of tumor and stromal compartments of pancreatic ductal adenocarcinoma primary tumors and metastatic lesions	GSE154778
3881	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRAC, CD3D"	T cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
3882	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, PLVAP, VWF, CD36, SLCO2A1, CD74, SPARCL1"	Endothelial cells	Tissue	Pancreas	33212097	Gastroenterology	Single-Nucleus and In Situ RNA-Sequencing Reveal Cell Topographies in the Human Pancreas	EGAS00001004653
3883	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"DMBT1, FCGBP, PIGR, WFDC2"	C4	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3884	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"PSCA, TFF1"	C1	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3885	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"PTPRC, SDC1, XBP1, CD38"	Plasma cells	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3886	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, CD40LG, IL7R"	CD4 T cells	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3887	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8A, CD8B, GZMA, GZMB, GZMK, IFNG"	CD8 T cells	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3888	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"PTPRC, CD19, CD79A, MS4A1"	B cells	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3889	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, YAP1, CDH1, KRT8, MUC1"	Epithelial cells	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3890	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, COL1A2"	Fibroblasts	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3891	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"PTPRC, S100A8, S100A9, CD14, FCG3A, ITGAX, CD68, LYZ, CD163"	Myeloid cells	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3892	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"PTPRC, NCAM1, FCGR3A, XCL1, GZMB, IFNG, NKG7"	Natural killer (NK) cells	Tissue	Peritoneum	33398161	Nature Medicine	Single-cell dissection of intratumoral heterogeneity and lineage diversity in metastatic gastric adenocarcinoma.	EGAS00001004443
3893	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gonadotrophs	NRA5A1	Gonadotrophs	Tissue	Pituitary	33168897	Sci Rep	Transcriptome and methylome analysis reveals three cellular origins of pituitary tumors.	GSE125670
3894	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Somatotropes	POU1F1	"Somatotrope, lactotrope and thyrotrope adenomas"	Tissue	Pituitary	33168897	Sci Rep	Transcriptome and methylome analysis reveals three cellular origins of pituitary tumors.	GSE125670
3895	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Corticotropes	TBX19	Corticotropes	Tissue	Pituitary	33168897	Sci Rep	Transcriptome and methylome analysis reveals three cellular origins of pituitary tumors.	GSE125670
3896	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hofbauer cells	"D163, CD209"	Hofbauer cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3897	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphatic endothelial decidual cells	"CD34, CDH5, EDNRB, PDPN, TIE1"	Lymphatic endothelial decidual cells	Organoids	Placentas	31829938	eLife	Single cell transcriptional signatures of the Human placenta in term and preterm parturition	"GSE114037, GSE96083"
3898	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Maternal decidual cells	"DKK1, IGFBP1, PRL"	Maternal decidual cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3899	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	The non-proliferative nature of npictbs	"XIST, DDX3X, EIF1AX, PAGE4"	The non-proliferative nature of npictbs	Organoids	Placentas	31829938	eLife	Single cell transcriptional signatures of the Human placenta in term and preterm parturition	"GSE114037, GSE96083"
3900	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD14, CD52, CD83, CD86"	Dendritic cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3901	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"HY1, COL3A1, COL1A1, VIM"	Fibroblastic and mesenchymal cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3902	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, CSF1R, CD115, CD53, AIF1"	Monocyptes_macrophages	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3903	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CSF1R, CD14, AIF1, CD53"	Myeloid cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3904	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"COL1A1, COL3A1, THY1, VIM"	Stromal cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3905	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3G, GZMA"	T-lymphocyte cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3906	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD34, PLVAP, CDH5, ICAM1"	Vascular endothelial cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3907	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"MYH11, CNN1"	Vascular smooth muscle cells	Tissue	Placentas	28830992	Proc Natl Acad Sci U S A	Integrative single-cell and cell-free plasma RNA transcriptomics elucidates placental cellular dynamics	NA
3908	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Organoids	Placentas	31829938	eLife	Single cell transcriptional signatures of the Human placenta in term and preterm parturition	"GSE114037, GSE96083"
3909	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, NKG7"	Natural killer (NK) cells	Organoids	Placentas	31829938	eLife	Single cell transcriptional signatures of the Human placenta in term and preterm parturition	"GSE114037, GSE96083"
3910	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"VIM, HES1, NFIA"	Neuron progenitors	Cell line	Pluripotent stem cells	33053338	Cell Rep	Single-Cell Transcriptomics of Parkinson Disease Human In Vitro Models Reveals Dopamine Neuron-Specific Stress Responses	GSE126836
3911	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"STMN2, PRPH"	Neurons	Organoids	Pluripotent stem cells	32528170	Sci Rep	Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating	DRA009071
3912	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SLC5A7, SLC18A3"	Parasympathetic-like neurons	Organoids	Pluripotent stem cells	32528170	Sci Rep	Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating	DRA009071
3913	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TH, DDC, DBH"	Sympathetic-like neurons	Organoids	Pluripotent stem cells	32528170	Sci Rep	Selective Induction of Human Autonomic Neurons Enables Precise Control of Cardiomyocyte Beating	DRA009071
3914	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SYT1, DCX, MAP2, SNAP25, PBX1, KCNJ6, MAP2, SP25"	Mature neuronal	Cell line	Pluripotent stem cells	33053338	Cell Rep	Single-Cell Transcriptomics of Parkinson Disease Human In Vitro Models Reveals Dopamine Neuron-Specific Stress Responses	GSE126836
3915	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SYT1, DCX, MAP2, SNAP25, PBX1, KCNJ6, PBX1, KCNJ6"	Dopaminergic lineage	Cell line	Pluripotent stem cells	33053338	Cell Rep	Single-Cell Transcriptomics of Parkinson Disease Human In Vitro Models Reveals Dopamine Neuron-Specific Stress Responses	GSE126836
3916	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal intermediate cells	"KRT5, KRT14, KRT19, TP63"	Basal intermediate cells	Tissue	Prostate	33420488	Nat Cell Biol	Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to Human prostate cancer progression.	GSE141445
3917	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dividing cells	"MKI67, CCNB1, CENPF"	Dividing cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3918	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Intermed	KRT18	Intermed	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3919	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pan-epi	"TACSTD2, ITGA6, TACSTD2"	Pan-epi	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3920	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pc3 prostasphere	MMP9	Pc3 prostasphere	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3921	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"SERPINB1, KRT13, LYPD3, PSCA, LY6D, CSTB, LCN2, KLK11"	Prostate epithelial stem cell	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3922	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Prostate cells	"SCGB1A1, KRT13"	Prostate scgb1a1+ cells	Tissue	Prostate	30566875	Cell Rep	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra	GSE120716
3923	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Quiescent prostate stem	KRT13	Quiescent prostate stem	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3924	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secondary cell	"LY6D, PSCA"	Secondary cell	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3925	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	KLK3	Secretory epithelium	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3926	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Arrest cells	GAS5	Arrest cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3927	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"CD326, CD324, CD49f, CD271, KRT5, KRT14, TP36"	CD271+ basal epithelia	Tissue	Prostate	30566875	Cell Rep	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra	GSE120716
3928	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CD200	Endothelial cells	Tissue	Prostate	30566875	Cell Rep	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra	GSE120716
3929	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PDPN, DCN"	Fibroblasts	Tissue	Prostate	30566875	Cell Rep	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra	GSE120716
3930	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	DCN	Smooth muscle cells	Tissue	Prostate	30566875	Cell Rep	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra	GSE120716
3931	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythroblasts	HBB	Erythroblasts	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3932	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"PAX5, CD79A, CXCR5"	B cells	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3933	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT13	Basal cells	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3934	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3935	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	KRT18	Epithelial cells	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3936	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	DCN	Fibroblasts	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3937	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	ESR1	Fibroblasts	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3938	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"BMP5, CXCL13"	Myofibroblasts	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3939	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"PDPN, KRT5, KRT14, DKK1, KRT15, ITGA6KRT6A, PDPN, SERPINB13, MMP9"	Basal cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3940	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	MKI67	Dividing basal cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3941	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"IFI27, IFI6, CD200"	Endothelial cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3942	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT5, KRT8, KRT18, TP63"	Epithelial cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3943	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"FGF2, PTGS2"	Fibroblasts	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3944	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	ACTA2	Muscle cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3945	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	MYL9	Smooth muscle cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3946	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"PSCA, KRT13, LCN2, LYPD3, SERPINB1, CSTB, CENPF, KLK11, KRT6A, LY6D, SCGB1A1, CD24, PPL, LY6D, SERPINB13, CRABP2"	Stem cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3947	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	TIMP3	Stromal cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3948	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"KRT6A, SERPINB13"	KRT6A progenitor	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3949	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	PTPRC	Leukocytes	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3950	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Luminal cells	"KRT8, KRT18, AR, KLK3, KLK11, ACPP, ALK3"	Luminal cells	Tissue	Prostate	31317052	Am J Clin Exp Urol	Single-cell RNA-Seq analysis identifies a putative epithelial stem cell population in Human primary prostate cells in monolayer and organoid culture conditions	GSE130318
3951	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Luminal cells	"KRT8, KRT18, KLK4, SLC45A3"	Type 1 luminal cell	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3952	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Luminal cells	"KRT8, KRT18, CP"	Type 2 luminal cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3953	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Luminal cells	"KRT8, KRT18, B4GALT1, IFI6"	Type 3 luminal cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3954	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"CD326, CD324, CD26, CD38, CD26, KLK3, ACPP, MSMB, GP2, NEFH, NPY"	CD26+ luminal epithelia	Tissue	Prostate	30566875	Cell Rep	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra	GSE120716
3955	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"VIM, ACTA2, THY1"	Cancer associated fibroblasts (CAFS)	Tissue	Prostate	31763714	Prostate	Heterogeneity of Human prostate carcinoma_associated fibroblasts implicates a role for subpopulations in myeloid cell recruitment	GSE123359
3956	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	MS4A6A	Macrophages	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3957	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroendocrine cells	"CHGA, CHGB, LY6D, SCGB3A1, PSCA, SCG2"	Neuroendocrine cells	Tissue	Prostate	30566875	Cell Rep	A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra	GSE120716
3958	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroendocrine cells	CHGA	Neuroendocrine cells	Tissue	Prostate	31094703	JCI Insight	Genomic analysis of benign prostatic hyperplasia implicates cellular re-landscaping in disease pathogenesis	All RNA-Seq and WES data are available from the database of Genotypes and Phenotypes (phs001698.v1.p1).
3959	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroendocrine cells	NTM	Neuroendocrine cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3960	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	IGKC	B cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3961	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT5	Basal cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3962	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	EGFL7	Endothelial cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3963	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	TAGLN2	Fibroblasts	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3964	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	HPGDS	Mast cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3965	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	DPT	Mesenchymal cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3966	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	GEM	Myofibroblasts	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3967	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	PLN	Smooth muscle cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3968	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	GAMB	T cells	Tissue	Prostate	33032611	Mol Cancer	Identification of a distinct luminal subgroup diagnosing and stratifying early stage prostate cancer by tissue-based single-cell RNA sequencing	GSE157703
3969	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	THY1	Cancer associated fibroblasts (CAFS)	Tissue	Prostate	33420488	Nat Cell Biol	Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to Human prostate cancer progression.	GSE141445
3970	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, VWF, ENG"	Endothelial cells	Tissue	Prostate	33420488	Nat Cell Biol	Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to Human prostate cancer progression.	GSE141445
3971	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	ACTA2	Fibroblasts	Tissue	Prostate	33420488	Nat Cell Biol	Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to Human prostate cancer progression.	GSE141446
3972	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"MMS4A2, TPSAB1, TPSB2"	Mast cells	Tissue	Prostate	33420488	Nat Cell Biol	Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to Human prostate cancer progression.	GSE141447
3973	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"LYZ, FCGR3A, CSF1R, CD68, CD163, CD14, HAVCR2, CD4"	Monocytes	Tissue	Prostate	33420488	Nat Cell Biol	Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to Human prostate cancer progression.	GSE141448
3974	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gial cells	RLBP1	Gial cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
3975	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neurogenic cells	"ATOH7, HES6, NEUROG2, OLIG2"	Neurogenic cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
3976	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Photoreceptors	"CRX, OTX2, NEUROD1, PRDM1"	Photoreceptor precursors	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
3977	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ganglion cells	"SNCG, NEFM"	Retinal ganglion cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
3978	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ganglion cells	"NEFL, GAP43, SNCG"	Retinal ganglion cells	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
3979	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ganglion cells	NEFL	Retinal ganglion cells	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
3980	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ganglion cells	"GAP43, NEFL, NEFM, NRN1, POU4F2, RPBMS, SLC17A6, SNCG, THY"	Retinal ganglion cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
3981	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cell	RPE65	Retina pigment epithelium	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
3982	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cell	"SERPINF1, RLBP1"	Retina pigment epithelium	Tissue	Retina	32069977	Cells	Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations	GSE142449
3983	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cell	"SERPINF1, RLBP1"	Retina pigment epithelium	Tissue	Retina	32069977	Cells	Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations	GSE142449
3984	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rod photoreceptor cells	"RHO, NRL"	Rod photoreceptor cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
3985	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rod photoreceptors cells	"PDE6A, CNGA1, RHO"	Rods	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
3986	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rods	PDE6A	Rods	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
3987	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rods	NRL	Rods	Tissue	Retina	32023475	Cell Rep	"Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures"	NA
3988	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rods	NRL	Rods	Tissue	Retina	32023475	Cell Rep	"Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures"	NA
3989	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Rods	"CNGA1, GNAT1, GNGT1, GNGA1, NR2E3, NRL, PDE6A, PPEF2, RHO"	Rods	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
3990	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bipolar cells	"TRPM1, GNG13"	Bipolar cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
3991	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bipolar cells	"VSX2, OTX2"	Bipolar cells	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
3992	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bipolar cells	CAMK2B	Bipolar cells	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
3993	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bipolar cells	"VSX1, GRM6"	Bipolar cells	Tissue	Retina	32023475	Cell Rep	"Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures"	NA
3994	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bipolar cells	"VSX1, GRM6"	Bipolar cells	Tissue	Retina	32023475	Cell Rep	"Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures"	NA
3995	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Bipolar cells	"CAMK2B, GRM6, PROX1, TMEM215, TRNP1, TRPM1, VSX1, VSX2"	Bipolar cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
3996	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cones	"PDE6H, ARR3"	Cone photoreceptors	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
3997	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cones	"ARR3, GNGT2, GUCA1C"	Cone photoreceptors	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
3998	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cones	"ARR3, CNBG3, GNAT2, GNGT2, GRK7, GUCA1C, PDE6C, PDE6H, OPN1LW, RXRG, THRB"	Cone photoreceptors	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
3999	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cones	"ARR3, GNGT2, GUCA1C"	Cone photoreceptors	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4000	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cones	"ARR3, GNGT2, GUCA1C"	Cone photoreceptors	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4001	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cones	GNAT2	Cones	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
4002	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cones	"ARR3, GNAT2, GUCA1C, GNGT2, GUCA1A, OPN1SW, OPN1MW, OPN1LW, PDE6H"	Cones	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4003	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amacrine cells	NRXN2	Amacrine cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
4004	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FLT1, VWF"	Endothelial cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
4005	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	C1QA	Microglia cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
4006	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Horizontal cells	ONECUT2	Horizontal cells	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
4007	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Horizontal cells	"ONECUT1, ONECUT2"	Horizontal cells	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4008	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Horizontal cells	ONECUT1	Horizontal cells	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
4009	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Horizontal cells	"LHX1, ONECUT1, ONECUT2"	Horizontal cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4010	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amacrine cells	"GAD1, CALB1, CHAT"	Amacrine cells	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4011	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"HLA-DPA1, HLA- DPB1, HLA-DRA"	Microglia cells	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4012	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"VIM, GLUL, S100A1"	Muller glia and Retinal astrocytes	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4013	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	GFAP	Retinal astrocytes cells	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4014	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amacrine cells	GAD1	Amacrine cells	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
4015	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	GLUL	Microglia cells	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
4016	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	C1QA	Microglia cells	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
4017	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"PTPRC, AIF1"	Macrophages	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4018	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"PTPRC, CD79A"	B cells	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4019	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4020	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	IGF2	Fibroblasts	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4021	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"PTPRC, KIT"	Mast cells	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4022	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"PTPRC, CD2"	Natural killer T (NKT) cells	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4023	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	MLANA	Melanocytes	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4024	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"RLBP1, CRALBP1, NFKBAI"	Muller cells	Tissue	Retina	32069977	Cells	Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations	GSE142449
4025	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"RLBP1, CRALBP1, NFKBAI"	Muller cells	Tissue	Retina	32069977	Cells	Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations	GSE142449
4026	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"RLBP1, CRALBP"	Muller glia cells	Tissue	Retina	31436334	EMBO J	A single-cell transcriptome atlas of the adult Human retina	E-MTAB-7316
4027	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"RLBP1, SLC1A3"	Muller glia cells	Tissue	Retina	32023475	Cell Rep	"Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures"	NA
4028	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"RLBP1, SLC1A3"	Muller glia cells	Tissue	Retina	32023475	Cell Rep	"Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures"	NA
4029	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muller cells	"APOE, AQP4, CLU, GLUL, RLBP1"	Muller glia cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4030	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"IFITM3, GFAP, SOCS3, SLPI, CH25H"	Astrocytes	Tissue	Retina	32069977	Cells	Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations	GSE142449
4031	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"IFITM3, GFAP, SOCS3, SLPI, CH25H"	Astrocytes	Tissue	Retina	32069977	Cells	Single-Cell RNA Sequencing in Human Retinal Degeneration Reveals Distinct Glial Cell Populations	GSE142449
4032	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amacrine cells	"CALB1, CHAT, C1QL2, GAD1, NRXN2, PAX6, TFAP2A, TFAP2B"	Amacrine cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4033	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ADAMTS9, RGS5"	Endothelial cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4034	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"AIF1, C1QA, HLA-DPA1, HLA-DPB1, HLA-DRA, TMEM119"	Microglia cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4035	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"CCND1, FGF15, FOS, HES1, LHX2, NANOG, SFRP2, SOX2"	Stem cells	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4036	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	RGS5	Pericytes	Tissue	Retina	31075224	Exp Eye Res	Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.	GSE130636
4037	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	ACTA2	Pericytes	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4038	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	VWF	Pericytes	Organoids	Retina	32085662	Int J Mol Sci	Using Transcriptomic Analysis to Assess Double-Strand Break Repair Activity: Towards Precise in Vivo Genome Editing	"GSE130636, GSE63473, GSE122566"
4039	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	PLP1	Schwann cells	Tissue	Retina	31712411	Proceedings of the National Academy of Sciences	Single-cell transcriptomics of the Human retinal pigment epithelium and choroid in health and macular degeneration	GSE135922
4040	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular cells	TM4SF1	Vascular cells	Tissue	Retina	31653841	Nat Commun	Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration	GSE137537 and GSE137847
4041	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Faps	"PDGFRA, CD343"	Faps	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4042	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"S100A8, LYZ, AIF1"	Myeloid cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4043	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Prg4pos fap cells	"FBN1, PRG4, PCOLCE2"	Prg4pos fap cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4044	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Satellite cells	"APOC1, APOE, MYF5"	Satellite cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4045	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, TCL1A, FCRL1"	B cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4046	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FABP4, IFI27, VWF"	Endothelial cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4047	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"CCL4, NKG7, GNLY"	Natural killer (NK) cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4048	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"DARC, CCL14, PLVAP"	PCV endothelial cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4049	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"PERGL, MYH11, PLN"	Smooth muscle cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4050	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RGS5, NDUFA4L2, HIGD1B"	Pericytes	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4051	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, IL7R, LTB"	T cells	Tissue	Skeletal muscle	31937892	Sci Rep	Single-cell transcriptional profiles in human skeletal muscle	GSE130646
4052	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cornified envelope cells	"LOR, SPRR2G, ASPRV1, LCE1C, SPRR2E, CST6, CRCT1, C1orf68, LCE1B, PSORS1C2, LCE1E, FLG2, FLG, LCE2B, IL37, CTSV, KRT23, LCE1A, FAM25A, WFDC12, AZGP1, LCE2D, CALML5, SBSN, CTNNBIP1"	Cornified envelope cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4053	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ec	SELE	Ec	Tissue	Skin	31930613	FASEB J	Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing.	NA
4054	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glandular cells	NA	Glandular cells	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4055	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Il36 uprabasal	"KRTDAP, KRT10, KRT1, SPRR1B, S100A7, SPRR2A, DMKN, SLPI, SBSN, SERPINB4"	Il36 uprabasal	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4056	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dentritic cells	"MRC1, CD206"	Inflammatory dentritic cells	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4057	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cell	"GAPDH, KRT6A, S100A9, MT1E, MT1G, GJB2, SERPINB4, SERPINB3, RPL36A, RPS17"	Injured epithelium	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4058	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Inner bulge	"KRT6A, SERPINB3, GAPDH, S100A9, RPS10, ENO1, KRT6B, SERPINB4, TUBA1B, KRT16"	Inner bulge	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4059	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Kc	"KRT1, KRT14"	Kc	Tissue	Skin	31930613	FASEB J	Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing.	NA
4060	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Langerhans cells	"CD1A, EPCAM, CLDN1, PLEK2, CD207, CD1A"	Langerhans cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4061	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Langerhans cells	CD1A	Langerhans cells	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4062	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	"POSTN, CCL27, ASPN, B2M, KRT15, HLA-B, KREMEN2, DST, IFI27, DAAM1"	Long-lived hf stem cells	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4063	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"EPCAM, TP63"	Malignant cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123823
4064	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Milotic cell	KRT14	Milotic cell	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4065	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CCR7, CD1A, CD1B, CD1C, CD207, CD209, CD4, CD40, CD80, CD83, CD86, CMKLR1, HLA-DOA, HLA-DOB, HLA-DRA, HLA-DRB1, HLA-DRB5, HLA-DRB6, ITGA4, ITGAM, ITGAX, LY75, NRP1, PDCD1LG2"	Myeloid-derived suppressor cells (mdsc)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4066	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"VWF, CLDN5, CDH5"	NA	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4067	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"RGS5, TPM1, TPM2, CNN1, CALD1"	NA	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4068	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"AXL, JUN, NGFR, WNT5A, FGFR1, NRG1"	AXL NRG1 doubly positive cells	Cell line	Skin	30061114	Genome Res	Single-cell RNA-seq analysis identifies markers of resistance to targeted BRAF inhibitors in melanoma cell populations	SRP127328
4069	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"KRT1, KRT10, DSG1, DSP"	Spinous	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4070	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granular	"LOR, FLG, SPINK5"	Granular	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4071	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"SFRP1, FRZB, DKK3, WIF1"	WNTI	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4072	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"S100A2, APOE, KRT17, APOC1"	Follicular	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4073	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"GJB2, GJB6, ATP1B3, ATP1A1, ATP1B1, ATP5B, FXYD3, VDAC2, SLC25A5"	Channel	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4074	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"PMEL, TYRP1, MLA"	Mel2	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4075	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	CKM	Orbicularis oculi muscle	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4076	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ovarian carcinoma cells	"WFDC2, EPCAM, MCAM"	Ovarian carcinoma cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4077	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pc	RGS5	Pc	Tissue	Skin	31930613	FASEB J	Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing.	NA
4078	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proinflammatory	"CCL19, APOE, CXCL2, CXCL3, EFEMP1"	Proinflammatory	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4079	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"BIRC5, AURKB, PTTG1, TOP2A, MAD2L1, TYMS, CCNB1, CENPF"	Proliferating cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4080	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"HIST1H4C, RRM2, PCLAF, STMN1, PCNA, HMGB2, TK1, H2AFZ, HIST1H1A, CDK1"	Proliferating cells 1	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4081	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Proliferating cells	"CENPF, PTTG1, CCNB1, UBE2C, TOP2A, MKI67, CDC20, CDKN3, HMGB2, KPNA2"	Proliferating cells 2	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4082	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"PTTG1, UBE2C, TK1, CENPF, KIAA0101, NUSAP1, TOP2A, CDK1, NMU, CDKN3, SMC4, KRT5, STMN1, HMGB2, S100A2, CKS2, S100A14, KRT14, HIST1H4C, H2AFZ, HMGB1, TUBA1B, KRT1, MT2A, MT1X"	Proliferating keratinocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4083	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"UBE2C, TOP2A"	Proliferating keratinocytes	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4084	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	SCGB1B2P	Secretory (glandular) cells	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4085	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	SCGB1B2P	Secretory (glandular) cells	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4086	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"APCDD1, ID1, WIF1, COL18A1, PTDGS"	Secretory papillary	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4087	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Secretory cells	"WISP2, SLPI, MFAP5, TSPAN8"	Secretory reticular	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4088	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spinous cells	KRT10	Spinous cells	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4089	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Suprabasal 1	"FABP5, KRT1, LY6D, KRT10, DSP, S100A8, DBI, SAT1, DSG1, DSC2"	Suprabasal 1	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4090	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Suprabasal 2	"DMKN, KRT1, KRT10, APOE, CA2, DSG1, LGALS7B, KRTDAP, LGALS7, IFI27"	Suprabasal 2	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4091	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"BCL6, CD3D, CD3E, CD3G, CD4, CD40LG, CD84, CXCR5, ICOS, IL6R, PDCD1, SLAMF1, STAT3, TNFSF4"	T follicular helper cells (T fh)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4092	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR4, CCR6, CD38, CD3D, CD3E, CD3G, CD4, IL17A, IL17F, IL1R1, IL21, IL22, KLRB1, LINC-ROR, STAT3"	T helper 17 cells (T h17)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4093	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR1, CCR5, CD4, CSF2, CXCR3, DPP4, HAVCR2, IFNA1, IFNGR1, IL2, KLRD1, TNF, TNFSF11"	T helper 1 cells (Th1)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4094	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR3, CCR4, CCR7, CCR8, CD4, CSF2, CXCR4, GATA3, HAVCR1, ICOS, IL10, IL13, IL1R1, IL4, IL5, IL6, PTGDR2"	T helper 2 cells (Th2)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4095	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"AHR, CCR10, CCR4, CCR6, CD3D, CD3E, CD3G, CD4"	T helper 22 cells (Th22)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4096	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, CD4, GATA3, IRF4, STAT6"	T helper 9 cells (th9)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4097	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"PMEL, MLANA, TYR, MITF"	Melanoma	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4098	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vellus hair follicle	"SOX9, KRT6B, SFRP1"	Vellus hair follicle	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4099	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	IGJ	B cells	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4100	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4101	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SFRP2, DPP4, FMO1, LSP1"	Fibroblasts	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4102	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CRABP1, COL11A1, PRG4, ANGPTL7, SFRP4"	Fibroblasts	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4103	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	PDGFRA	Fibroblasts	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4104	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	AIF1	Macrophages_dendritic cells	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4105	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"AIF1, HLA-DRB, CD1C, IL1B"	Macrophages_dendritic cells	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4106	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"DES, ITGA8, NPNT"	Arrector pili-smooth muscle cells	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4107	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4108	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"AADAC, RAMP2"	Fibroblast SLM cluster 1	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4109	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CRABP1, TNN, COL11A1, DPEP1"	Fibroblast SLM cluster 4	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4110	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"CD26, DPP4"	Profibrotic fibroblasts	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4111	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PCOLCE2, CD55"	"Fibroblast SLM 0, 2, and 6"	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4112	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"WIF1, NKD2"	Fibroblast SLM cluster 0	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4113	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PRG4, LINC01133"	Fibroblast SLM cluster 6	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4114	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"FMO1, LSP1, MYOC, IGFBP3 ITM2A, CYGB, C7"	Fibroblast SLM clusters 1 and 5	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4115	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MS4A1, CD79A, CD79B, BLNK"	B cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4116	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"FAP, THY1, COL1A1, COL3A1"	Cancer associated fibroblasts (CAFS)	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4117	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"IL3RA, CLEC4C, NRP1"	Dendritic cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4118	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VWF, CDH5, SELE"	Endothelial cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4119	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CD14, CD68, CD163, CSF1R, FCGR3A"	Macrophages_monocytes	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4120	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"FCGR3A, FCGR3B, NCAM1, KLRB1, KLRB1, KLRC1, KLRD1, KLRF1, KLRK1"	Natural killer (NK) cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4121	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, FOXP3, IL2RA, CTLA4"	Regulatory T cells (Treg)	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4122	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, CD27, CD28"	T cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4123	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, CD27, CD29, CD4"	CD4+ T Cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4124	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, CD27, CD30, CD8B"	CD8+ T Cells	Tissue	Skin	29230012	Nat Commun	Estimation of immune cell content in tumour tissue using single-cell RNA-seq data	GSE72056
4125	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basophils	"CD63, CD69, ENPP3, ICAM1, IL3RA, LAMP1, TLR4"	Basophils	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4126	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PDGFRL, THY1, PDGFRA, MMP2, FAP, PDPN"	Cancer associated fibroblasts (CAFS)	Tissue	Skin	29590628	Nat Commun	Metabolic landscape of the tumor microenvironment at single cell resolution	"GSE72056, GSE103322"
4127	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, FOX3P, CD25"	Tregs	Tissue	Skin	29590628	Nat Commun	Metabolic landscape of the tumor microenvironment at single cell resolution	"GSE72056, GSE103322"
4128	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, FOX3P, CD25"	T helper cells	Tissue	Skin	29590628	Nat Commun	Metabolic landscape of the tumor microenvironment at single cell resolution	"GSE72056, GSE103322"
4129	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	CD8A	CD8 T cells	Tissue	Skin	29590628	Nat Commun	Metabolic landscape of the tumor microenvironment at single cell resolution	"GSE72056, GSE103322"
4130	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myofibroblasts	"PDGFA, MYLK, MCAM, ACTA2, MYL9"	Myofibroblasts	Tissue	Skin	29590628	Nat Commun	Metabolic landscape of the tumor microenvironment at single cell resolution	"GSE72056, GSE103322"
4131	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD141, THBD, CLEC9A, CADM1, IDO1, XCR1, WDFY4, CD141hi DC, DC1 CLEC9A"	CDC1	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4132	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A; THBD, CDC1, CD32"	CDC1/cDC2	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4133	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, FCER1A, FCGR2B, CD1E, CD1A, CD11b, CD11c, SIRPA, CLEC10A"	CDC2	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4134	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"ATAD2, BLM, BRIP1, CASP8AP2, CCNE2, CDC45, CDC6, CDCA7, CHAF1B, CLSPN, DSCC1, DTL, E2F8, EXO1, FEN1, GINS2, GMNN, HELLS, MCM2, MCM4, MCM5, MCM6, MLF1IP, MSH2, NASP, PCNA, POLA1, POLD3, PRIM1, RAD51, RAD51AP1, RFC2, RPA2, RRM1, RRM2, SLBP, TIPIN, TYMS, UBR"	G1/S phase	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4135	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"ANLN, ANP32E, AURKA, AURKB, BIRC5, BUB1, CBX5, CCNB2, CDC20, CDC25C, CDCA2, CDCA3, CDCA8, CDK1, CENPA, CENPE, CENPF, CKAP2, CKAP2L, CKAP5, CKS1B, CKS2, CTCF, DLGAP5, ECT2, FAM64A, G2E3, GAS2L3, GTSE1, HJURP, HMGB2, HMMR, HN1, KIF11, KIF20B, KIF23, KIF2C"	G2/M phase	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4136	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"CD74, HLA-DRA"	Immune cells	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4137	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT5, KRT14, CXCL14, DMKN"	Basal1	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4138	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"KRT5, KRT14, AREG"	Basal3	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4139	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD22, CD40, CD5, CD69, CD70, CD79A, CD79B, CD80, CD86, CD93, FCER2, MS4A1, PAX5, PDCD1, SDC1, TNFRSF13B, TNFRSF13C, TNFRSF9, TNFSF4"	B cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4140	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL6A2, COL6A3, DCN, FAP, THY1"	Cancer associated fibroblasts (CAFS)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4141	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CCR7, CD3D, CD3E, CD3G, CD4, SELL"	CD4 naive T cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4142	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCL3, CCL4, CD2, CD3D, CD3E, CD3G, CD8A, CD8B, CST7, GZMA, GZMB, IFNG, NKG7, PRF1"	Cytotoxic CD8 T cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4143	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CCR7, CD1A, CD1B, CD1C, CD207, CD209, CD4, CD40, CD80, CD83, CD86, CMKLR1, DCX, ITGA4, ITGAM, ITGAX, LY75, NRP1, PDCD1LG2"	Dendritic cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4144	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD34, CDH5, ENG, FLT4, ICAM1, ITGB3, KDR, MCAM, PECAM1, PROCR, SELE, TEK, VCAM1, VWF"	Endothelial cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4145	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"CD24, GYPA, PTPRC"	Erythrocytes	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4146	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"ENPP3, KIT"	Mast cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4147	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	"CD9, GP1BA, ITGA2B, ITGAV, ITGB3, PECAM1, SELP"	Megakaryocytes	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4148	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"B3GAT1, CD244, CD69, IL2RB, ITGA2, ITGAM, ITGAX, KLRA1, KLRB1, KLRD1, KLRK1, NCAM1, NCR1, NKG2, SIGLEC7, SLAMF6, SLAMF7"	Natural killer (NK) cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4149	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stromal cells	"ICAM1, ICAM2, ICAM3, ITGA4, ITGB1, KIT, MADCAM1, MME, MMP1, MMP2, MMP9, PDGFRA, PDGFRB, PECAM1, THY1, TIMP1, TIMP2, TLR1, TLR2, TLR3, TLR4, VCAM1"	Stromal cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4150	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCL3, CCL4, CST7, GZMA, GZMB, IFNG, NKG7, PRF1"	Cytotoxic T cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4151	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Dendritic cells	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4152	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Eosinophils	"CCR3, CD244, CD52, CD53, CXCR3, FCER2, FUT4, IL9R, ITGA4, LAIR1, PTGDR2, S100A9, SIGLEC10, SIGLEC8"	Eosinophils	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4153	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4154	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Dendritic cells	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4155	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4156	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A1	Fibroblasts	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4157	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSAB1	Mast cells	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4158	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	DES	Smooth muscle cells	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4159	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T-lymphocyte cells	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4160	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CTLA4, HAVCR2, LAG3, PDCD1, TIGIT"	Exhausted T cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4161	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granular cells	FLG	Granular cells	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4162	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hair cells	"C1ORF56, LRRC75A, CTNNB1, POSTN, DST, FOXP1, HNRNPH1, TRA2A, TFAP2C, TSPYL1"	Hair follicle (hf) cells	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4163	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hair cells	"CYP1B1, CHI3L1, APOE, MARCKSL1, KRT17, CALML5, SOX4, KRT6B, TUBA1A, GJB6"	Hair follicle (hf) cells	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4164	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hair cells	"CCL2, KRT15, POSTN, CYR61, JUN, CXCL14, ARID5B, DST, E5_HPV78, CXCL2"	Hair follicle (hf) stem cells	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4165	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"CD207, CD1A"	Langerhans cells	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4166	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CD301A"	Dendritic cells	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4167	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CCL3, IL1beta"	Macrophages	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4168	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT10, KRT14"	Residual keratinocytes	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4169	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3, TRAC, TRBC"	Alphabeta T cells	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4170	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CSF2	Inflammatory T cells	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4171	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A"	B cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123817
4172	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FLT3, CLEC4C"	Plasmacytoid dendritic cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123820
4173	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, VWF"	Endothelial cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123824
4174	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A2, MCAM, MYLK"	Myofibroblasts	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123821
4175	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A2, FAP, PDPN"	Cancer-associated fibroblasts	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123822
4176	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"KLRC1, KLRC3"	Natural killer (NK) cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123816
4177	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Antigen-presenting cells (APC)	"HLA-DRA, CD74, HLA-DPB1, HLA-DPA1, HLA-DRB1, CCL17, MMP12, VIM, HLA-DQB1, HLA-DQA1"	Antigen-presenting cells (APC)	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4178	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	"IGFBP3, COL17A1, ASS1, ITGA6, KLK5, KRT5, SLC2A1, ADM, ODC1, CKB"	Basal cells	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4179	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A2, COL3A1, LUM, COL6A2, COL1A1, CCDC80, DCN, LGALS1, CFD, GSN"	Fibroblasts	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4180	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"SPARCL1, ACKR1, IGFBP7, CLDN5, VIM, CLU, SELE, IFI27, TM4SF1, ADIRF"	Immune cells	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4181	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"IL32, CD69, CD52, SRGN, KLRB1, CD3D, ALOX5AP, VIM, LGALS1, S100A4"	Immune cells	Tissue	Skin	31425970	Virology	Single-cell RNA sequencing reveals cell type-specific HPV expression in hyperplastic skin lesions	NA
4182	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT1, KRT14"	Keratinocytes	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4183	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT5, KRT14, KRT5, KRT14, CCL2, IL1R2"	Basal2	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4184	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT5, KRT14"	Keratinocytes	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4185	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT5, KRT14, PC, KI67"	Mitotic	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4186	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	KRT1	Keratinocytes	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4187	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT17, S100A2, KRT14, GJB6, GJB2, KRT5, FXYD3, PERP, RPLP1, RPLP0, RPS2, MGST1, S100A14, DEFB1, SLC25A5, TACSTD2, ATP1B3, SPINT2, COX4I1, CALML5, DAPL1, C19orf33, ATP1A1, CRABP2, KRT15"	Keratinocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4188	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"DMKN, KRT1, KRT2, KRTDAP, KRT10, LY6D, LGALS7B, SFN, PERP, SBSN, S100A14, CALML5, LYPD3, DSP, CSTA, PHLDA2, RHOV, FABP5, TACSTD2, CLDN4, LGALS7, KLK11, TMEM45A, DSG1, AQP3"	Keratinocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4189	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT14, KRT5, KRT15, S100A2, COL17A1, DST, CCL27, SYT8, SERPINB2, AREG, SFN, CA2, PMAIP1, AQP3, ERRFI1, KLF5, TACSTD2, ARL4A, POSTN, SOX15, FGFR3, HOPX, TOB1, KLF4, ATF3"	Keratinocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4190	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"LYPD3, SERPINB2, AQP3, CLDN1, KRT10, SFN, KRT1, SBSN, FGFBP1, KRT2, S100A14, SERPINB5, DSC3, DSP, CLDN4, TACSTD2, IRF6, GRHL3, LGALS7B, CD44, KRTDAP, PKP1, DENND2C, SLC38A2, MTRNR2L12"	Keratinocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4191	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT5, KRT14, TP63, ITGB1, ITGA6"	Keratinocytes undiff	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4192	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"KRT1, KRT10, SBSN, KRTDAP"	Keratinocytes diff	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4193	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	KRT1	Keratinocytes	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4194	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Keratinocytes	"WFDC12, LOR, FLG, CDSN"	Keratinocytes	Tissue	Skin	33157095	J Invest Dermatol	The Whey Acidic Protein WFDC12 Is Specifically Expressed in Terminally Differentiated Keratinocytes and Regulates Epidermal Serine Protease Activity	GSE145059
4195	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CXCL2, CEBOB, CCL3, CCL4"	CCR1 macrophage	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4196	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CCR5, CD14, CD163, CD33, CD68, CD80, CD86, CSF1R, ENG, FCGR1A, FUT4, ITGAL, ITGAM, ITGAX, LAMP2, LILRB4, TLR2, TLR4"	Macrophages	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4197	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	AIF1	Macrophages	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4198	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"FCGR2A, CSF1R"	Macrophages	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123819
4199	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CCR1, MARCO, TREM2, CD163, LILRB4, CSF1R, CD86, TNFSF18, CD80, CD33, FCGR1A, FCGR1B, FCGR2A, LGALS3, MS4A4A, LGMN, CD68, SEPP1, CD14, TXNIP"	Macrophages	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4200	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"RNASE1, CD68, SEPP1"	Macrophages	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4201	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"F13A1, FOLR2, SEPP1"	Marco macrophage (m2-like)	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4202	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	AIF1	Macrophages	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4203	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"TREM2, LGALS3, CTSD"	TREM2 macrophage	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4204	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"TREM2, FABP4, CYP27A1, CHI3L1, NR1H3, MATK, FBP1, A2M, PLA2G7, S100A9"	TREM2 macrophages	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4205	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Adipocytes	"MGST1, APOC1, THRSP, FADS2, CIDEA, FASN, ACSBG1, KRT79, HSD11B1, ALOX15B, APMAP, FADS1, TMEM91, SRD5A1, APOE, ACAT2, CYB5A, ELOVL5, PMVK, MSMO1, FDPS, ATP5G3, LY6E, ECH1, PGRMC1"	Adipocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4206	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CD79A	B cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4207	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, CADM1, XCR1, CD26"	CD141 dentric cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4208	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD2, FceR1, SIRPA"	CD1C dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4209	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD69, cDC2"	CXorf21 dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4210	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, CXorf21, MCOLN2, LAMP3, KIAA0101, FCGR2A, CLEC4C, TLR7, CX3CR1, ITGAD, LILRA4, CD1E, CD1C, CLEC9A, CD1C, CD1E, TLR7, CX3CR1, ITGAD, CD11D, PTPRC, CD45, IL3RA, CD123, CD55, COTL1, CYTIP, CPVL, DDIT4, PPIF"	Dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4211	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CCR7, LAMP3, TUBB2B, LAD1, CCL17, TMCC3, POGLUT1, IL15, MMD, LRRK1, KIF2A, CERS6, IRF4, PLA2G16, SOCS1, TNFRSF11B"	Dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4212	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"ACKR1, SELE, TM4SF1, IFI27, CLDN5, GNG11, CD74, AQP1, FABP4, RAMP3, PLVAP, GIMAP7, ECSCR_duplicate, PECAM1, RBP7, LMCD1, NPDC1, SPARCL1, RAMP2, EGFL7, VWF, IL6, A2M, HLA-DRB1, G0S2"	Endothelial cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4213	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"FABP4, CLDN5, RBP7, IFI27, SLC9A3R2, CD36, A2M, GNG11, RAMP2, AQP1, RGS5, TM4SF1, CD74, PECAM1, BST2, PLVAP, GIMAP7, CLEC14A, SPARCL1, EGFL7, IGF2, HLA-E, ESAM, SOX17, EPAS1"	Endothelial cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4214	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, VWF"	Endothelial cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4215	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"AQP5, CA6, KRT19, KRT18, C2orf82, GAPDH, CLDN10, KRT15, PPP1R1B, SLC12A2, PDCD4, TPD52L1, KRT8, ZG16B, DBI, KRT7, LDHA, NDRG2, TESC, SFRP1, NCALD, ROPN1B, ATP1B1, CHCHD10, ENO1"	Epithelial cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4216	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SFRP2, FBLN1, DCN, COMP, MMP2, COL1A1, COL3A1, COL1A2, WIF1, WISP2, COL6A2, CXCL14, CFD, COL6A1, CTHRC1, PI16, C1R, PTGDS, MFAP4, CTSK, SERPINF1, CFH, MFAP5, GSN, LUM"	Fibroblasts	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4217	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"APOD, CXCL12, CFD, CFH, GSN, CCDC80, PTGDS, MGP, C1S, APOE, IGFBP6, IGFBP3, DCN, SERPING1, GPC3, ADH1B, EFEMP1, C1R, C3, LUM, ABCA8, RARRES2, CXCL14, IGFBP7, SERPINF1"	Fibroblasts	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4218	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COCH, ASPN, TNMD, LUM, DPT, COL1A2, COL1A1, PTGDS, MFAP4, POSTN, CTSK, GPC3, TNN, COL3A1, MEG3, PCOLCE, FIBIN, PRELP, PTN, HTRA1, OGN, SEPP1, SRPX, SPARC, IGFBP5"	Fibroblasts	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4219	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"LTB, IL7R"	Innate lymphoid cells (ILCs)	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4220	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CXCR4, LTB, DUSP2, CD52, IL32, CCL5, CD69, SRGN, SAMSN1, TRAC, CREM, CYTIP, CD3D, DUSP4, PTPRC, CORO1A, TRBC1, RGS1, RGCC, TRBC2, RHOH, CD2, ACAP1, ARHGDIB, CD48"	Lymphocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4221	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD3D, CD79A, NKG7"	Lymphocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4222	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"CXCL8, HLA-DRA, HLA-DPB1, IL1B, CCL3, CXCL3, HLA-DPA1, HLA-DRB1, LYZ, HLA-DQA1, C1QA, HLA-DQB1, CCL3L3, CD74, AIF1, FCER1A, CCL4, GPR183, PLAUR, CCL4L2, SRGN, TYROBP, INSIG1, RNASE1, G0S2"	Macrophages/dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4223	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, TPSB2, CTSG, HPGD, HPGDS, RGS13, MS4A2, IL1RL1, FCER1G, GATA2, FCER1A, CD69, FTH1, VWA5A, SRGN, ANXA1, TYROBP, LAPTM5, BIRC3, SELK, GLUL, PLIN2, ARHGAP18, SGK1, ELF1"	Mast cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4224	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LAMP3, BIRC3, CCR7"	Mature dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4225	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"GPR157, cDC2"	MCOLN2 dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4226	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"HLA-DQA2, ITGAM, ITGAX, CD14, CSF1R, CD68, CD209"	Myeloid cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4227	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4228	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	KIAA0101	Proliferating dendritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4229	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	PMEL	Melanocytes	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4230	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	"PMEL, TYRP1, MLA"	Melanocytes	Tissue	Skin	30355494	Cell Rep	Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution	EGAS00001002927
4231	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	PMEL	Melanocytes	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4232	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"DES, ACTG2, PCP4, MYLK, MYH11, TPM2, CNN1, ACTA2, TAGLN, MYL9, CSRP1, ACTA1, TPM1, FLNA, PPP1R14A, SMTN, PDLIM7, SYNPO2, CALD1, ACTC1, SLMAP, LMOD1, CKB, PLN, NEXN"	Smooth muscle cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4233	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	"PMEL, MLANA"	Melanocytes	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123825
4234	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	"TYRP1, PMEL, MLANA, DCT, MITF, CAPN3, BCAN, PLP1, MFSD12, TYR, TRPM1, PCSK2, GMPR, MCOLN3, SNCA, QPCT, PHACTR1, CYB561A3, NSG1, RAB32, FRZB, CDC42EP3, CD59, APOE, GPNMB"	Melanocytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4235	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	MLANA	Melanocytes	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4236	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	"PMEL, MLANA, TRYP1, DCT"	Melanocytes	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4237	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	PMEL	Melanocytes	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4238	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Melanocytes	"TYR, DCT"	Melanocytes	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4239	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"PTPRC, AIF1"	Dendritic cells	Tissue	Skin	31930613	FASEB J	Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing.	NA
4240	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"VIM, S100A4, FBN1, COL1A1"	Fibroblasts	Tissue	Skin	31930613	FASEB J	Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing.	NA
4241	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	ACTA2	Smooth muscle cells	Tissue	Skin	31930613	FASEB J	Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing.	NA
4242	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Dendritic cells	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4243	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	NRXN1	Neurons	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4244	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"PECAM1, VWF"	Vascular endothelial cells	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4245	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR7, LEF1, SELL, TCF7"	Naive T cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4246	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"PAX6, HES5"	Neuroectoderm-like cells	Organoids	Skin	32494013	Nature	Hair-bearing human skin generated entirely from pluripotent stem cells	GSE147206
4247	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"PLP1, SOX10, PAX3"	CNC-like cells	Organoids	Skin	32494013	Nature	Hair-bearing human skin generated entirely from pluripotent stem cells	GSE147206
4248	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neuroglial cells	"NR2F1, MEF2C, TWIST"	CNC-cell-derived mesenchyme	Organoids	Skin	32494013	Nature	Hair-bearing human skin generated entirely from pluripotent stem cells	GSE147206
4249	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"TH, SLC6A3"	Neuronal cells	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4250	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neutrophils	"ANPEP, C5AR1, CD14, CD33, CEACAM8, CSF3R, CXCR1, CXCR2, FCGR1A, FUT4, ITGAM, ITGAX, MME, PECAM1, SELL, TLR2"	Neutrophils	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4251	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"HBA1, HBA2, HBB"	Erythrocytes	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4252	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"LUM, DCN, VIM, PDGFRA, COL1A2"	Fibroblasts	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4253	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CLDN5, LYVE1, PROX1"	Lymphatic endothelial cells (LECs)	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4254	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"LYZ, AIF1, HLA-DRA, CD68, ITGAX"	Monocyte-derived dendritic cells	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4255	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"SELSE, CLDN5, VWF, CDH5"	Vascular endothelial cells	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4256	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	RGS5	Pericytes	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
4257	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	RGS5	Pericytes	Tissue	Skin	31010835	Clin Cancer Res	Single-Cell Lymphocyte Heterogeneity in Advanced Cutaneous T-cell Lymphoma Skin Tumors	GSE128531
4258	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RERGL, ACTA2, TAGLN, IL6, MT1A, C11orf96, GEM, TPM2, CCL2, MYL9, LBH, DSTN, GADD45B, ADAMTS1, PLN, ZNF331, SORBS2, MYH11, ADIRF, SNCG, NET1, CRISPLD2, GLA, CYCS, EIF4A3"	Pericytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4259	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RGS5, RGS16, NDUFA4L2, C8orf4, MT1A, STEAP4, NR2F2, LHFP, CALD1, EPS8, RERG, TINAGL1, 7-Sep, IGFBP7, LGI4, ANGPT2, CPE, ID4, GEM, CCL2, CRISPLD2, MT2A, RASD1, IL6, CXCL2"	Pericytes	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4260	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"ACTA2, RGS5, PDGFRB"	Pericytes	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4261	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	RGS5	Pericytes	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4262	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pericytes	"RGS5, PDGFRB"	Pericytes	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4263	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	ITGAX	CD11c dendritic cells	Tissue	Skin	32403085	EBioMedicine	Therapeutic potential of lipids obtained from g-irradiated PBMCs in dendritic cell-mediated skin inflammation	NA
4264	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1a	CD1A dendritic cells	Tissue	Skin	32403085	EBioMedicine	Therapeutic potential of lipids obtained from g-irradiated PBMCs in dendritic cell-mediated skin inflammation	NA
4265	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"SLAMF7, IGKC"	Plasma cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123818
4266	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"CCR7, CD1A, CD1B, CD1C, CD4, CD40, CD80, CD83, CD86, CD8A, CLEC4C, CMKLR1, IL3RA, ITGA4, ITGAM, ITGAX, NRP1, PDCD1LG2, TLR9"	Plasmacytoid dentritic cells	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4267	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	NRP1	Plasmacytoid dentritic cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4268	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	"BSG, CCL5, CCR3, CD109, CD151, CD226, CD36, CD46, CD47, CD48, CD63, CD69, CD84, CD9, CNGB1, CSF3R, FCGR2A, FCGR2B, GP1BA, ICAM2, ITGA2, ITGA2B, ITGA6, ITGAV, ITGB1, ITGB3, JAM3, LAMP2, LRRC32, LYN, PECAM1, SELP, SPN, TNFSF14, VEGFA"	Platelet	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4269	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	MS4A1	B cells	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4270	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4271	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL1A1	Fibroblasts	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4272	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TBSAB1	Mast cells	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4273	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	DES	Smooth muscle cells	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4274	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	CD3D	T lymphocytes	Tissue	Skin	32438399	Blood	Genome-wide transcriptome analysis of the STAT6-regulated genes in advanced- stage cutaneous T-cell lymphoma	GSE147947.
4275	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, TFAP2A, HAND1"	Nascent surface ectoderm cell	Organoids	Skin	32494013	Nature	Hair-bearing human skin generated entirely from pluripotent stem cells	GSE147206
4276	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, TFAP2A, WNT6, TP63"	Epidermal progenitors	Organoids	Skin	32494013	Nature	Hair-bearing human skin generated entirely from pluripotent stem cells	GSE147206
4277	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, TFAP2A, SIX1, PAX6, DLX5"	Anterior cell	Organoids	Skin	32494013	Nature	Hair-bearing human skin generated entirely from pluripotent stem cells	GSE147206
4278	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, TFAP2A, SIX1, PAX8, GBX2"	Posterior cranial placodes	Organoids	Skin	32494013	Nature	Hair-bearing human skin generated entirely from pluripotent stem cells	GSE147206
4279	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT5, KRT14, KRT1, KRT10, COL17A1"	Basal	Tissue	Skin	32579974	Cell	Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma	GSE144240
4280	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT5, KRT14, KRT1, KRT10, MKI67"	Cycling	Tissue	Skin	32579974	Cell	Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma	GSE144240
4281	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT5, KRT14, KRT1, KRT10, KRT1"	Differentiating	Tissue	Skin	32579974	Cell	Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma	GSE144240
4282	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"KRT5, KRT14, KRT1, KRT10, VIM, ITGA5"	TSK subpopulation	Tissue	Skin	32579974	Cell	Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma	GSE144240
4283	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR4, CD4, CNGB1, CTLA4, ENTPD1, FOXP3, IKZF2, IL2RA, ISG20, ITGAE, LAG3, LRRC32, NT5E, SELL, TNFRSF18, TNFRSF4"	Regulatory T cells (Treg)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4284	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA"	Regulatory T cells (Treg)	Tissue	Skin	30388455	Cell	A Cancer Cell Program Promotes T Cell Exclusion and Resistance to Checkpoint Blockade	GSE115978
4285	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"JUN, PDGFRA, ASMA"	Adhesion fibroblasts	Tissue	Skin	32792541	Nat Commun	Elucidating the fundamental fibrotic processes driving abdominal adhesion formation	GSE GSE153929
4286	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"PDPN, CD10"	Fibroblasts	Tissue	Skin	32792541	Nat Commun	Elucidating the fundamental fibrotic processes driving abdominal adhesion formation	GSE GSE153929
4287	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	"S100B, MPZ, GPM6B, PLP1, PMP22, CDH19, NRXN1, SCN7A, PCSK2, GFRA3, SEMA3B, PMP2, CADM1, ART3, NTM, HSPA12A, MATN2, CRYAB, SNCA, CD9, TMEM176B, CLU, FXYD1, PRNP, NDRG2"	Schwann cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4288	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Schwann cells	GLDN	Schwann cells	Tissue	Skin	32035984	J Allergy Clin Immunol	Single-cell transcriptome analysis of Human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis	GSE147424
4289	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"DCD, SCGB2A2, MUCL1, SCGB1B2P, PIP, SCGB1D2, AZGP1, KRT19, KRT7, TSPAN8, KRT18, PLA2G2A, OBP2B, AQP5, SCGB2A1, CLDN3, CRACR2B, PPP1R1B, EPCAM, SERHL2, HMGCS2, STARD10, XBP1, DBI, SPINT2"	Secretory cells/epithelial cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4290	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	GFAP	Astrocytes	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4291	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	GFAP	Astrocytes	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4292	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	RGS5	Endothelial cells	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4293	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GABRA1, GABRB2, GAD1, GAD2"	Gabaergic neurons	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4294	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	CSF1R	Microglia cells	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4295	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	VCAN	Oligodendrocyte precursors	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4296	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MOG, MOBP"	Oligodendrocytes	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4297	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MOG, MOBP"	Oligodendrocytes	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4298	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MOG, MOBP"	Oligodendrocytes	Tissue	Skin	32826893	Nat Commun	A single-cell atlas of the Human substantia nigra reveals cell-specific pathways associated with neurological disorders	GSE140231
4299	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD4	CD4 T	Tissue	Skin	30737409	Nat Commun	Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions	GSE124731.
4300	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD8A	CD8a T	Tissue	Skin	30737409	Nat Commun	Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions	GSE124731.
4301	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"NKG2D, NKp46, NKp80"	NK Cells	Tissue	Skin	30737409	Nat Commun	Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions	GSE124731.
4302	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD3G, CD3D, CD3E, CD2, CD8A, GZMA"	CD8 T cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123814
4303	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD3G, CD3D, CD3E, CD2, CD4, FOXP3"	CD4 T cells and Treg cells	Tissue	Skin	31359002	Nat Med	Clonal replacement of tumor-specific T cells following PD-1 blockade.	GSE123815
4304	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Skin	31836271	J Dermatol Sci	"Transcriptome landscape of myeloid cells in Human skin reveals diversity, rare populations and putative DC progenitors"	NA
4305	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	PTPRC	T cells	Tissue	Skin	31930613	FASEB J	Deciphering the functional heterogeneity of skin fibroblasts using single-cell RNA sequencing.	NA
4306	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, DCN"	Suprabasal KC	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4307	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, RGS5, DCN, TPM2"	Pericyte/SM	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4308	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, COL17A1, DCN"	Basal KC	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4309	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, PECAM1"	Endothelium	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4310	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"PTPRC, CD3E"	Lymphocyte	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4311	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, DCN, TPM2"	Fibroblast	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4312	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, PTPRC, FCER1G"	Myeloid	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4313	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, DCN, TPM2, PMEL"	Melanocyte	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4314	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, COL17A1, DCN, TPM2"	Mitotic	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4315	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, DCN"	Suprabasal KC	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4316	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, RGS5, DCN, TPM2"	Pericyte/SM	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4317	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, COL17A1, DCN"	Basal KC	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4318	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, PECAM1"	Endothelium	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4319	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"PTPRC, CD3E"	Lymphocyte	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4320	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, DCN, TPM2"	Fibroblast	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4321	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, PTPRC, FCER1G"	Myeloid	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4322	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, DCN, TPM2, PMEL"	Melanocyte	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4323	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"KRT1, COL17A1, DCN, TPM2"	Mitotic	Tissue	Skin	31959990	Nat Med	Targeted therapy guided by single-cell transcriptomic analysis in drug-induced hypersensitivity syndrome: a case report	GSE132802
4324	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD8, GZMA, PRF1"	Activated cytotoxic T-cell lymphocyte	Tissue	Skin	32296058	Nat Commun	Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma	"GSE78220, SE91061"
4325	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"CD4, IL7R"	CD4 T cells	Tissue	Skin	32296058	Nat Commun	Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma	"GSE78220, SE91061"
4326	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, CTLA-4, GITR, ICOS"	Checkpoint-inhibited T-cell	Tissue	Skin	32296058	Nat Commun	Spatially resolved analyses link genomic and immune diversity and reveal unfavorable neutrophil activation in melanoma	"GSE78220, SE91061"
4327	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3G, C3DE, LCK"	T cells	Tissue	Skin	32327715	Commun Biol	Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming	GSE130973
4328	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Basal cells	KRT14	Basal cells	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4329	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	CLDN5	Endothelial cells	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4330	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	PDGFRA	Fibroblasts	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4331	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	PTPRC	Immune cells	Tissue	Skin	33238152	Dev Cell	A Single-Cell Transcriptomic Atlas of Human Skin Aging.	NA
4332	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"TE-7, CAV1, ACTA2, S100A4"	Fibroblasts	NA	Skin	33311552	Oncogene	Merkel cell carcinoma-derived exosome-shuttle miR-375 induces fibroblast polarization by inhibition of RBPJ and p53	NA
4333	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"RBPJ, TP53"	MCC-induced fibroblasts polarization	NA	Skin	33311552	Oncogene	Merkel cell carcinoma-derived exosome-shuttle miR-375 induces fibroblast polarization by inhibition of RBPJ and p53	NA
4334	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"ACTA2, CXCL2, IL-1beta"	Tumor-associated fibroblasts	NA	Skin	33311552	Oncogene	Merkel cell carcinoma-derived exosome-shuttle miR-375 induces fibroblast polarization by inhibition of RBPJ and p53	NA
4335	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A1, COL1A2, LUM, DCN, VIM, PDGFRA, FBLN1, PCOLCE, PLPP3, SDC2, MXRA8"	Fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4336	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	COL6A5	Lin-cd90+cd39+cd26_ upper dermal fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4337	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"ASPN, POSTN, GPC3, TNN, SFRP1"	Mesenchymal cells	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4338	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SFRP2, ELN, MMP2, QPCT, IGFBP6, PI16, SLPI, WISP2"	A1 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4339	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SFRP2, ELN, MMP2, QPCT, APCDD1, COL18A1, COMP, NKD2"	A2 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4340	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SFRP2, ELN, MMP2, QPCT, ELN, RGCC, SGCA, WIF1"	A3 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4341	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"SFRP2, ELN, MMP2, QPCT, FBN1, PCOLCE2, PRG4, SFRP4"	A4 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4342	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"APOE, C7, CYGB, IGFBP7, CCL2, ITM2A, SPSB1, TNFAIP6"	B1 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4343	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"APOE, C7, CYGB, IGFBP7, CCDC146, CCL19, CD74, TNFSF13B"	B2 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4344	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DKK3, TNMD, TNN, SFRP1, COL11A1, DPEP1, TNMD, WFDC1"	C1 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4345	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DKK3, TNMD, TNN, SFRP1, COCH, CRABP1, FIBIN, RSPO4"	C2 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4346	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DKK3, TNMD, TNN, SFRP1, ASPN, F2R, GPM6B, POSTN"	C3 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4347	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"DKK3, TNMD, TNN, SFRP1, ANGPTL7, APOD, C2orf40, TM4SF1"	C4 fibroblasts	Tissue	Skin	33385399	J Invest Dermatol	Human Dermal Fibroblast Subpopulations Are Conserved across Single-Cell RNA Sequencing Studies	GSE130973
4348	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	M cells	"GP2, SPIB"	M cells	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4349	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amplifying cells	"HELLS, PCNA"	Cycling transit amplifying cells 1	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4350	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Amplifying cells	"MKI67, TOP2A"	Cycling transit amplifying cells 2	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4351	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enterocytes	"FABP1, KRT19"	Enterocytes	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4352	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Goblet cells	"ATOH1, SPINK4"	Goblet cells	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4353	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Paneth cells	"PLA2G2, DEFA6"	Paneth cells	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4354	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Stem cells	NA	Stem cells	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4355	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Enteroendocrine cells	"SOX4, CD24"	Tuft and early enteroendocrine cells	Tissue	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
4356	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"VEGFA, VEGFB, VEGF receptor gene FLT1, KDR"	Endothelial cells	Tissue	Small intestine	32054662	Cold Spring Harb Mol Case Stud	Comparative scRNA-s eq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer	GSE140312
4357	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"COL1A2, RGS5, PDGFRA, PDGFRB"	Fibroblasts	Tissue	Small intestine	32054662	Cold Spring Harb Mol Case Stud	Comparative scRNA-s eq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer	GSE140312
4358	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	VEGFA	Immune cells	Tissue	Small intestine	32054662	Cold Spring Harb Mol Case Stud	Comparative scRNA-s eq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer	GSE140312
4359	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	"DNM1, CADPS, SYT7, SLC18A2"	Synaptic	Tissue	Small intestine	32054662	Cold Spring Harb Mol Case Stud	Comparative scRNA-s eq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer	GSE140312
4360	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	VEGFA	Presynaptic	Tissue	Small intestine	32054662	Cold Spring Harb Mol Case Stud	Comparative scRNA-s eq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer	GSE140312
4361	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	VEGFA	Secretory	Tissue	Small intestine	32054662	Cold Spring Harb Mol Case Stud	Comparative scRNA-s eq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer	GSE140312
4362	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tumor cells	VEGFA	Stressed	Tissue	Small intestine	32054662	Cold Spring Harb Mol Case Stud	Comparative scRNA-s eq Reveals Liver Metastasis-Specific Targets in a Patient with Small Intestinal Neuroendocrine Cancer	GSE140312
4363	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ins	"SOX14, NKX2.2, VSX1, CHX10, SIM1, CALB1"	Ins	Cell line	Spinal cord	32380268	Neuroscience	Characterization of Human iPSC-derived Spinal Motor Neurons by Single-cell RNA Sequencing.	NA
4364	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	NA	"NEUROG2, OLIG2, HB9, ISL1, ISL2, VACTH, S100b, SOX9, PDGFRa, GALC"	NA	Cell line	Spinal cord	32380268	Neuroscience	Characterization of Human iPSC-derived Spinal Motor Neurons by Single-cell RNA Sequencing.	NA
4365	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Npcs	"SOX1, SOX2, MKI67"	Npcs	Cell line	Spinal cord	32380268	Neuroscience	Characterization of Human iPSC-derived Spinal Motor Neurons by Single-cell RNA Sequencing.	NA
4366	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Undi_erentiated stem-like cells	"OCT4, NANOG"	Undi_erentiated stem-like cells	Cell line	Spinal cord	32380268	Neuroscience	Characterization of Human iPSC-derived Spinal Motor Neurons by Single-cell RNA Sequencing.	NA
4367	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Apoptotic cells	"BAX, NGF"	Apoptotic cells	Cell line	Spinal cord	32380268	Neuroscience	Characterization of Human iPSC-derived Spinal Motor Neurons by Single-cell RNA Sequencing.	NA
4368	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Clec9a dcs	"CLEC9A, XCR1"	Clec9a dcs	Tissue	Spleen	29808007	Nat Med	Monocyte-derived IL-1 and IL-6 are differentially required for cytokine-release syndrome and neurotoxicity due to CAR T cells	E-MTAB-6505
4369	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dividing cells	"MKI67, CDK1, TUBB, H2AFZ"	Dividing cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4370	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pdcs	"LILRA, TCF4"	Pdcs	Tissue	Spleen	29808007	Nat Med	Monocyte-derived IL-1 and IL-6 are differentially required for cytokine-release syndrome and neurotoxicity due to CAR T cells	E-MTAB-6505
4371	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tfh	"CXCR5, ICOS, PDCD1"	Tfh	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4372	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, MS4A1, CD79A, CD79B, BLNK"	B cells	Tissue	Spleen	29808007	Nat Med	Monocyte-derived IL-1 and IL-6 are differentially required for cytokine-release syndrome and neurotoxicity due to CAR T cells	E-MTAB-6505
4373	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	FCER1A	CD1C dendritic cells	Tissue	Spleen	29808007	Nat Med	Monocyte-derived IL-1 and IL-6 are differentially required for cytokine-release syndrome and neurotoxicity due to CAR T cells	E-MTAB-6505
4374	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CLEC4E, CD14"	Monocytes	Tissue	Spleen	29808007	Nat Med	Monocyte-derived IL-1 and IL-6 are differentially required for cytokine-release syndrome and neurotoxicity due to CAR T cells	E-MTAB-6505
4375	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"FCGR3A, FCGR3B, NCAM1, KLRB1, KLRC1, KLRD1, KLRF1, KLRK1"	Natural killer (NK) cells	Tissue	Spleen	29808007	Nat Med	Monocyte-derived IL-1 and IL-6 are differentially required for cytokine-release syndrome and neurotoxicity due to CAR T cells	E-MTAB-6505
4376	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3D, CD3E, CD3G, CD27, CD28"	T cells	Tissue	Spleen	29808007	Nat Med	Monocyte-derived IL-1 and IL-6 are differentially required for cytokine-release syndrome and neurotoxicity due to CAR T cells	E-MTAB-6505
4377	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD34, PROM1, HOXA9"	CD34 progenitors	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4378	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, XCR1"	CDC1	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4379	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, CLEC10A"	CDC2	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4380	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"PRDM1, SDC1"	Antibody-producing B cells	Tissue	Spleen	30104629	Nat Immunol	Human germinal center transcriptional programs are de-synchronized in B cell lymphoma	GSE115795
4381	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, PAX5, HLA-DRA"	Follicular B cells	Tissue	Spleen	30104629	Nat Immunol	Human germinal center transcriptional programs are de-synchronized in B cell lymphoma	GSE115795
4382	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"BCL6, IL4R, AICDA, POLH, P2RY8, GNA13"	Gc B cells	Tissue	Spleen	30104629	Nat Immunol	Human germinal center transcriptional programs are de-synchronized in B cell lymphoma	GSE115795
4383	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"NOTCH2, JAM3"	Memory B cells	Tissue	Spleen	30104629	Nat Immunol	Human germinal center transcriptional programs are de-synchronized in B cell lymphoma	GSE115795
4384	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"GZMB, GNLY, PRF1"	Cytotoxic T cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4385	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FCGR3A, TRGV2"	Gamma delta T cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4386	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"APOE, CD5L"	Macrophages	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4387	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD68, CD14"	Macrophages	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4388	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mait-like cells	"SLC4A10, KLRB1"	Mait-like cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4389	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CCR7	Activated dendritic cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4390	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD79A, MS4A1"	B cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4391	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGHD, FCER2, TCL1A, YBX3, IL4R"	Follicular B cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4392	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	PTPRC	Immune cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4393	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"IL7R, AREG, KLRB1, TNFSF13B"	Innate lymphoid cells (ILCs)	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4394	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD27, TNFRSF13B"	Mantle B cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4395	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD14, VCAN, FCN1"	Monocytes	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4396	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCR1, NCAM1, CD160, FCGR3A"	Natural killer (NK) cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4397	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	AICDA	Somatic hypermutation B cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4398	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	LEF1	Naive T cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4399	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD79A, CD19"	B cells	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4400	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	CD34	CD34 progenitors	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4401	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	"HBB, HBA2"	Erythrocytes	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4402	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	IDO1	Myeloid cells	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4403	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	IL7R	Innate lymphoid cells (ILCs)	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4404	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, CTSG"	Mast cells	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4405	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CD1C, SPI1"	Myeloid dendritic cells (MDCS)	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4406	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NKG7, PRF1"	Natural killer (NK) cells	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4407	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasma cells	"SDC1, SBP1, JCHAIN, IGHM, IGHG1"	Plasma cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4408	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"IL3RA, CLEC4C"	Plasmacytoid dentritic cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4409	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Plasmacytoid dentritic cells	"CLEC4C, TCF4"	Plasmacytoid dentritic cells	Organoids	Spleen	32406872	JCI Insight	Identification of pathogenic TRAIL-expressing innate immune cells during HIV-1 infection in Humanized Mouse by scRNA-Seq	GSE148796
4410	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Platelet	"GP9, PF4"	Platelet	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4411	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"FOXP3, IL2RA"	Regulatory T cells (Treg)	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4412	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"Klrg1, Nfil3"	Regulatory T cells (Treg)	Tissue	Spleen	31924477	Immunity	Precursors for Nonlymphoid-Tissue Treg Cells Reside in Secondary Lymphoid Organs and Are Programmed by the Transcription Factor BATF	GSE130884
4413	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD3E, CD4, CD8A"	CD4_CD8 T cells	Tissue	Spleen	31892341	Genome Biol	"scRNA-seq assessment of the Human lung, spleen, and esophagus tissue stability after cold preservation"	PRJEB31843
4414	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mural cells	CD146	Mural cells	Tissue	Synovium	32499639	Nature	Notch signalling drives synovial fibroblast identity and arthritis pathology	GSE145286
4415	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Leukocytes	CD45	Leukocytes	Tissue	Synovium	32499639	Nature	Notch signalling drives synovial fibroblast identity and arthritis pathology	GSE145286
4416	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	CD14	Monocytes	Tissue	Synovium	31594933	Nat Commun	Engineering of Human brain organoids with a functional vascular-like system	"E-MTAB-8225, E-MTAB-8207"
4417	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD68	Macrophages	Tissue	Synovium	32601335	NATURE MEDICINE	Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis	"E-MTAB-8322, E-MTAB-8873"
4418	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	PRG4	Lining fibroblasts	Tissue	Synovium	32499639	Nature	Notch signalling drives synovial fibroblast identity and arthritis pathology	GSE145286
4419	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	THY1	Sublining fibroblasts	Tissue	Synovium	32499639	Nature	Notch signalling drives synovial fibroblast identity and arthritis pathology	GSE145286
4420	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	CD1C	Dendritic cells	Tissue	Synovium	32601335	NATURE MEDICINE	Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis	"E-MTAB-8322, E-MTAB-8873"
4421	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	PDPN	Synovial fibroblasts	Tissue	Synovium	32601335	NATURE MEDICINE	Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis	"E-MTAB-8322, E-MTAB-8873"
4422	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Id2	"ID2, LAMP5, CALB2, PAX6, RELN, SV2C, COL5A2, SEMA3C, FAM19A1, SPOCK1, MYO5B, PDGFD"	Id2_Lamp5	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4423	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Id2	"ID2, LAMP5, CALB2, PAX6, RELN, SV2C, COL5A2, SEMA3C, FAM19A1, SPOCK1, MYO5B, CRH, SFRP1, ID2, LAMA3"	Id2_Lamp5_Crh	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4424	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Id2	"ID2, LAMP5, CALB2, PAX6, RELN, SV2C, COL5A2, SEMA3C, FAM19A1, SPOCK1, MYO5B, LAMA3"	Id2_Lamp5_Nmbr	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4425	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Id2	"ID2, LAMP5, CALB2, PAX6, RELN, SV2C, COL5A2, SEMA3C, FAM19A1, SPOCK1, MYO5B, NOS1, SFRP1, LHX6, SULF1"	Id2_Lamp5_Nos1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4426	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Id2	"ID2, LAMP5, CALB2, PAX6, RELN, SV2C, COL5A2, SEMA3C, FAM19A1, SPOCK1, MYO5B, SYNPR, NCKAP5"	Id2_Nckap5	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4427	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Id2	"ID2, LAMP5, CALB2, PAX6, RELN, SV2C, COL5A2, SEMA3C, FAM19A1, SPOCK1, MYO5B, NXPH1, GRIN2A"	Id2_Pax6	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4428	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L2_3_cux2	"LAMP5, CUX2, PDGFD, FREM3, PRSS12, COL5A2, AGBL1, GPC6, LAMA2, GLIS3"	L2_3_Cux2_Frem3	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4429	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L2_3_cux2	"LAMP5, CUX2, PDGFD, FREM3, PRSS12, COL5A2, LAMP5, PARD3, LTK, DCC"	L2_Cux2_Lamp5	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4430	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L2_3_cux2	"LAMP5, CUX2, PDGFD, FREM3, PRSS12, COL5A2, PRSS12, COBLL1, PLCH1, RORB, DCC, LAMA2, COL5A2"	L3_Cux2_Prss12	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4431	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L4_rorb	"RORB, COBLL1, SCHLAP1, MME, PLCH1, ARHGAP15, ADGRL4, TLL1, TPBG"	L4_Rorb_Arhgap15	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4432	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L4_rorb	"RORB, COBLL1, SCHLAP1, MME, PLCH1, MET, GABRG1, TPBG"	L4_Rorb_Met	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4433	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L4_rorb	"RORB, COBLL1, SCHLAP1, MME, PLCH1, COL22A1"	L4_Rorb_Mme	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4434	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_fezf2	"FEZF2, TLE4, LRRK1, ADRA1A, RORB, LRRK1, ARSJ, CAMK2D"	L5_6_Fezf2_Lrrk1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4435	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_fezf2	"FEZF2, TLE4, LRRK1, ADRA1A, RORB, PCP4, SLIT3"	L5_6_Fezf2_Lrrk1_Pcp4	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4436	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_fezf2	"FEZF2, TLE4, LRRK1, ADRA1A, RORB, SEMA3E, TSHZ2"	L5_6_Fezf2_Lrrk1_Sema3e	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4437	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_fezf2	"FEZF2, TLE4, LRRK1, ADRA1A, RORB, SEMA3A, HTR2C, SEMA5A"	L5_6_Fezf2_Tle4	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4438	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_fezf2	"FEZF2, TLE4, LRRK1, ADRA1A, RORB, ABO, SEMA5A"	L5_6_Fezf2_Tle4_Abo	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4439	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_fezf2	"FEZF2, TLE4, LRRK1, ADRA1A, RORB, HTR2C, IL26, CARD11, KCNIP1"	L5_6_Fezf2_Tle4_Htr2c	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4440	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_fezf2	"FEZF2, TLE4, LRRK1, ADRA1A, RORB, SCUBE1, NR4A2, CDH10, SLC15A5"	L5_6_Fezf2_Tle4_Scube1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4441	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_themis	"THEMIS, NR4A2, PXDN, OPRK1, NR4A2, DCSTAMP, NTNG2"	L5_6_Themis_Ntng2	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4442	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	L5_6_themis	"THEMIS, NR4A2, PXDN, OPRK1, SEMA3A, PXDN, GRIK3"	L5_6_Themis_Sema3a	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4443	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pvalb	"PVALB, NOS1, SULF1, LHX6, KCNS3, CRH, PLEKHH2, LGR5, NOG, UNC5B, NPNT"	Pvalb_Crh	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4444	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pvalb	"PVALB, NOS1, SULF1, LHX6, KCNS3, CRH, PLEKHH2, LGR5, LGR5, MEPE"	Pvalb_Lgr5	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4445	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pvalb	"PVALB, NOS1, SULF1, LHX6, KCNS3, CRH, PLEKHH2, LGR5, CALB1"	Pvalb_Nos1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4446	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pvalb	"PVALB, NOS1, SULF1, LHX6, KCNS3, CRH, PLEKHH2, LGR5, MEPE"	Pvalb_Sulf1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4447	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, HPGD, CALB1, FBN2"	Sst_Calb1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4448	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, THSD7B, SGCD"	Sst_Isoc1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4449	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, GXYLT2, FBN2, CALB1, NOS1"	Sst_Nos1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4450	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, NPY, TENT5A"	Sst_Npy	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4451	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, STK32A, RELN, GXYLT2"	Sst_Stk32a	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4452	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, TAC1, TAC3, GABRG3"	Sst_Tac1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4453	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, TAC3, GABRG3, RELN"	Sst_Tac3	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4454	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sst	"SST, NOS1, SEMA6A, FAM89A, LHX6, GRIK1, TH, GABRG3"	Sst_Th	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4455	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vip	"VIP, TAC3, CALB2, LAMA3, FAM19A1, NPR3, ABI3BP, GRM1"	Vip_Abi3bp	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4456	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vip	"VIP, TAC3, CALB2, LAMA3, FAM19A1, NPR3, HTR2C, CBLN1"	Vip_Cbln1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4457	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vip	"VIP, TAC3, CALB2, LAMA3, FAM19A1, NPR3, CRH"	Vip_Crh	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4458	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vip	"VIP, TAC3, CALB2, LAMA3, FAM19A1, NPR3, NRG1, GGH, SGCZ"	Vip_Nrg1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4459	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vip	"VIP, TAC3, CALB2, LAMA3, FAM19A1, NPR3, KCNJ2, DACH2, PENK, SEMA3C, ADAMTSL1"	Vip_Sema3c	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4460	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vip	"VIP, TAC3, CALB2, LAMA3, FAM19A1, NPR3, TRPM3, SSTR1"	Vip_Sstr1	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4461	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vip	"VIP, TAC3, CALB2, LAMA3, FAM19A1, NPR3, TOX2, LUZP2, TYR"	Vip_Tyr	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4462	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	NEUN	Neuronal nuclei	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4463	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"AQP4, GJB6, FGFR3"	Astrocytes	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4464	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"SLC17A7, SATB2, RORB, CUX2, TLE4, NR4A2, SEMA3C"	Excitatory neurons	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4465	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, GAD2, SOX6, PVALB, SST, VIP, LHX6, NDNF, CALB2, SULF1"	Inhibitory neurons	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4466	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CCTS5, C1QB"	Microglia cells	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4467	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"CSPG4, PDGFRA, VCAN"	Oligodendrocyte precursors	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4468	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"MOG, MAG"	Oligodendrocytes	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4469	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Vascular cells	"DCN, PTGDS, ATP1A2, ITIH5, FLT1"	Vascular cells	Tissue	Temporal cortex	33028830	Nat Commun	Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis	EGAS00001002882
4470	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Early round spermatids	"LDHC, PTTG1, PLK1"	Early round spermatids	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4471	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spermatocytes	"TOP2A, SMC1B, SYCP1, SPO11"	Early spermatocytes	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4472	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Elongating spermatids	"TSSK6, TNP1, LELP1"	Elongating spermatids	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4473	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Late spermatocytes	CETN3	Late spermatocytes	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4474	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Later round spermatids	"SPACA1, LYZL1, TMEM190, ACRV1, NUTM1"	Later round spermatids	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4475	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lc	IGF1	Lc	NA	Testicle	30726734	Cell Rep	The Neonatal and Adult Human Testis Defined at the Single-Cell Level	GSE124263
4476	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Meiotic cells	"MEIOB, SYCP3"	Meiotic cells	Tissue	Testicle	31462300	Clin Epigenetics	High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting	GSE130153
4477	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myoid cells	"MYH11, TPM1, TPM2, TPM4, MYL9, ACTA2, GLI1"	Myoid cells	Tissue	Testicle	30315278	Cell Res	The adult Human testis transcriptional cell atlas	GSE120508
4478	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Germ cells	"VASA, DDX4"	Pan germ cells	Tissue	Testicle	31462300	Clin Epigenetics	High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting	GSE130152
4479	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myoid cells	MYH11	Peritubular myoid cells	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4480	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ptm	PAGLN	Ptm	NA	Testicle	30726734	Cell Rep	The Neonatal and Adult Human Testis Defined at the Single-Cell Level	GSE124263
4481	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spc	SYCP3	Spc	NA	Testicle	30726734	Cell Rep	The Neonatal and Adult Human Testis Defined at the Single-Cell Level	GSE124263
4482	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spermatid	PRM1	Spermatid	Tissue	Testicle	31462300	Clin Epigenetics	High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting	GSE130154
4483	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spermatid	TNP1	Spermatid	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4484	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spermatocytes	SYCP3	Spermatocytes	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4485	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spermatocytes	"ID4, UCHL1, SSX2, LMO4, DMRT1"	Spermatogonia	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4486	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spermatocytes	FGFR3	Spermatogonia	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4487	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spermatocytes	"UTF1, ID4, FGFR3, TCF3"	Spermatogonial stem cell	Tissue	Testicle	30315278	Cell Res	The adult Human testis transcriptional cell atlas	GSE120508
4488	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Spg	DDX4	Spg	NA	Testicle	30726734	Cell Rep	The Neonatal and Adult Human Testis Defined at the Single-Cell Level	GSE124263
4489	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	St	PRM1	St	NA	Testicle	30726734	Cell Rep	The Neonatal and Adult Human Testis Defined at the Single-Cell Level	GSE124263
4490	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"EPAS1, TGFBR2, NOSTRIN, PALMD, POSTN, VWF, PECAM1, NOTCH4, HES1, JAG1, MAML1"	Endothelial cells	Tissue	Testicle	30315278	Cell Res	The adult Human testis transcriptional cell atlas	GSE120508
4491	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"WT1, HLA-B, CD34"	Blood vessel-derived endothelial cells	NA	Testicle	30726734	Cell Rep	The Neonatal and Adult Human Testis Defined at the Single-Cell Level	GSE124263
4492	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Germ cells	"TNP1, PRM2, ZPBP, DAZL, MAGEA4, SPO11, DMRTB1, SYCP3"	Germ cells	Tissue	Testicle	30315278	Cell Res	The adult Human testis transcriptional cell atlas	GSE120508
4493	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Germ cells	"FGFR3, UTF1, RHOXF2, RHOXF2B, MAGEA4, VASA, DDX4, RHOXF1"	Germ cells	Tissue	Testicle	31462300	Clin Epigenetics	High-resolution analysis of germ cells from men with sex chromosomal aneuploidies reveals normal transcriptome but impaired imprinting	GSE130151
4494	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Germ cells	"UTF1, FGFR3, Sycp3, Prm3"	Germ cells	Tissue	Testicle	31928944	Cell Stem Cell	The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty	GSE134144
4495	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"IGF1, ACTA2"	Myeloid cells	Tissue	Testicle	31928944	Cell Stem Cell	The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty	GSE134144
4496	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Germ cells	"IGF1, IGF2, IGFBP5, HSD17B3, CFD, DLK1"	Leydig cells	Tissue	Testicle	30315278	Cell Res	The adult Human testis transcriptional cell atlas	GSE120508
4497	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Germ cells	DLK1	Leydig cells	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4498	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD163, CXCR4, CSF1R, S100A4, TYROBP, LYZ, RGS1, CD14, C1QA"	Macrophages	Tissue	Testicle	30315278	Cell Res	The adult Human testis transcriptional cell atlas	GSE120508
4499	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	HLA-B	Macrophages	NA	Testicle	30726734	Cell Rep	The Neonatal and Adult Human Testis Defined at the Single-Cell Level	GSE124263
4500	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD14	Macrophages	Tissue	Testicle	31928944	Cell Stem Cell	The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty	GSE134144
4501	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	CD63	Macrophages	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4502	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Testicle	31928944	Cell Stem Cell	The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty	GSE134144
4503	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	NOTCH3	Smooth muscle cells	Tissue	Testicle	31928944	Cell Stem Cell	The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty	GSE134144
4504	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CD74, HLA-DRA, B2M"	Endothelial cells	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4505	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"PTGDS, ACTA2, TAGLN, IGFBP7"	Epithelial cells	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4506	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sertoli cells	"SOX9, AMH, PRND, WFDC2, BEX2"	Sertoli cells	Tissue	Testicle	30315278	Cell Res	The adult Human testis transcriptional cell atlas	GSE120508
4507	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sertoli cells	SOX9	Sertoli cells	Tissue	Testicle	31928944	Cell Stem Cell	The Dynamic Transcriptional Cell Atlas of Testis Development during Human Puberty	GSE134144
4508	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sertoli cells	SOX9	Sertoli cells	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4509	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Sertoli cells	"FATE1, DEFB119, CITED1, CLU"	Sertoli cells	Tissue	Testicle	32283711	Cells	"scRNA-seq Profiling of Human Testes Reveals the Presence of the ACE2 Receptor, A Target for SARS-CoV-2 Infection in Spermatogonia, Leydig and Sertoli Cells"	GSE109037
4510	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	VWF	Endothelial cells	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4511	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	FAM129A	Vascular smooth muscle cells	Tissue	Testicle	33173058	Nat Commun	Single-cell analysis of developing and azoospermia Human testicles reveals central role of Sertoli cells	GSE149512
4512	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ctec	"CCL25, GNG11, PRSS16, CTSV, S100A14, PLTP, PSMB11, SCX, PDLIM1, COX7A1, LINC00176, NUPR1, DLK1, HIC1, PIK3R1, GOLM1, PRAP1, GAA, DACT1, PAX1"	Ctec	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4513	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dn(early)	"AC002454.1, CD7, IGLL1, RCBTB2, SMIM24, TPM4, C1orf228, CTHRC1, CKLF, SELL, MLLT11, CDK6, MZB1, SPNS3, IFITM1, CD34, CD82, SERPINB1, LPAR6, ETV5"	Dn(early)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4514	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dn(p)	"IGLL1, PTCRA, FXYD2, ATP6AP1L, AC002454.1, FAM45A, MT2A, PRPS2, JCHAIN, TRDC, IL7R, CDK6, UHRF1, PCGF5, GON4L, SELL, MAD2L2, MAP1A, AC011893.3, ADGRG1"	Dn(p)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4515	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dn(q)	"PTCRA, MAL, JCHAIN, CD1E, ADA, UGT3A2, LRRC28, IL7R, LIMS2, RP11-404O13.5, TRDC, ATP6AP1L, ID1, SELL, GALNT2, AC011893.3, ADGRG1, TFDP2, MSI2, CD7"	Dn(q)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4516	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dp(p)	"SMPD3, CD8A, CD1E, UHRF1, RP11-144L1.4, SH3TC1, CD8B, CD1B, CD1A, ELOVL4, TCF7, SH2D1A, ANAPC15, ACOT7, AQP3, TTK, SMC2, PITPNM2, HNRNPR, CHRNA3"	Dp(p)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4517	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dp(q)	"SH3TC1, CD8B, RAG2, CD1B, ELOVL4, RAG1, LYST, LTB, SMPD3, SIT1, AQP3, CD38, PTCRA, CD8A, NFATC3, CD52, RP11-620J15.3, ARPP21, H1FX, AEBP1"	Dp(q)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4518	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endo	"PLVAP, SPARCL1, RNASE1, NPDC1, TM4SF1, A2M, RAMP2, IFI27, BCAM, AQP1, ACKR1, PECAM1, CD34, EMCN, ESAM, JAM2, IFITM1, CAV1, ADGRL4, EMP1"	Endo	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4519	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epi_gcm2	"PTH, IGFBP5, PTN, GCM2, MAFB, GATA3, VMO1, ATP1A1, ID4, LAPTM4B, NRN1, CASR, ATP6AP2, PVALB, TIMP3, ATP1B1, RALB, CD9, SPTBN1, KANSL1L"	Epi_gcm2	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4520	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ery	"HBG2, HBA2, HBA1, HBB, HBG1, AHSP, BLVRB, HBM, ALAS2, FAM178B, SLC25A37, GYPB, SNCA, GYPC, GYPA, APOC1, KLF1, HBZ, FECH, MYC"	Ery	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4521	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Etp	"ACY3, SPINK2, JCHAIN, AREG, LY86, LST1, FOS, GSN, IQGAP2, NKG7, PRSS2, AIF1, KIAA0125, LTB, CD34, SOX4, PRSS57, DDIT4, LAT2, NR4A2"	Etp	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4522	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Gdt	"TRDC, ANXA1, LAT, SELL, CCR9, SMPD3, FCGRT, TESPA1, SH3BP5, AES, TDG, LIMD2, SEMA4D, MYL6B, CD247, ARL4C, ID3, RTKN2, MLLT11, TRGC2"	Gdt	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4523	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymph	"TFF3, CCL21, MMRN1, TFPI, PROX1, LAPTM5, NTS, NUPR1, FABP5, SDPR, FXYD6, PPFIBP1, CLDN5, RAMP2, EFEMP1, IGFBP7, AKAP12, EGFL7, CD9, MGST2"	Lymph	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4524	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mctec	"CCL2, CCL25, TDGF1, CTSV, TFPI2, P3H2, PLTP, KRT5, HCFC1R1, CYR61, SPHK1, S100A10, PDPN, GJB6, PMP22, HSPB8, TAGLN, RBBP8, MDK, KRT19"	Mctec	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4525	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mgk	"ITGA2B, PLEK, HBD, FCER1A, SERPINB1, RGS18, SDPR, PBX1, CXCL3, C2orf88, GP9, BIN2, LIMS1, C6orf25, P2RX1, CXCL2, MMRN1, MEG3, TPST2, CNST"	Mgk	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4526	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mono	"S100A8, S100A9, S100A12, FCN1, VCAN, S100A4, CTSS, CD52, LYZ, S100A6, SERPINA1, CSTA, PLBD1, MNDA, LTA4H, PLAUR, LGALS1, HCK, SOD2, CFP"	Mono	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4527	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mtec(i)	"CCL19, KRT15, KRT19, FN1, SAA1, KRT14, PTGDS, CLU, KRT5, CH25H, KRT17, IGFBP5, CXCL14, TSC22D1, BST2, CALML3, IFITM3, CPE, APOE, AQP3"	Mtec(i)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4528	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mtec(ii)	"NTHL1, CCL19, KRT17, TYW3, SNCG, VIM, FGF17, CSTA, HLA-DQA1, CALML3, TUBB2B, CCND1, CCDC28B, IL32, HLA-DRA, HLA-DPA1, INSM1, TNFRSF4, NPB, INPP1"	Mtec(ii)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4529	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mtec(iii)	"KRT6A, SLPI, KRT19, SFN, SPINK5, LY6D, DEFB1, PERP, S100A9, CALML5, TACSTD2, AQP3, KRT7, ANXA1, KRT1, KRT10, C19orf33, LGALS3, WFDC2, CXCL17"	Mtec(iii)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4530	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mtec(iv)	"ANXA1, HEPACAM2, ANXA4, KRT18, LRMP, KRT8, RASSF6, FOXI1, EPCAM, BMX, PBXIP1, C11orf53, MGST1, TRPM4, COLCA2, CLDN4, TPM1, AKR1B1, IFI27, FAM3B"	Mtec(iv)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4531	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Nmp	"MPO, PRTN3, LYZ, MS4A3, PLAC8, AZU1, RETN, PRSS57, CLEC11A, RNASE2, FAM46A, RP11-620J15.3, PDIA6, HSP90B1, S100A9, FXYD5, MRPL11, SIVA1, ZSCAN16-AS1, DEFA3"	Nmp	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4532	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Pdc	"GZMB, PLAC8, CCDC50, IRF7, JCHAIN, LILRA4, PLD4, IL3RA, IRF8, UGCG, TPM2, C12orf75, TCF4, SCT, GPR183, SERPINF1, ALOX5AP, RNASE6, LILRB4, FCER1G"	Pdc	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4533	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"UBE2F, DHRS3, MAGEH1, ITM2A, C1orf228, SMS, BACH2, TNFRSF1B, COTL1, SERPINE2, NREP, LCP2, CD247, LAT, ITGAE, VASP, CREM, CD40LG, PHB, CCND2"	T cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4534	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tec(myo)	"NEB, TPM2, NNAT, MYOG, TTN, KLHL41, TNNT3, MYLPF, ACTA1, TNNI2, PDLIM3, CKM, MEG3, ACTC1, MYL1, TNNC2, COX6A2, DES, MYL5, CRYAB"	Tec(myo)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4535	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tec(neuro)	"NNAT, BEX1, CIB2, TUBA1A, CLDN3, PCSK1N, HES6, MAP1B, KIF19, CAMK2B, CLDN4, TESC, MYO6, WFDC2, CD24, GHRH, SCG5, PCBP4, BEX2, STMN1"	Tec(neuro)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4536	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Tfh	"FAM177A1, NDUFV2, IL7R, CCNH, ALG13, FOSB, NR4A2, FLT3LG, EIF4A3, DDIT4, PTGER4, S100A4, HIST1H4C, SC5D, PRNP, FXYD5, FYB, CAMK4, PNPLA2, ZFP36"	Tfh	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4537	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"ANXA1, KLRB1, IL7R, ZBTB16, NOSIP, PLAC8, CARHSP1, CD40LG, RP11-356J5.12, SORL1, HPGD, LTB, BLK, SPOCK2, SGK1, IFITM2, CDC25B, TC2N, TESPA1, C12orf75"	T helper 17 cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4538	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, CPVL, LYZ, C1orf54, DNASE1L3, LGALS2, IRF8, RGCC, BATF3, HLA-DPA1, CST3, S100A10, C1orf162, S100B, CPNE3, HLA-DPB1, CADM1, LMNA, SNX3, HLA-DQB1"	Dendritric cells (DC) 1	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4539	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC10A, HLA-DQA1, HLA-DQB1, LGALS2, JAML, CD1C, GSN, ALDH2, CTSH, MNDA, HLA-DPA1, HLA-DPB1, RNASE6, TYROBP, HLA-DRA, AOAH, SAMHD1, ANXA1, IFITM3, S100A4"	Dendritric cells (DC) 2	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4540	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	NA	Early thymic progenitors	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4541	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD34, SPINK2 , TRDC, RUNX3, IGLL1"	Embryonic ETP	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4542	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"CD34, SPINK2 , TRDC, RUNX3, IGLL2"	Fetal ETP1	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4543	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"PTCRA, RAG1, RAG2, CD3E, CD3G, CD8B, CD1B, TCF7, BCL11B"	Fetal ETP2	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4544	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hematopoietic cells	"PTPRC, CD7"	Hematopoietic cells	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4545	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"CDH5, PECAM1"	Endothelial cells	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4546	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Epithelial cells	"EPCAM, KRT19, KRT8, KRT17, KRT5"	Epithelial cells	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4547	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mesenchymal cells	"PDGFRA, COL1A2"	Mesenchymal cells	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4548	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CLEC10A, C1QA, C1QC"	Macrophages	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4549	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CLEC9A, BATF3"	Dendritic cells	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4550	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"HDC, CPA3, TPSAB1"	Mast cells	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4551	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"RNASE1, MS4A7, C1QA, C1QB, LGMN, SEPP1, C1QC, APOE, SLC40A1, STAB1, FOLR2, DAB2, AGR2, TIMD4, MS4A6A, MAF, A2M, APOC1, F13A1, AIF1"	Macrophages	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4552	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CXCL9, BCL2A1, BASP1, FSCN1, IL12B, KIF2A, TXN, MIR155HG, MARCKSL1, FAM129A, CYB5A, GPR137B, C1orf54, RPS27L, HLA-DRA, C15orf48, NFKBIA, IDO1, ID2, TSPAN13"	Activated dendritic cells (DC) 1	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4553	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CCL17, TMEM176B, CAPG, RASSF4, TMEM176A, FSCN1, HOPX, EBI3, IER3, TYROBP, CFP, S100A6, CRIP1, TNFRSF11B, TVP23A, NEK6, RAB13, GPX4, G0S2, CD70"	Activated dendritic cells (DC) 2	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4554	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"CCL19, LGALS2, MT2A, PPA1, IDO1, TNFAIP2, PLEK, ERICH1, TFPI2, NUB1, C6orf48, CLLU1OS, BATF3, GRSF1, DAPP1, MIS18BP1, UVRAG, SERPINB1, TRAF1, C5orf56"	Activated dendritic cells (DC) 3	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4555	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGHA1, LY86, ADAM28, HLA-DQA1, CRIP1, MS4A1, GPR183, TNFRSF13B, HLA-DRA, BANK1, HLA-DPB1, SMIM14, BCL2A1, HLA-DRB1, BLK, COCH, PLP2, HLA-DPA1, CAPG, SCIMP"	B memory	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4556	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"MS4A1, IGHD, IGHM, TCL1A, BIRC3, HLA-DQB1, FCER2, HLA-DRA, CD79A, CD22, HLA-DQA1, LINC00926, RHOH, LY9, HLA-DRB1, HLA-DPA1, HLA-DQA2, HLA-DRB5, CCR7, BANK1"	B naive	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4557	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"IGHG1, MZB1, IGHG3, IGKC, FKBP11, SSR4, SEC11C, DERL3, JCHAIN, XBP1, IGLC2, CD79A, HERPUD1, IGLC3, IGHA1, IGHG2, PRDX4, IGHG4, IGLL5, ISG20"	B plasma	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4558	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"VPREB3, CD79B, VPREB1, IGLL1, CD24, IGHM, HLA-DRA, GNG7, CD79A, RCSD1, AKAP12, CD9, LAPTM5, PCDH9, TMEM243, SSBP2, CD72, CD38, CD74, TKT"	B pro_pre	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4559	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"GZMK, GZMA, CST7, RGS1, ARID5B, RNF19A, DUSP4, IL10, PRDM1, CKLF, CNN2, SAMSN1, DTHD1, SKAP1, CD6, CXCR4, ETS1, SYTL3, DUSP2, WNK1"	CD4 CTL	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4560	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"PASK, TIGIT, NR3C1, LIMS1, PDCD1, GIMAP4, ARID5B, RP11-455F5.5, CTLA4, CORO1B, TOX2, ICOS, MBP, ST8SIA1, COTL1, PPP1CC, NR4A2, FYB, CD40LG, SNX6"	CD4 PD1	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4561	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"ABLIM1, C1orf228, ID2, RPL17, CAMK4, IFITM2, SELL, GIMAP7, ADD3, DENND2D, SATB1, CHI3L2, IL27RA, ITM2A, CTSL, NDFIP1, THOC7, CYLD, SAMD3, SCML1"	CD4 T cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4562	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"ANXA1, GPR183, KLF2, IL7R, CCR7, AP3M2, RGCC, RPL36A, LTB, CD69, RORA, KLRB1, GSTK1, MAL, SLC2A3, TTC39C, GIMAP7, CCR6, TRAT1, ATP5H"	CD4 TMEM	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4563	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CD8B, CD8A, RP11-291B21.2, CHI3L2, IL7R, GZMM, LRRN3, STK17A, ACTN1, CD7, CLEC2D, CCR7, PIK3IP1, PDE3B, PECAM1, CYTIP, C6orf48, S100B, STAG3, ABLIM1"	CD8 T cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4564	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"NUCB2, CD27, CD8A, LEF1, PTPN7, TRAC, PRKCH, CD28, LCP2, CD2, IKZF1, AQP3, GNG4, SH3BGRL3, LIMD2, ELOVL5, TOX, SH2D1A, CAPZA1, XCL1"	CD8aa(i)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4565	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CTSW, TRGC2, SMC4, CD7, IKZF2, ZNF683, ACTN1, SMIM24, HCST, MME, TRG-AS1, RGS2, RTKN2, PPP2R5C, ID3, TRGC1, CLEC2D, DCXR, ELF1, CPNE7"	CD8aa(ii)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4566	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD8 T cells	"CCL5, CD8B, CD8A, GZMK, NKG7, LYAR, CRTAM, CCL4, RGCC, CST7, ANXA1, PTGER4, DUSP2, CTSW, SAT1, HLA-DPB1, ZFP36L2, HCST, MT2A, COTL1"	CD8 TMEM	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4567	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"C7, DPT, PTN, PTGDS, RBP5, RSPO3, MFAP4, SPARCL1, SRPX, HSPB6, CCL2, FXYD6, NR2F1, DBI, SPRY1, LITAF, DCN, C12orf57, RUNX1T1, RWDD1"	Fibroblasts 1	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4568	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"LUM, MGP, OGN, FN1, IGFBP6, COL1A2, COL14A1, COL3A1, COL1A1, FBN1, DCN, ITM2A, CCDC80, CTSK, WISP2, ID2, SPON2, FSTL1, FBLN2, MFAP5"	Fibroblasts 2	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4569	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	"TMSB15A, TYMS, RARRES2, UBE2C, PTN, KIAA0101, MAD2L1, TK1, SMC2, SMC4, ZWINT, CENPK, RNASEH2A, TOP2A, LSM4, GGH, UBE2T, GINS2, BIRC5, CYR61"	Fibroblasts cycling	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4570	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"IL7R, KLRB1, LST1, CD52, LTB, JAML, TMIGD2, TRDC, S100A4, KRT86, IL4I1, TEX30, TNFRSF25, LINC00299, KIT, SLC16A3, NFKBIA, AREG, ZBTB16, DLL1"	Innate lymphoid cells (ILCs)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4571	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"TPSAB1, CPA3, LMO4, TPSB2, GATA2, HPGDS, IL1RL1, TNFSF10, HDC, PLIN2, SLC18A2, ALOX5AP, AC004791.2, HPGD, PRSS57, SAMSN1, RP11-354E11.2, FCER1G, CNRIP1, CAPG"	Mast cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4572	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"GNLY, TYROBP, KLRD1, NKG7, KLRC1, CMC1, KLRB1, XCL2, KLRF1, HOPX, FCER1G, CTSW, PRF1, MATK, GZMB, CCL3, IL2RB, IFITM2, GZMH, XCL1"	Natural killer (NK) cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4573	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer T (NKT) cells	"GZMK, NKG7, CST7, GZMM, XCL1, SAMD3, CCL5, GIMAP4, ITM2C, CD8A, CLEC2B, IL32, TRGC1, HSPD1, TRDC, LITAF, HSPA1B, CD44, PYHIN1, HSPA1A"	Natural killer T (NKT) cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4574	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"TAGLN, ACTA2, NDUFA4L2, CAV1, TPM2, PPP1R14A, CALD1, MYL9, RGS5, TINAGL1, MT2A, IGFBP7, ISYNA1, TPM1, NOTCH3, MT1A, FABP4, MYLK, PLAC9, MCAM"	Vascular smooth muscle cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4575	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"IL32, FOXP3, PIM2, S100A4, CTLA4, BATF, CARD16, TIGIT, GBP2, PMAIP1, MIR4435-2HG, ICOS, CD7, LINC00152, TNFRSF4, TNFRSF18, AC133644.2, RTKN2, IL2RA, EPSTI1"	Regulatory T cells (Treg)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4576	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CCR7, S100A4, BIRC3, PIK3IP1, CD27, GNG8, FXYD5, IFITM1, DGKA, TNFRSF14, AAK1, CTLA4, TAGAP, RGS1, LEF1, MORC3, FOXP3, NDUFV2, SELL, RGS2"	Regulatory T cells (Treg) (diff)	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4577	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRGC1, TRGC2"	Gd T precursor	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4578	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRAC, TRBC2"	Ab T precursor 1	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4579	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"TRAC, TRBC3"	Ab T precursor 2	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4580	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"NKG7, KLRD1, EOMES, TBX21, CD3G-, TRDC-, TRBC2-, TRAC-, RORC, IL7R, ZBTB16, LTA, LTB"	Innate lymphoid cell (ILC)	Tissue	Thymus	31604687	Immunity	Single-Cell RNA Sequencing Resolves Spatiotemporal Development of Pre-thymic Lymphoid Progenitors and Thymus Organogenesis in Human Embryos	GSE133341
4581	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"SATB1, TOX2, CHI3L2, CCR9, ITM2A, AIF1, RPS4Y1, TRAC, ANKRD44, FYB, ODF2L, EPHB6, CCT2, BANF1, POLR2J3, ANXA6, NUDC, MAD1L1, CD1A, CD1E"	T cells	Tissue	Thymus	32079746	Science	A cell atlas of Human thymic development defines T cell repertoire formation	NA
4582	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Orbital-infiltrating cd34+ ofs	"CD34, COL1A1"	Orbital-infiltrating cd34+ ofs	Tissue	Thyroid	30517642	J Clin Endocrinol Metab	Insights Into Local Orbital Immunity: Evidence for the Involvement of the Th18 Cell Pathway in Thyroid-Associated Ophthalmopathy.	NA
4583	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer cells	FCGR3A	Orbital-infiltrating natural killer cells	Tissue	Thyroid	30517642	J Clin Endocrinol Metab	Insights Into Local Orbital Immunity: Evidence for the Involvement of the Th18 Cell Pathway in Thyroid-Associated Ophthalmopathy.	NA
4584	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD19, CD20"	B cells	Tissue	Thyroid	30517642	J Clin Endocrinol Metab	Insights Into Local Orbital Immunity: Evidence for the Involvement of the Th18 Cell Pathway in Thyroid-Associated Ophthalmopathy.	NA
4585	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	THBD	Dendritic cells	Tissue	Thyroid	30517642	J Clin Endocrinol Metab	Insights Into Local Orbital Immunity: Evidence for the Involvement of the Th18 Cell Pathway in Thyroid-Associated Ophthalmopathy.	NA
4586	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CD68"	Macrophages	Tissue	Thyroid	30517642	J Clin Endocrinol Metab	Insights Into Local Orbital Immunity: Evidence for the Involvement of the Th18 Cell Pathway in Thyroid-Associated Ophthalmopathy.	NA
4587	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibrosis	"COL1A1, COL1A2"	Fibrous matrix	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4588	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Hla-drapos cells	HLA-DRA	Hla-drapos cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4589	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Synovial intimal fbroblasts	"PRG4, CXCL12"	Synovial intimal fbroblasts	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4590	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Synovial subintimal fbroblasts	"WISP2, COL1A1, COL3A1, COL14A1, CXCL12"	Synovial subintimal fbroblasts	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4591	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Synoviocytes	"HLA-DQA1, HLA-DQA2, OLR1, TLR2"	Synoviocytes	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4592	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Progenitor cells	"BIRC5, CENPU, UNE2C, DHFR, STMN1"	Cartilage progenitor cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4593	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibrocytes	CD14	Bood-borne fibrocytes	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4594	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"HLA-DQA1, HLA-DQA2, OLR1, TLR2"	Macrophages	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4595	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD14, CD163, FCGR3A, CD169"	Macrophages	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4596	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Dendritic cells	"FCER1A, CD1C, HLA-DQA1, HLA-DQA2, OLR1, TLR2"	Dendritic cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4597	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Endothelial cells	"TM4SF1, PLVAP"	Endothelial cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4598	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"HLA-DRA, PTPRC"	Immune cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4599	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	TPSAB1	Mast cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4600	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"NCAM1, CD56"	Natural killer (NK) cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4601	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Natural killer (NK) cells	"ZBTB16, PLZF"	Natural killer (NK) cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4602	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Immune cells	"BIRC5, HIST1H4C, BIRC5, CCL3"	Proliferating immune cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4603	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Muscle cells	"RGS5, ACTA2"	Smooth muscle cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4604	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Fibroblasts	HTRA1	Synovial fibroblasts	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4605	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	CD3D	T cells	Tissue	Tibial articular cartilages	32616761	Sci Rep	Synovial cell cross-talk with cartilage plays a major role in the pathogenesis of osteoarthritis	GSE152805
4606	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	CD4 T cells	"BCL6, ASCL2"	CD4 T follicular helper (tfh) cells	Cell line	Tonsil	31072818	J Exp Med	Enhancing WNT Signaling Restores Cortical Neuronal Spine Maturation and Synaptogenesis in Tbr1 Mutants.	"GSE115007, GSE119506, GSE119507"
4607	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CXCR4, AICDA"	DZ B cell	Cell line	Tonsil	32603407	J EXP MED	Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome	NA
4608	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"CD83, BCL2A1"	LZ B cell	Cell line	Tonsil	32603407	J EXP MED	Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome	NA
4609	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	"PRDM1, IRF4"	PBL B cell	Cell line	Tonsil	32603407	J EXP MED	Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome	NA
4610	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	B cells	CCR6	PreM B cell	Cell line	Tonsil	32603407	J EXP MED	Single-cell analysis of germinal-center B cells informs on lymphoma cell of origin and outcome	NA
4611	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Monocytes	"CD45, CD11b, Ly6 C"	Monocytes	NA	Urinary	32363111	ONCOIMMUNOLOGY	Antibody targeting of B7-H4 enhances the immune response in urothelial carcinoma	NA
4612	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	CD68	Myeloid cells	NA	Urinary	32363111	ONCOIMMUNOLOGY	Antibody targeting of B7-H4 enhances the immune response in urothelial carcinoma	NA
4613	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	T cells	"CD4, CD8"	T cells	NA	Urinary	32363111	ONCOIMMUNOLOGY	Antibody targeting of B7-H4 enhances the immune response in urothelial carcinoma	NA
4614	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Ipcs	"EOMES, PPP1R17, NEUROG1"	Ipcs	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4615	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Orgs	"HES, FAM107A"	Orgs	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4616	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Cell cycling cells	"MKI67, CENPF, HMGB2, TOP2A"	Cell cycling cells	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4617	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Choroid plexus cells	RSPO2	Choroid plexus cells	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4618	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Astrocytes	"AQP4, S100B"	Astrocytes	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4619	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"NEUROD2, NEUROD6, SLA"	Excitatory neurons	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4620	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	CRABP1	Immature neurons	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4621	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Neural cells	"GAD1, DCX, DLX5, DLX5, GAD2"	Interneurons	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4622	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	AIF1	Microglia cells	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4623	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Oligodendrocytes	"OLIG1, OLIG2"	Oligodendrocyte progenitors	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4624	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Glia cells	TTR	Radial glia cells	Organoids	Vascularized and functional brain organoid	32401820	PLoS Biol	Vascularized Human cortical organoids (vOrganoids) model cortical development in vivo	GSE131094
4625	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granular cells	"MYB, MPO, LYZ"	Granulocyte monocyte progenitors	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4626	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CDH5, S100A1"	Macrophages 1	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4627	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"SALL1, GLDN"	Macrophages 4	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4628	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Macrophages	"CD45, CD33, CD14"	Macrophages	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4629	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Erythrocytes	CD235a	Erythrocytes	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4630	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Granulocytes	"CD45, CD33, CD66b"	Granulocytes	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4631	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	RORC	Innate lymphoid cells (ILCs)	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4632	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Lymphocyte cells	"CD7, IL7R"	Lymphoid-related	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4633	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Mast cells	"CMA1, CPA3"	Mast cells	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4634	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Megakaryocytes	CD41a	Megakaryocytes	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4635	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Microglia cells	"CX3CR1, SALL1, SPP1, BHLHE41, JUN, FOSB, NR4A1"	Microglia cells	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4636	Animalia	Chordata	Mammalia	Primates	Homidae	Homo	Homo sapiens	Myeloid cells	"MRC1, CD14"	Myeloid cells	Tissue	Yolk sac	32499656	Nature	Deciphering human macrophage development at single-cell resolution	GSE133345
4637	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Purkinje cells	"PCP4, NECAB2, LMO7, CALB1"	Purkinje cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4638	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Cajal-Retzius cells	RELN	Cajal-Retzius cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4639	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Granular cells	"GAD1, GAD2, SLC17A7, PCP4, GJA1, MBP, MOBP, RELN, A2M, NEUROD1, TIAM1"	Granular cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4640	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Neural cells	"ANO3, PTPN5, PCP4, ARPP21, TAC1, ACTN1, HPCA, CA12, ARPP19, PENK, SYT1, CHGB, VSNL1, RBFOX3, SYT4, GABRA6, RTN1, PKIB, CBLN1, CPLX2, GAD2, DRD2, LMO7, CALB1, MBP, RELN, TIAM1, SLC17A7, GAD1, SLC32A1, PCDH8, ADORA2A, GPR6, SATB2"	Neuronal cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4641	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Astrocytes	"ADGRV1, SLC1A2, SLC1A3, GJA1, MT1F, GFAP, AQP4, EMX2, COL5A3, MT3, APOE, SPARCL1, FGFR3, CST3, AGT, CLU, NDRG2, LGI4, HES1, ATP1A4, PTPRZ1, SOX2, RGCC, SLC17A7, MBP, TIAM1, PCP4, PDGFRA, RELN, HLA-DRA, NEUROD1"	Astrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4642	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Neural cells	"NPTX1, ARPP21, CHN1, FBXW7, SYT7, ENC1, SLC17A7, BAIAP2, PHYHIP, OLFM1, SATB2, PCDH8, PCP4, LMO7, MBP, TIAM1, SLC117A7, NECAB2, NEUROD1"	Excitatory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4643	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Neural cells	"CXCL14, GAD2, GAD1, SLC6A1, ZNF385D, ARL4C, SST, CALB2, TAC1, NPY, TAC3, ELAVL2, CRABP1, GNAS, CCK, CENPS-CORT, HOMER3, PVALB, VCAN, KCNMA1, SNTG1, GRIA3, DNER, SLC17A7, PCDH8, MBP, RELN, TIAM1, PCP4, SLC32A1, SLC117A7, PENK, NECAB2, LMO7, CALB1, PDGFRA"	Inhibitory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4644	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Microglia cells	"CD74, C1QB, AIF1, SPP1, C1QC, C3, TYROBP, LAPTM5, CSF1R, HLA-DRA, ITGAX, A2M, TIMP1, SLC17A7, MBP, ITGAM, CX3CR1, PTPRC, TIAM1, PCP4, MOBP, GAD2, TAC1, PENK"	Microglia cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4645	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Oligodendrocytes	"VCAN, PDGFRA, SMOC1, PTPRZ1, BCAN, APOD, GPNMB, COL9A1, NEU4, FERMT1, GPR17, DSCAM, SDC3, SLC17A7, CSPG4, MBP, TIAM1, PCP4, MOG, GAD1, MOBP, TAC1"	Oligodendrocyte progenitors	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4646	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Oligodendrocytes	"PLP1, MAG, PPP1R14A, TF, MOG, CNP, MBP, CNTN2, TMEM144, CLDND1, CLDN11, DBNDD2, APOD, SPP1, QDPR, SLC17A7, MOBP, TIAM1, PCP4, RELN, GAD2, NEUROD1"	Oligodendrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4647	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Neural cells	"TAC1, PCDH8, DRD2, ADORA2A, PENK"	Spindle neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4648	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaca mulatta	Endothelial cells	A2M	Vascular endothelial cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
4649	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	Neural cells	DCX	Nascent migrating neurons	Tissue	Hippocampus	30545855	Science	Spatiotemporal transcriptomic divergence across Human and macaque brain development	NA
4650	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	Monocytes	"Cd14, Cd32, Vcan, Serpinb2, S100a8"	Monocyte-derived cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4651	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	Macrophages	"Cd16, Cd68, Mafb, Cd11c, S100a4"	Macrophages	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4652	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	B cells	"Hladra, Cd20, Bdca1"	B cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4653	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	CD4 T cells	"Cd3d, Cd4"	CD4 T cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4654	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	CD45- cells	"Ybx3, Clu, Klf4, Hes1, Egr1"	CD45- cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4655	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	CD45- cells	"Hba1, Hba2, Hbb"	CD45- cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4656	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	CD8 T cells	"CD8, Cd3d, Cd3g, Gzmk, Cd52, Trac"	CD8 T cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4657	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	Dendritic cells	"Cd40, Ccl22, Ccr7, Flt3"	Dendritic cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4658	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	Myeloid cells	"CD14, CD16, CD11c, CD123, CD1c"	Myeloid cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4659	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	Natural killer (NK) cells	"GranzymeB, Tyrobp, Klrc2, Klrd1"	Natural killer (NK) cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4660	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Macaques	Natural killer (NK) cells	"STAT3, GPR65"	Natural killer (NK) cells	Tissue	Vaginal	32393800	Nat Med	T_ell-inducing vaccine durably prevents mucosal SHIV infection even with lower neutralizing antibody titers	GSE138156
4661	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Brown adipocytes	"CD31, Vecad, Ucp1, Pparg, Pgc1alpha"	Brown adipocytes	Tissue	Adipose	31087498	Aging Cell	Perivascular adipose tissue-derived stromal cells contribute to vascular remodeling during aging	NA
4662	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Preadipocytes	"Icam1, Dlk1, Pparg, Fabp4, Cd36"	Committed preadipocytes	Tissue	Adipose	31023895	Science	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue	GSE128889
4663	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dio	"Inhba, Tnnt1, Col4a4, Tcf21, Pdgfra, Wnt6"	Dio	Tissue	Adipose	33054397	Arterioscler Thromb Vasc Biol	KLF4 (Kruppel-Like Factor 4)-Dependent Perivascular Plasticity Contributes to Adipose Tissue inflammation	NA
4664	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Sca1, CD90, CD146, CD29"	Mesenchymal stem cells	Tissue	Adipose	31087498	Aging Cell	Perivascular adipose tissue-derived stromal cells contribute to vascular remodeling during aging	NA
4665	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"CD29, Sca1, CD34"	Mesenchymal stem cells	Tissue	Adipose	31340667	Arterioscler Thromb Vasc Biol	Single-Cell RNA-Sequencing and Metabolomics Analyses Reveal the Contribution of Perivascular Adipose Tissue Stem Cells to Vascular Remodeling	NA
4666	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	"Msln, Upk3b, Krt8, Krt14, Pparg, Cebpa, Plin1, Fabp5, Car3, Cd36, Adipoq, Retn, Adrb3"	Committed preadipocytes	Tissue	Adipose	30265241	eLife	Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult Mouse.	GSE111588
4667	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T cells	Klrg1	NKT1-A	Tissue	Adipose	32516575	Cell Metab	Distinct iNKT Cell Populations Use IFNgamma or ER Stress-Induced IL-10 to Control Adipose Tissue Homeostasis	GSE142845
4668	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T cells	Klrb1c	NKT1-B	Tissue	Adipose	32516575	Cell Metab	Distinct iNKT Cell Populations Use IFNgamma or ER Stress-Induced IL-10 to Control Adipose Tissue Homeostasis	GSE142845
4669	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Syto16, CD29, Sca1"	Perivascular adipose tissue-derived mesenchymal stem cells	Tissue	Adipose	31340667	Arterioscler Thromb Vasc Biol	Single-Cell RNA-Sequencing and Metabolomics Analyses Reveal the Contribution of Perivascular Adipose Tissue Stem Cells to Vascular Remodeling	NA
4670	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	"Mki67, Pcna, Top2a"	Proliferating cells	Cell line	Adipose	32294409	Immunity	Stromal Cells Covering Omental Fat-Associated Lymphoid Clusters Trigger Formation of Neutrophil Aggregates to Capture Peritoneal Contaminants	GSE102665
4671	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	Mki67	Proliferating cells	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151714
4672	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Cd34, Pdgfra, Ly6a, Thy1"	Canonical mesenchymal progenitors	Tissue	Adipose	31023895	Science	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue	GSE128889
4673	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Pparg, Fabp4, Hsd11b1, Lpl, Pparg, Cebpa, Plin1, Fabp5, Car3, Cd36, Adipoq, Retn, Adrb3"	Committed preadipocytes	Tissue	Adipose	30265241	eLife	Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult Mouse.	GSE111588
4674	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Col6a2, Col5a3, Col15a1, Col4a1"	Collagen-rich progenitors	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154048
4675	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Cd3e, Nrc1"	Lymphocytes	Tissue	Adipose	30343900	Cell	High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy	GSE119352
4676	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"CD34, Sca1"	Endothelial progenitors	Tissue	Adipose	31087498	Aging Cell	Perivascular adipose tissue-derived stromal cells contribute to vascular remodeling during aging	NA
4677	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"dipoq, Plin1, Car3"	Adipocytes	Tissue	Adipose	31023895	Science	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue	GSE128889
4678	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Fn1, Loxl2, Tgfb2, Ccl2, Pparg, Cebpa, Plin1, Fabp5, Car3, Cd36, Adipoq, Retn, Adrb3"	Committed Preadipocytes	Tissue	Adipose	30265241	eLife	Identification of functionally distinct fibro-inflammatory and adipogenic stromal subpopulations in visceral adipose tissue of adult Mouse.	GSE111588
4679	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Plin, GAD1, GAD2, PVALB, SST, VIP, SV2C"	Adipocytes	Tissue	Adipose	31087498	Aging Cell	Perivascular adipose tissue-derived stromal cells contribute to vascular remodeling during aging	NA
4680	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	CD31	Endothelial cells	Tissue	Adipose	31087498	Aging Cell	Perivascular adipose tissue-derived stromal cells contribute to vascular remodeling during aging	NA
4681	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Cnn1, Tagln, Acta2, Myh11"	Smooth muscle cells	Tissue	Adipose	31340667	Arterioscler Thromb Vasc Biol	Single-Cell RNA-Sequencing and Metabolomics Analyses Reveal the Contribution of Perivascular Adipose Tissue Stem Cells to Vascular Remodeling	NA
4682	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Dpp4, Wnt2, Bmp7, Pi16"	Interstitial progenitors	Tissue	Adipose	31023895	Science	Identification of a mesenchymal progenitor cell hierarchy in adipose tissue	GSE128889
4683	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Hp, Ly6c2"	Monocytes	Tissue	Adipose	31428465	Immunometabolism	Netrin-1 Alters Adipose Tissue Macrophage Fate and Function in Obesity	NA
4684	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Folr2, Fcna, Pld3, Lipa, Lcn8, Gpx5, Fcrls, Retnla, Cd209a, Cd81"	Macrophages	Tissue	Adipose	31428465	Immunometabolism	Netrin-1 Alters Adipose Tissue Macrophage Fate and Function in Obesity	NA
4685	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd14, Adgre1"	Macrophages	Tissue	Adipose	32516575	Cell Metab	Distinct iNKT Cell Populations Use IFNgamma or ER Stress-Induced IL-10 to Control Adipose Tissue Homeostasis	GSE142845
4686	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Fcer1g, Ccl6, Mxd1, Tyrobp"	Macrophages	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154050
4687	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	CX3CR1	Macrophages	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151715
4688	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD45, CD11b, F4, F80"	Macrophages	Tissue	Adipose	33054397	Arterioscler Thromb Vasc Biol	KLF4 (Kruppel-Like Factor 4)-Dependent Perivascular Plasticity Contributes to Adipose Tissue inflammation	NA
4689	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	S100a8	Neutrophils	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151713
4690	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5"	Endothelial cells	Cell line	Adipose	32294409	Immunity	Stromal Cells Covering Omental Fat-Associated Lymphoid Clusters Trigger Formation of Neutrophil Aggregates to Capture Peritoneal Contaminants	GSE102665
4691	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Ptprc	Immune cells	Cell line	Adipose	32294409	Immunity	Stromal Cells Covering Omental Fat-Associated Lymphoid Clusters Trigger Formation of Neutrophil Aggregates to Capture Peritoneal Contaminants	GSE102665
4692	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Dpp4, Anxa3, Smpd3, Sema3c"	Pi16 progenitors	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154049
4693	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"FoxP3, CD4"	Regulatory T cells (Treg)	Tissue	Adipose	30343900	Cell	High-Dimensional Analysis Delineates Myeloid and Lymphoid Compartment Remodeling during Successful Immune-Checkpoint Cancer Therapy	GSE119352
4694	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ms4a1, Fcer2a, Bank1, Ighd"	B cells	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154051
4695	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Mmrn1, Egfl7, Cldn5, Kdr"	Endothelial cells	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154053
4696	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Lmod1, Notch3, Myl9"	Smooth muscle cells	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154054
4697	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151712
4698	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Flt3, Ccr7"	DC2-like cells	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151716
4699	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Xcr1	DC1-like cells	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151717
4700	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151711
4701	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Ncmap, Drp2, Plp1, Stmn1"	Schwann cells	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154052
4702	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cdh5	Endothelial cells	Tissue	Adipose	33054397	Arterioscler Thromb Vasc Biol	KLF4 (Kruppel-Like Factor 4)-Dependent Perivascular Plasticity Contributes to Adipose Tissue inflammation	NA
4703	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	ACTA2	Smooth muscle cells	Tissue	Adipose	33054397	Arterioscler Thromb Vasc Biol	KLF4 (Kruppel-Like Factor 4)-Dependent Perivascular Plasticity Contributes to Adipose Tissue inflammation	NA
4704	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Klf45, Oct4"	Stem cells	Tissue	Adipose	33054397	Arterioscler Thromb Vasc Biol	KLF4 (Kruppel-Like Factor 4)-Dependent Perivascular Plasticity Contributes to Adipose Tissue inflammation	NA
4705	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Pde3a"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4706	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Cish"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4707	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Atp5e"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4708	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Cyp2e1"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4709	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Kng2"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4710	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Ryr1"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4711	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Atp5e"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4712	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Plcb1"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4713	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Ucp1, Ppargc1a, Adipoq, Pparg, Dcn"	Adipocytes	Tissue	Adipose	33116305	Nature	snRNA-seq reveals a subpopulation of adipocytes that regulates thermogenesis.	E-MTAB-8562
4714	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ms4a4b, Trbc2, IL7r, Nkg7"	T cells	Cell line	Adipose	32755590	Cell Rep	Single-Cell RNA Profiling Reveals Adipocyte to Macrophage Signaling Sufficient to Enhance Thermogenesis	GSE154047
4715	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd4, Cd8b1"	T cells	Tissue	Adipose	32783918	CELL	TREM2 Modulation Remodels the Tumor Myeloid Landscape Enhancing Anti-PD-1 Immunotherapy	GSE151710
4716	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	Clu	Intestinal stem cells	Tissue	Biliary	31080135	Cell Stem Cell	"YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury"	NA
4717	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Tspan8	Mammary stem cells	Tissue	Biliary	31080135	Cell Stem Cell	"YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury"	NA
4718	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Spp1, Epcam, Krt19, Cldn3"	Tumor cells	Tissue	Biliary	31080135	Cell Stem Cell	"YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury"	NA
4719	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cd24a, Cd44, Prom1, St14"	Immature biliary epithelial cells	Tissue	Biliary	31080135	Cell Stem Cell	"YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury"	NA
4720	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cftr, Slc10a2, Slc4a2"	Mature biliary epithelial cells	Tissue	Biliary	31080135	Cell Stem Cell	"YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury"	NA
4721	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Upk3a, Upk1b, Grhl3"	Umbrella cell	Tissue	Bladder	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4722	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Krt5, Krt14"	Basal cell	Tissue	Bladder	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4723	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Cd14	Immune cells	Tissue	Bladder	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4724	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Dcn, Car3, Scara5"	Mesenchymal cells	Tissue	Bladder	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4725	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, Cd14, Cd86, Cd163, Csf1r, Lyz1, Lyz2, Fcgr3a, Ms4a7, Fcgr4"	Macrophages	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
4726	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79a, Cd79b, Blnk"	B cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
4727	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Cdh1, Krt8"	Epithelial cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
4728	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Xcl1, Ncr1"	Natural killer (NK) cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
4729	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd3e, Cd3g, Cd2"	T cells	PDX	Bladder	32460812	Genome Med	Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient	NA
4730	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Primary decidua zone	Ptgs2	Primary decidua zone	Cell line	Blastoid	31846649	Dev Cell	Self-Organization of Mouse Stem Cells into an Extended Potential Blastoid	"GSE134240, GSE123046"
4731	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Secondary decidua zone	Ki67	Secondary decidua zone	Cell line	Blastoid	31846649	Dev Cell	Self-Organization of Mouse Stem Cells into an Extended Potential Blastoid	"GSE134240, GSE123046"
4732	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Nnat, Apela, Cer1"	Definitive endoderm	Cell line	Blastoid	31846649	Dev Cell	Self-Organization of Mouse Stem Cells into an Extended Potential Blastoid	"GSE134240, GSE123046"
4733	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	Gata2	Mural trophectoderm	Cell line	Blastoid	31846649	Dev Cell	Self-Organization of Mouse Stem Cells into an Extended Potential Blastoid	"GSE134240, GSE123046"
4734	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Cdx2, Essrb, Eomes, Utf1, Ddah1, Pou3f1, Cpne3"	Polar trophectoderm	Cell line	Blastoid	31846649	Dev Cell	Self-Organization of Mouse Stem Cells into an Extended Potential Blastoid	"GSE134240, GSE123046"
4735	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"PDGFRa, Sox17, Gata6, Gata4, Foxa2, Sox7, Rhox5"	Primitive endoderm cells	Cell line	Blastoid	31846649	Dev Cell	Self-Organization of Mouse Stem Cells into an Extended Potential Blastoid	"GSE134240, GSE123046"
4736	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	Krt8	Trophectoderm	Cell line	Blastoid	31846649	Dev Cell	Self-Organization of Mouse Stem Cells into an Extended Potential Blastoid	"GSE134240, GSE123046"
4737	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bone marrow perivascular niche	"Vegf-C, Flt4, Kdr"	ECs	Cell line	Blood	32842144	Blood	VEGF-C protects the integrity of the bone marrow perivascular niche in Mouse	"GSE128464, GSE144420, GSE153339"
4738	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cfu-e	"Lin-c-kit, CD105"	Cfu-e	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4739	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cluster of differentiation	"Cd107a, Cd107b, Cd200, Cd317, Cd63, Cd47"	Cluster of differentiation	Tissue	Blood	31149730	Eur J Immunol	Single-cell transcriptomes of murine bone marrow stromal cells reveal niche-associated heterogeneity	GSE131365
4740	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Col2.3	Col1a1	Col2.3	Cell line	Blood	30971824	Nature	The bone marrow microenvironment at single-cell resolution	GSE108892
4741	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cpc	"MESP1, EOMES, GATA6, GATA4, ISL1, NKX2.5, HAND1, HAND2"	Cpc	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
4742	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	E-cpcs	"GATA6, SOX17, HNF4A, FOXA2"	E-cpcs	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
4743	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Edothelial cells	Ramp2	Edothelial cells	Cell line	Blood	31164147	Epigenetics Chromatin	Robust hematopoietic specification requires the ubiquitous Sp1 and Sp3 transcription factors.	"GSE126497, GSE126501"
4744	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Emergency granulopoietic	"Cebpb, Elane, Prtn3, Ctsg"	Emergency granulopoietic	Tissue	Blood	31406379	Nat Immunol	The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation	GSE112542
4745	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Emergency megakaryocytic stem-like population	"Itga2b, Pf4, Gata1, Isg15, Isg20, Stat1"	Emergency megakaryocytic stem-like population	Tissue	Blood	31406379	Nat Immunol	The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation	GSE112542
4746	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gmp	"Lin-c-kit, CD16, CD32"	Gmp	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4747	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hsc	"Lin-c-kit, Sca1, CD150"	Hsc	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4748	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hspc-1	Ifitm1	HSPC-1	Tissue	Blood	31406379	Nat Immunol	The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation	GSE112542
4749	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hspc-2	"Fos, Junb, Egr1"	HSPC-2	Tissue	Blood	31406379	Nat Immunol	The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation	GSE112542
4750	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Inflammatory cells	"Isg15, Ifit1, Ifit3"	Inflamed cells	Blood	Blood	32406817	eLife	Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature	GSE150166
4751	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lepr	Lepr	Lepr	Cell line	Blood	30971824	Nature	The bone marrow microenvironment at single-cell resolution	GSE108892
4752	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lsk	"Lin-c-kit, Sca1"	Lsk	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4753	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesoderm	"Pdgfra, Tbx6, Brachyury"	Mesoderm	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4754	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mkp	"Lin-c-kit, CD150, CD41"	Mkp	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4755	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mmp4	"Dntt, Cd79a, Lef1, Cd135, Cd48"	MMP4	Tissue	Blood	31406379	Nat Immunol	The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation	GSE112542
4756	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mp cells	Il7r	Mp cells	Blood	Blood	32302378	The Journal of experimental medicine	Physiological expression and function of the MDR1 transporter in cytotoxic T lymphocytes	NA
4757	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mpp	"Lin-c-kit, Sca1"	Mpp	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4758	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mpp2	"Lin-c-kit, Sca1, CD150, CD48"	Mpp2	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4759	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mpp3-4	"Lin-c-kit, Sca1, CD48"	Mpp3-4	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4760	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mural cells	Higd1b	Mural cells	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4761	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cd34, Mycn"	Multipotent progenitors	Blood	Blood	29440259	Genes Dev	Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells.	GSE107527.
4762	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Fos, Junb, Egr1"	LMPP cells	Blood	Blood	29440259	Genes Dev	Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells.	GSE107527.
4763	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Spi1, Ikzf1"	CLP cells	Blood	Blood	29440259	Genes Dev	Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells.	GSE107527.
4764	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cdk1, Cdc20, E2f2."	Pro-B1 cells	Blood	Blood	29440259	Genes Dev	Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells.	GSE107527.
4765	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphoid cells	"Flt3, Dntt"	Lymphoid cells	Cell line	Blood	32783885	Cell Stem Cell	Resolving Fates and Single-Cell Transcriptomes of Hematopoietic Stem Cell Clones by PolyloxExpress Barcoding	"GSE144273, GSE152555"
4766	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	"Dcx, Dlx5, Gad1, Sp8"	Neuroblasts for ob-ins	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4767	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ob immature	"Tshz1, Prokr2"	Ob immature	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4768	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ob-in	"Gsx2, Ascl1, Dlx1, Dlx2, Gad1, Sp8, Sp9, Tshz1, Prokr2"	Ob-in	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4769	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ob-ipcs	"Ascl1, Dlx1, Dlx2, Sp9"	Ob-ipcs	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4770	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Opcs	"Olig1, Pdgfra, Sox8, Sox10"	Opcs	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4771	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteogenic cells	Bglap	Osteogenic cells	Tissue	Blood	31130381	Cell	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia	NA
4772	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pluripotency cells	POU5F1	Pluripotent stem cells	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
4773	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Posterior end of the psm(presomitic mesoderm)	"Wnt , FGF"	Posterior end of the psm(presomitic mesoderm)	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4774	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Adipoq, Lepr"	Pre-adipocytes	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4775	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Cxcl12 Kitl, Fgf7, Il7"	Pre-adipocytes	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4776	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pre-b	"Igll1, Ms4a1"	Pre-b	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4777	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pregm	Lin-c-kit	Pregm	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4778	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Premege	"Lin-c-kit, CD150"	Premege	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4779	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Csf1r, Cd36"	Pre-monocytic cells	Blood	Blood	32422235	Gene	Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia.	"GSE145071, GSE145106, GSE145166, GSE145211, GSE145279, GSE145410"
4780	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Alpl, Postn"	Pre-osteoblasts	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4781	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	Clec11a14	Pre-osteoblasts	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4782	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Primary Wharton	"Procr, Fgd5, Hoxb5"	Primary Wharton	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4783	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Dppa3, Ifitm3, Pou5f1, Sox2"	Primordial germ cells	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4784	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proerythroblasts	"Beta-s, Hbb-b2, Tfrc, Mki67, Stmn1"	Proerythroblasts	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4785	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulopoietic cells	"Ltf, Pglyrp1, Lcn2, Camp, Mki67, Stmn1"	Proliferating granulopoietic cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4786	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Reticulocytes	"Cxcl12, Adipoq"	Reticulocytes	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4787	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	S1 segment of proximal tubule	"Lrp2, Slc5a12"	S1 segment of proximal tubule	Blood	Blood	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
4788	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	S2 segment of proximal tubule	"Lrp2, Slc13a3"	S2 segment of proximal tubule	Blood	Blood	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
4789	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Itgav, Thy1, Eng, Cd200"	Skeletal stem cell	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4790	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Te cells	Klrg1	Te cells	Blood	Blood	32302378	The Journal of experimental medicine	Physiological expression and function of the MDR1 transporter in cytotoxic T lymphocytes	NA
4791	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tfh cells	"Batf, Cd40lg, Icos, Pdcd1"	Tfh1	Blood	Blood	31371561	Science	Identification of a T follicular helper cell subset that drives anaphylactic IgE.	GSE132798
4792	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tfh cells	"Il4, Il13, Gata3"	Tfh13	Blood	Blood	31371561	Science	Identification of a T follicular helper cell subset that drives anaphylactic IgE.	GSE132798
4793	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tri-ipcs	"Hes6, Btg2, Gsx2, Olig2"	Tri-ipcs	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4794	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ve-cad	Cdh5	Ve-cad	Cell line	Blood	30971824	Nature	The bone marrow microenvironment at single-cell resolution	GSE108892
4795	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Tbx21, Lfng, Ccl5, Il12rb1, Gata3, Il1l1, Il5, Il13, Rorc, Il7a, Ahr, Il23r, Tbx21, Ifng, Il21r, Ccl5, Ccl4, Ccl3, Ncr1, Il15r, Eomes, Cxcr3, Il12rb1"	ILC1	Blood	Blood	28902842	Nature	The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation	GSE102299
4796	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Tbx21, Lfng, Ccl5, Il12rb1, Gata3, Il1l1, Il5, Il13, Rorc, Il7a, Ahr, Il23r, Gata3, Lmo4, Areg, Ccl1, Csf2, Il4, Il5, Il13, Cxcl2, Il9, Il1rl1, Il9r, Il17rb, Klrg1"	ILC2	Blood	Blood	28902842	Nature	The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation	GSE102299
4797	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Tbx21, Lfng, Ccl5, Il12rb1, Gata3, Il1l1, Il5, Il13, Rorc, Il7a, Ahr, Il23r, Rorc, Tcf7, Batf3, Il17f, Il17a, Il22, Ncr1, Il1r1, Ahr, Il23r, Cxcr5, Ccr6"	ILC3	Blood	Blood	28902842	Nature	The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation	GSE102299
4798	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Etv2, Cdh5, Pecam1"	Endothelial cells	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4799	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basophils	"Prss34, Mcpt8"	Basophils	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4800	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basophils	"Ccl3, Fcer1a, Mcpt8"	Basophils	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4801	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ebf1, Pax5"	B cells	Blood	Blood	29440259	Genes Dev	Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells.	GSE107527
4802	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ebf1, Cd79b, Igll1"	Committed B-cell progenitors	Blood	Blood	29440259	Genes Dev	Three-step transcriptional priming that drives the commitment of multipotent progenitors toward B cells.	GSE107527.
4803	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Klf1, Epor, Gata1"	Erythrocytes	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4804	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Dntt, Flt3, Rag2"	Lymphoid progenitors	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4805	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	"Gzmb, Cma1"	Mast cells	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4806	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	"Ms4a2, Fcer1a"	Mast cells	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4807	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD19, GFRA2, BST1"	Early B cells	Tissue	Blood	29899037	J Exp Med	Dissection of progenitor compartments resolves developmental trajectories in B-lymphopoiesis	GSE92540
4808	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD20, CD19, KIT"	LP cells	Tissue	Blood	29899037	J Exp Med	Dissection of progenitor compartments resolves developmental trajectories in B-lymphopoiesis	GSE92541
4809	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD21, CD19, KIT"	Pro_B cells	Tissue	Blood	29899037	J Exp Med	Dissection of progenitor compartments resolves developmental trajectories in B-lymphopoiesis	GSE92542
4810	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Cd74, Cd83"	"B cells, mature"	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4811	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Vpreb1"	"B cells, immature"	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4812	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Vpreb3"	Pre-B cells	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4813	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Nkg7, Il2rb, Thy1"	Natural killer (NK) cells	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4814	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd7	T cells	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4815	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cell cycling cells	"Mki67, Ccnb2, Cdc20"	Cell cycling cells	Tissue	Blood	31406379	Nat Immunol	The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation	GSE112542
4816	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Chondrocytes	"Acan, Col2a1"	Chondrocytes	Tissue	Blood	31130381	Cell	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia	NA
4817	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Chondrocytes	"Acan, Sox9"	Chondrocytes	Tissue	Blood	31871321	Nat Cell Biol	"Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	GSE122467
4818	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Chondrocytes	"lhh, Sfrp5, Anln"	Chondrocytes	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4819	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Dntt, Rag1, Rag2"	Early pro-b cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4820	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Ltf, Pglyrp1, Lcn2, Camp"	Granulocytes	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4821	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Ltf, Camp, Ngp, S100a11, Pglyrp1, Ccl3, Fcer1a, Mcpt8"	Basophils	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4822	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	Lin-KitSca1	Hematopoietic stem cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4823	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Chchd10, Cd79a, Cd79b, Cd19, Mki67, Stmn1"	Immature B cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4824	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Kirb1a, Kirb1b, Kirb1c, Ncr1"	Immature Natural killer (NK) cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4825	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Pax5, Rag1, Rag2"	Late pro-b cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4826	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Cd19, Ms4a1, Cd74"	Mature B cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4827	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cd68, Mpeg1, Itgam, Emr1, Fcgr3"	Monocytes	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4828	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Kirb1a, Kirb1b, Kirb1c, Ncr1"	Natural killer (NK) cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4829	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Mki67, Stmn1"	Pre-natural killer (NK) cell	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4830	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ifngr1, Cxcr4, Fxyd5, S1pr1, Clsn3, Tm2d2, Pear1, B4galt1, Emb"	Natural killer (NK) cells	Blood	Blood	30413361	Immunity	High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NK Cell Subsets in Humans and Mouse	GSE119563
4831	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cycling cells	Mki67	Cycling cells	Blood	Blood	32406817	eLife	Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature	GSE150166
4832	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ccl3, Cxcr6, Gzmb"	Th1 cell	Blood	Blood	30487586	Nat Commun	Single-cell RNA sequencing unveils an IL-10-producing helper subset that sustains humoral immunity during persistent infection	GSE111027
4833	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cxcr5, Tcf7, Sostdc1"	Tfh cell	Blood	Blood	30487586	Nat Commun	Single-cell RNA sequencing unveils an IL-10-producing helper subset that sustains humoral immunity during persistent infection	GSE111027
4834	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD19	B cells	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4835	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	CD4	CD4 T cells	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4836	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	CD8	CD8 T cells	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4837	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	ter119	Erythrocytes	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4838	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"SSC, Gr1"	Granulocytes	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4839	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"SSC, CD11b"	Monocytes	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4840	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	CD11b	Myeloid cells	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4841	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Siglech, Xcr1"	Dendritic cells	Blood	Blood	31689243	JCI insight	CD47 blockade augmentation of trastuzumab antitumor efficacy dependent on antibody-dependent cellular phagocytosis	GSE139492
4842	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	NK1.1	Natural killer (NK) cells	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4843	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	Fgd5	Hematopoietic stem cells	Cell line	Blood	30561434	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4844	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd19, Cr2, Fcer2a, CD22, Ms4a1, CD86, H2-Ab1, Cd24a, Cd38, CD40"	B cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
4845	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Itgax, Thbd, Cd38, Cd209a, Cd74, Flt3, H2-Aa, H2-Eb1, Ifi30, Napsa, Itgb7, Syngr2, Clec10a, Ahr, Tlr13, CD24a"	Dendritic cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
4846	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cd14, Cd68, Adgre1, Lgals3, Apoe, Mafb, Fcgr3, Ly6e, H2-Aa, H2-Eb1"	Monocytes	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
4847	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Klrb1c, Klrd1, Klrc1, Klrk1, Itga2, Gzma, Gzmb, Prf1"	Natural killer (NK) cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
4848	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	"Sox11, Neurod6, Pou3f1, Satb2"	Differentiating pyns	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4849	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Car4, H19, Trh"	Early endoderm cells	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4850	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Ly6a, Cd34, Thy1, Mfap5, Clec3b"	Early mesenchymal progenitors	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4851	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Cd34	Early progenitor cells	Cell line	Blood	31164147	Epigenetics Chromatin	Robust hematopoietic specification requires the ubiquitous Sp1 and Sp3 transcription factors.	"GSE126497, GSE126501"
4852	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Sox1, Pax6, Pou3f1"	Ectoderm cells	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4853	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Gm2694, Mir124-2hg"	Ectoderm cells	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4854	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Sox17, Epcam, Foxa1, Foxa2"	Endoderm cells	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4855	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	SOX17	Endoderm cells	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
4856	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cd34, Vwf"	Endothelial progenitors	Tissue	Blood	31934494	Bone Res	Focal adhesion protein Kindlin-2 regulates bone homeostasis in Mouse	NA
4857	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Gata2, Gata1, Klf1, Epor, Hba-a2"	Mature erythrocytes	Blood	Blood	30890159	Genome Biology	GAPA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells	NA
4858	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Irf8, Csf1r, Ctsg"	Monocytes	Blood	Blood	30890159	Genome Biology	GAPA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells	NA
4859	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eosinophils	Prss57	Eosinophils	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4860	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eosinophils	"Prg2, Prg3"	Eosinophil progenitors	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4861	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eosinophils	CD170	Eosinophils	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
4862	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eosinophils	SiglecF	Eosinophils	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
4863	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"SNAIL1, SNAIL2, MMP2, VIM"	Epithelial mesenchymal transition	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
4864	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythroblasts	"Beta-s, Hbb-b2, Bpgm"	Erythroblasts	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4865	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Cd45, Cd71, Cd71"	Erythroid	Tissue	Blood	31871321	Nat Cell Biol	"Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	GSE122467
4866	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cdh5	Bone marrow-derived endothelial cells (BMECS)	Tissue	Blood	31130381	Cell	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia	NA
4867	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	S100a4	Fibroblasts	Tissue	Blood	31130381	Cell	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia	NA
4868	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Lepr, Cxcl12"	Mesenchymal stromal cells	Tissue	Blood	31130381	Cell	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia	NA
4869	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Vcam1, Pdgfrb, LepR, Cdh11"	Bone marrow stromal cells	Tissue	Blood	31149730	Eur J Immunol	Single-cell transcriptomes of murine bone marrow stromal cells reveal niche-associated heterogeneity	GSE131365
4870	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Hba-X	Erythrocytes	Cell line	Blood	31164147	Epigenetics Chromatin	Robust hematopoietic specification requires the ubiquitous Sp1 and Sp3 transcription factors.	"GSE126497, GSE126501"
4871	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	Gp1bb	Megakaryocytes	Cell line	Blood	31164147	Epigenetics Chromatin	Robust hematopoietic specification requires the ubiquitous Sp1 and Sp3 transcription factors.	"GSE126497, GSE126501"
4872	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	"Flt3, Kit, Mpeg1, Itgb2, Ahnak, Pld4, Cd68"	Granulocyte monocyte progenitors	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4873	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Kit, Stmn1, Mki67, Gpr56, Cd34"	Hematopoietic precursor cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4874	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Kit, Gpr56, Cd34, Pdzk1ip1, Ly6a"	Quiescent HSC-enriched fraction	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4875	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Kit, Gpr56, Cd34, Stmn1, Mki67, Cd48, Flt3, Cd34"	HSCs__he MPPs	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4876	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Kit, Gpr56, Cd34, Tgm2, Klf1, Treml1"	Megakaryocyte erythrocyte progenitor (MEP)	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4877	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Kit, Gpr56, Cd34, Dntt, Ly6c2, Ctsg, Tyrobp, Cd69"	Common lymphocyte progenitor lineage (CLP	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4878	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Ly6e, Lmo2, Hoxa9, Runx1, Cd34, Gfi1, Egfl7, Myl10, Ctsg, Prtn3"	Hematopoietic stem and progenitor cells	Cell line	Blood	33302977	J Hematol Oncol	Trajectory of chemical cocktail_induced neutrophil reprogramming	NA
4879	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"car4, Cdkn1c, Ttr"	Hepatic progenitors	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
4880	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Camp, Ccl6, Ly6c2, Lgals1"	Immature monocytes	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
4881	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Vpreb3	B cells	Tissue	Blood	31439836	Nat Commun	B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis.	NA
4882	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	CD209a	Dendritic cells	Tissue	Blood	31439836	Nat Commun	B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis.	NA
4883	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Hba-a2	Erythrocytes	Tissue	Blood	31439836	Nat Commun	B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis.	NA
4884	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	Ly6g	Granulocyte	Tissue	Blood	31439836	Nat Commun	B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis.	NA
4885	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Csf1r	Monocytes	Tissue	Blood	31439836	Nat Commun	B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis.	NA
4886	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	CD34	Stem cell	Tissue	Blood	31439836	Nat Commun	B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis.	NA
4887	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Tnn, Ostn"	Late mesenchymal progenitors	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4888	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	NA	Exhausted CD8+ T cells	Tissue	Blood	31527834	Nat Immunol	PTPN2 regulates the generation of exhausted CD8 + T cell subpopulations and restrains tumor immunity	GSE134413
4889	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	NA	Exhausted CD8+ T cells	Tissue	Blood	31527834	Nat Immunol	PTPN2 regulates the generation of exhausted CD8 + T cell subpopulations and restrains tumor immunity	GSE134413
4890	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	NA	Exhausted CD8+ T cells	Tissue	Blood	31527834	Nat Immunol	PTPN2 regulates the generation of exhausted CD8 + T cell subpopulations and restrains tumor immunity	GSE134413
4891	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	NA	Exhausted CD8+ T cells	Tissue	Blood	31527834	Nat Immunol	PTPN2 regulates the generation of exhausted CD8 + T cell subpopulations and restrains tumor immunity	GSE134413
4892	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	NA	Exhausted CD8+ T cells	Tissue	Blood	31527834	Nat Immunol	PTPN2 regulates the generation of exhausted CD8 + T cell subpopulations and restrains tumor immunity	GSE134413
4893	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Hey1	Lineage committed progenitors	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4894	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	NA	Blood	31551511	Scientific Reports	"Comparative transcriptomics between species attributes reactogenicity pathways induced by the capsular group B meningococcal vaccine, 4CMenB, to the membrane-bound endotoxin of its outer membrane vesicle component"	GSE132199
4895	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD79A	B cells	Blood	Blood	31574155	Gigascience	IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.	GSE60361.
4896	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	PPBP	Megakaryocytes	Blood	Blood	31574155	Gigascience	IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.	GSE60361.
4897	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	MS4A7	Monocytes	Blood	Blood	31574155	Gigascience	IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.	GSE60361.
4898	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	MS4A7	Monocytes	Blood	Blood	31574155	Gigascience	IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.	GSE60361.
4899	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	GNLY	Natural killer (NK) cells	Blood	Blood	31574155	Gigascience	IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.	GSE60361.
4900	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD45, Adgre1, F4, F80, Lyz2"	Bone marrow_derived macrophage and adipose tissue macrophages )	Tissue	Blood	30990466	JCI Insight	Single cell transcriptomics based-MacSpectrum reveals novel macrophage activation signatures in diseases.	"GSE117176, GSE32575, GSE54350,"
4901	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ahnak, Mpeg1, Emr1, Cd68, Ly6d, Irf8, Cd74"	Bone marrow macrophages	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4902	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	NA	CD8 T cells	Blood	Blood	31606264	Immunity	TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision	GSE131535
4903	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	NA	CD8 T cells	Blood	Blood	31606264	Immunity	TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision	GSE131535
4904	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD45, Adgre1, F4, 80, Lyz2, Nos2, CD86, Tnf"	M1	Tissue	Blood	30990466	JCI Insight	Single cell transcriptomics based-MacSpectrum reveals novel macrophage activation signatures in diseases.	"GSE117176, GSE32575, GSE54350,"
4905	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD45, Adgre1, F4, F80, Lyz2, Ym1, Arg1, Fizz-1, Mgl2"	M2	Tissue	Blood	30990466	JCI Insight	Single cell transcriptomics based-MacSpectrum reveals novel macrophage activation signatures in diseases.	GSE117176
4906	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mrc1, Mrc2, Arg1, Arg2"	M2 macrophages	Blood	Blood	31689243	JCI insight	CD47 blockade augmentation of trastuzumab antitumor efficacy dependent on antibody-dependent cellular phagocytosis	GSE139492
4907	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Cx3cr1, Apoe"	Macrophages	Blood	Blood	31689243	JCI insight	CD47 blockade augmentation of trastuzumab antitumor efficacy dependent on antibody-dependent cellular phagocytosis	GSE139492
4908	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79b"	B cells	Blood	Blood	31689243	JCI insight	CD47 blockade augmentation of trastuzumab antitumor efficacy dependent on antibody-dependent cellular phagocytosis	GSE139492
4909	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Itgam, Cd14, Csf1r"	Myeloid cells	Blood	Blood	31689243	JCI insight	CD47 blockade augmentation of trastuzumab antitumor efficacy dependent on antibody-dependent cellular phagocytosis	GSE139492
4910	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Cd8a, Cd4, Cd3e, Cd3g, Foxp3, Nkg7, Cd7"	Natural killer T (NKT) cells	Blood	Blood	31689243	JCI insight	CD47 blockade augmentation of trastuzumab antitumor efficacy dependent on antibody-dependent cellular phagocytosis	GSE139492
4911	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Ms4a7	Macrophages	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4912	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd14, Ly6c2"	Maturing macrophages	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4913	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	NA	Macrophages	Blood	Blood	32703960	Sci Rep	Trajectory analysis quantifies transcriptional plasticity during macrophage polarization	NA
4914	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	NA	Macrophages	Blood	Blood	32703960	Sci Rep	Trajectory analysis quantifies transcriptional plasticity during macrophage polarization	NA
4915	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD11b, Ly6Chi CCR2hi monocyte"	Cluster 1	Tissue	Blood	31803182	Front Immunol	Defining the Signature of VISTA on Myeloid Cell Chemokine Responsiveness.	NA
4916	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD12b, Patrolling Ly6C_ CX3CR1hi Nr4a1 monocyte"	Cluster 2	Tissue	Blood	31803182	Front Immunol	Defining the Signature of VISTA on Myeloid Cell Chemokine Responsiveness.	NA
4917	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD13b, MHC-II"	Clusters 3	Tissue	Blood	31803182	Front Immunol	Defining the Signature of VISTA on Myeloid Cell Chemokine Responsiveness.	NA
4918	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD14b, MHC-II"	Clusters 5	Tissue	Blood	31803182	Front Immunol	Defining the Signature of VISTA on Myeloid Cell Chemokine Responsiveness.	NA
4919	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD15b, IFN-I, CD209a, MHC-II"	Cluster 4	Tissue	Blood	31803182	Front Immunol	Defining the Signature of VISTA on Myeloid Cell Chemokine Responsiveness.	NA
4920	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ahnak, Mpeg1, Emr1, Cd68"	Mature monocytes	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4921	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Camp, Ccl6, Clec4d, Ly6c2"	Mature monocytes	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
4922	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"Pf4, Itga2b, Gp1bb"	Megakaryocyte progenitors	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4923	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Mcam, Nes, Cxcl12"	Mesenchymal progenitors	Tissue	Blood	31934494	Bone Res	Focal adhesion protein Kindlin-2 regulates bone homeostasis in Mouse	NA
4924	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam, Sca1, Ly6a"	Arterial Ecs	Tissue	Blood	31871321	Nat Cell Biol	"Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	GSE122467
4925	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam, Emcn"	Sinusoidal ECs	Tissue	Blood	31871321	Nat Cell Biol	"Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	GSE122467
4926	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Tagln, Acta2"	Smooth muscle cells	Tissue	Blood	31871321	Nat Cell Biol	"Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	GSE122467
4927	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Irf8, Csf1r, Ly86"	Monocyte progenitors	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4928	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Kit, Sca1, Cd150"	Multipotent progenitors (mpps)	Blood	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4929	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Lin-c-kit	Myeloid progenitors	Tissue	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4930	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Kit	Myeloid progenitors	Blood	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4931	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Kit, Sox4, Camp, Ltf, Ly6c2, Lgals1"	Myeloid progenitors	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
4932	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ccr7, Lef1, Sell, Dapl1, Igfbp4"	Naive T cells	Blood	Blood	33139915	Nat Immunol	Intravenous nanoparticle vaccination generates stem-like TCF1 + neoantigen-specific CD8 + T cells	GSE158240
4933	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Blood	Blood	32075963	Nat Commun	Immune checkpoint modulation enhances HIV-1 antibody induction	PRJNA556211
4934	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	Cd4	CD4 T cells	Blood	Blood	32075963	Nat Commun	Immune checkpoint modulation enhances HIV-1 antibody induction	PRJNA556211
4935	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	Cd8a	CD8 T cells	Blood	Blood	32075963	Nat Commun	Immune checkpoint modulation enhances HIV-1 antibody induction	PRJNA556211
4936	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"SHH, ZEB1, ZEB2, NCAM2"	Neural differentiation	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
4937	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ly6g, Ltf, Mmp9"	Neutrophils	Blood	Blood	31689243	JCI insight	CD47 blockade augmentation of trastuzumab antitumor efficacy dependent on antibody-dependent cellular phagocytosis	GSE139492
4938	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Elane, Gfi1, Cebpe"	Neutrophil progenitors	NA	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4939	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Elane, Prtn3, Mpo"	Neutrophils	Blood	Blood	29588278	Blood	A single cell hematopoietic landscape resolves eight lineage trajectories and defects in Kit mutant Mouse	"GSE106973, GSE107727"
4940	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Mmp9, Srgn, Cxcr2"	Maturing neutrophils	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4941	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Elane, Cepbe, Gfi1"	Neutrophils	Blood	Blood	30890159	Genome Biology	GAPA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells	NA
4942	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ngp, Lcn2, Lrg1, S100a8, Mmp8, Fpr1, Ltb4r"	Neutrophils	NA	Blood	31551511	Scientific Reports	"Comparative transcriptomics between species attributes reactogenicity pathways induced by the capsular group B meningococcal vaccine, 4CMenB, to the membrane-bound endotoxin of its outer membrane vesicle component"	GSE132199
4943	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Fpr2, Orm1"	Neutrophils	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4944	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	S100a8	Neutrophils	Blood	Blood	32668198	Cell	The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid- Type I IFN Signaling Axis	GSE150387
4945	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Elane, Mpo"	Neutrophils	Blood	Blood	32929473	Blood	RUNX1 and CBFbeta-SMMHC transactivate target genes together in abnormal myeloid progenitors for leukemia development	GSE152573
4946	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Camp, Ltf, Ly6c2"	Immature neutrophils	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
4947	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Camp, Ccl6, Ly6c2, Lgals1, Cx3cr1, Apoe"	Mature neutrophils	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
4948	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a8, S100a9, Cxcr2, Csf3r, S100a9, Il1b, Tnf, Ccl3, Acod1, G0s2"	Neutrophils	Blood	Blood	32978242	Sci Immunol	The myeloid type I interferon response to myocardial infarction begins in bone marrow and is regulated by Nrf2-activated macrophages	GSE157244
4949	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Mpo, Elane, Ctsg"	Neutrophils	Blood	Blood	33147438	Mol Cell	Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mouse and Humans	GSE157832
4950	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, Olig2, Pdgfra, Sox10"	Oligodendrocytes	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4951	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Col1a1, Bglap, Spp1, Alpl, Postn, Tnc, Pth1r, Sox9, Runx2, Sp7, Atf4"	Osteoblasts	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4952	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	Ifitm5	Osteoblasts	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4953	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	Ctnnb1	Osteoblasts	Tissue	Blood	31949165	Nat Commun	A Wnt-mediated transformation of the bone marrow stromal cell identity orchestrates skeletal regeneration.	"GSE136970, GSE136973, GSE136979"
4954	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Osteocalcin, Bglap, Col1a1"	Osteoblasts	Tissue	Blood	31871321	Nat Cell Biol	"Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	GSE122467
4955	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Sp7, Alpl, Ibsp, Bglap, Dmp1, Alpl, Ibsp"	Osteoblast progenitors	Tissue	Blood	31934494	Bone Res	Focal adhesion protein Kindlin-2 regulates bone homeostasis in Mouse	NA
4956	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Sp7, Alpl, Ibsp, Bglap, Dmp1, Sp7, Alpl"	Preosteoblasts	Tissue	Blood	31934494	Bone Res	Focal adhesion protein Kindlin-2 regulates bone homeostasis in Mouse	NA
4957	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Sp7, Alpl, Ibsp, Bglap, Dmp1, Bglap, Dmp1"	Osteoblasts	Tissue	Blood	31934494	Bone Res	Focal adhesion protein Kindlin-2 regulates bone homeostasis in Mouse	NA
4958	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Csf1r, Spi1, Cx3cr1, Trem2, Nfatc1"	Osteoblasts	Tissue	Blood	31934494	Bone Res	Focal adhesion protein Kindlin-2 regulates bone homeostasis in Mouse	NA
4959	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	Col22a1	Osteoblasts	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4960	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	Dkk1	Osteoblasts	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4961	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	Ms4a4d	Adipocytes	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4962	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Slfn14	Erythrocytes	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4963	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Ms4a4c	Monocytes	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4964	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Klre1	Natural killer (NK) cells	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4965	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD22, CD79a, CD83, JCHAIN, IGHM"	B cells	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
4966	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	CAP3	Mast cells	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
4967	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD68, CTSS, LY86, CST3"	Monocytes	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
4968	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD247, CD8b, LGALS1"	T lymphocytes	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
4969	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Acta2	Pericytes	Tissue	Blood	31130381	Cell	A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia	NA
4970	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd3e, Cd3g, Ncr1, Klrb1a, Klrb1b, Klrb1c"	T cells	Blood	Blood	32406817	eLife	Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature	GSE150166
4971	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Tmem176a, Tmem176b, Cxcr6"	Innate lymphoid cells (ILCs)	Blood	Blood	32406817	eLife	Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature	GSE150166
4972	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Klrb1a, Klrb1b, Klrb1c"	Natural killer (NK) cells	Blood	Blood	32406817	eLife	Single-cell transcriptome reveals the novel role of T-bet in suppressing the immature NK gene signature	GSE150166
4973	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	B220	B cells	Tissue	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4974	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Ly6G, Mac1, Ter119, CD71"	Erythrocytes	Tissue	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4975	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Ly6G, Mac1"	Granulocytes	Tissue	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4976	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	"Kit, Sca1"	Hematopoietic stem cells	Blood	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4977	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"Kit, CD150, CD41"	Megakaryocytes	Tissue	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4978	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Mac1	Monocytes	Tissue	Blood	32413320	Cell	An Engineered CRISPR-Cas9 Mouse Line for Simultaneous Readout of Lineage Histories and Gene Expression Profiles in Single Cells	NA
4979	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Siglech, Ly6d"	Plasmacytoid dendritic cell progenitor	Blood	Blood	32422235	Gene	Nascent transcript and single-cell RNA-seq analysis defines the mechanism of action of the LSD1 inhibitor INCB059872 in myeloid leukemia.	"GSE145071, GSE145106, GSE145166, GSE145211, GSE145279, GSE145410"
4980	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	LILRA4	Plasmacytoid dentritic cells	Blood	Blood	31574155	Gigascience	IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.	GSE60361.
4981	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Platelet	"CD41, CD150"	Platelet	Blood	Blood	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
4982	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Platelet	Hemgn	Platelet	Tissue	Blood	32286228	eLife	Single cell transcriptomics identifies a unique adipose lineage cell population that regulates bone marrow environment	GSE145477
4983	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Cd34, Kit"	Progenitor cells	NA	Blood	29921301	Genome Biology	dropEst:pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments	GSE65525
4984	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ahnak, Mpeg1, Mki67, Stmn1"	Proliferating promonocytes	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4985	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Dbi, Aldoc, Slc1a3, Gli3"	Radial glia cells	Blood	Blood	32234482	Cell	Cortical Neural Stem Cell Lineage Progression Is Regulated by Extrinsic Signaling Molecule Sonic Hedgehog	GSE140817
4986	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Blood	Blood	32668198	Cell	The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid- Type I IFN Signaling Axis	GSE150387
4987	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Csf1r, Ly6C2, Ccr2, Cx3cr1, Cd209a"	Monocytes	Blood	Blood	32668198	Cell	The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid- Type I IFN Signaling Axis	GSE150387
4988	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Blood	Blood	32668198	Cell	The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid- Type I IFN Signaling Axis	GSE150387
4989	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Ctla4	Regulatory T cells (Treg)	Blood	Blood	32075963	Nat Commun	Immune checkpoint modulation enhances HIV-1 antibody induction	PRJNA556211
4990	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Blood	Blood	32515782	J Exp Med	BACH2 drives quiescence and maintenance of resting Treg cells to promote homeostasis and cancer immunosuppression	GSE128176
4991	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Mog, Mag"	Schwann cells	Tissue	Blood	31871321	Nat Cell Biol	"Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization."	GSE122467
4992	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	POU5F1	Schwann cells	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
4993	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79A, Cd19"	B cells	Blood	Blood	32929473	Blood	RUNX1 and CBFbeta-SMMHC transactivate target genes together in abnormal myeloid progenitors for leukemia development	GSE152573
4994	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd4, Cd8a, Cd6"	Immature T cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4995	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ahnak, Thy1, Cd3e, Cd8"	T cells	Tissue	Blood	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
4996	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd3d, CD40, CD8a, CD8b1, CD5, Ms4a4b, Cd28, Il7r, Lef1, Dapl1, Cd3e, Cd8a, Gzmk, Gzmm, Ccl5, S100a6, Lgals1, Klrk1, Crtam, Eomes"	Cytotoxic T cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
4997	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3g	T cells	NA	Blood	31551511	Scientific Reports	"Comparative transcriptomics between species attributes reactogenicity pathways induced by the capsular group B meningococcal vaccine, 4CMenB, to the membrane-bound endotoxin of its outer membrane vesicle component"	GSE132199
4998	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	CD3E	T cells	Blood	Blood	31574155	Gigascience	IKAP-Identifying K mAjor cell Population groups in single-cell RNA-sequencing analysis.	GSE60361.
4999	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Klf2, Zbtb32, Bach2, Il9r, Ccr6, Cd38, S1pr1"	Memory B cells	Blood	Blood	33010224	Immunity	Affinity-Restricted Memory B Cells Dominate Recall Responses to Heterologous Flaviviruses.	GSE154102
5000	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"COL3A1, IGFBP7"	Fibroblasts	Cell line	Blood	33054971	eLife	"GATA6 mutations in hiPSCs inform mechanisms for maldevelopment of the heart, pancreas, and diaphragm"	NA
5001	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3d	T cells	Blood	Blood	32668198	Cell	The Intestinal Microbiome Restricts Alphavirus Infection and Dissemination through a Bile Acid- Type I IFN Signaling Axis	GSE150387
5002	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Klf1, Gata1"	Erythrocytes	Blood	Blood	33147438	Mol Cell	Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mouse and Humans	GSE157832
5003	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	Procr	Hematopoietic stem cells	Blood	Blood	33147438	Mol Cell	Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mouse and Humans	GSE157832
5004	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Dntt, Flt3"	Lymphocytes	Blood	Blood	33147438	Mol Cell	Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mouse and Humans	GSE157832
5005	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	"Gzmb, Cma3, Mcpt8"	Mast cells	Blood	Blood	33147438	Mol Cell	Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mouse and Humans	GSE157832
5006	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"Itga2b, Pf4, Vwf"	Megakaryocytes	Blood	Blood	33147438	Mol Cell	Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mouse and Humans	GSE157832
5007	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Irf8, Ms4a6c"	Monocytes	Blood	Blood	33147438	Mol Cell	Two Aldehyde Clearance Systems Are Essential to Prevent Lethal Formaldehyde Accumulation in Mouse and Humans	GSE157832
5008	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Car4, Trh, Tagln2"	Thyroid and lung progenitors	Blood	Blood	29311656	Nat Cell Bio	Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation	NA
5009	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ebf1, Bach2, Pax5, Id3"	Follicular B cells	Cell line	Blood	33302977	J Hematol Oncol	Trajectory of chemical cocktail_induced neutrophil reprogramming	NA
5010	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD23	Follicular naive B cells	Cell line	Blood	33302977	J Hematol Oncol	Trajectory of chemical cocktail_induced neutrophil reprogramming	NA
5011	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cmop	"Cd34, Ly6c2"	Cmop	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5012	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mdp	"Cd34, Kit, Fcgr3, Ly6c2, Csf1r"	Mdp	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5013	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Meg	"Cd34, Kit"	Meg	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5014	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mp	"Cd34, Kit, Fcgr3, Ly6c2"	Mp	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5015	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	"Fcgr3, Ly6c2"	Pre-neuronal cells 1	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5016	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	"Ly6c2, Itgam, Cd177"	Pre-neuronal cells 2	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5017	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	"Fcgr3, Ly6c2, Itgam, Ly6g, Cd177"	Pre-neuronal cells 3	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5018	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Fcgr3, Ly6c2, Vcam1"	Proneu-1	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5019	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Fcgr3, Ly6c2, Vcam1, Itgam"	Proneu-2	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5020	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD11b, Ly6Chi"	Classical monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5021	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD11b, Ly6Chi"	Classical monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5022	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Cd34, Kit"	Hematopoietic stem and progenitor cells	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5023	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"F4, F80"	Macrophages	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5024	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Siglec1, Arg1, Mrc1, Csfr1, Tgfb1, Tgfbr1"	Macrophages	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5025	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"F4, F80"	Macrophages	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5026	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Siglec1, Arg1, Mrc1, Csfr1, Tgfb1, Tgfbr1"	Macrophages	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5027	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD11b, Ly6Clo"	Alternatively activated monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5028	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD11b, Ly6G_, Ly6Clo"	Alternatively activated monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5029	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	CD11b	Monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5030	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Siglec1, Arg1, Mrc1, Csfr1, Tgfb1, Tgfbr1"	Monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5031	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	CD11b	Monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5032	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Siglec1, Arg1, Mrc1, Csfr1, Tgfb1, Tgfbr1"	Monocytes	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5033	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"CD11b, Ly6G"	Neutrophils	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5034	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"CD11b, Ly6G"	Neutrophils	Tissue	Bone	32024825	Nat Commun	Regulation of heterotopic ossification by monocytes in a Mouse model of aberrant wound healing	NA
5035	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Kit	Erythrocytes	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5036	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Ly6c2, Itgam, Ly6g, Cd177"	Immature neurons	Tissue	Bone	32494068	Nature	Mouse models of neutropenia reveal progenitor-stage-specific defects	GSE120409
5037	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal ganglia	"Ntn1, Slc6a3"	Basal ganglia	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5038	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal plate	"Fgfbp3, Spon1, Id3, Shh, Foxa2, Ntn1, Ednrb"	Basal plate	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5039	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal plate	"Spon1, Dmrta2, Shh, Shisa3, Sulf1, Foxa2, P4ha3, Corin, Aldh1l1, Tacr1, Ntn1, Bcas1, Sulf2, Serpine2, Slit1, Fgfbp3, Fam210b, Dok5, Lrrn1, Npl, Cdc42ep3, Cthrc1, Hpgd, Enpp2, Scrn1, Pcdh8, S100a10, Ndrg2, Pak3, E130114P18Rik, Fabp7, Rgma, Limch1, Lmx1a, H"	Basal plate	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5040	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Capillaries	"Tfrc, Car4, Slc16a1"	Capillaries	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5041	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cartex	Satb2	Cartex	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5042	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Caudal thalamus	"Gbx2, Cd47, Rora, Id4, Chst1, Cd47, Slc18a2, Hs6st2, Epha3, Robo2, Kitl, Neurog1, Dll1"	Caudal thalamus	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5043	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Calb1, Gbx2, Sp9"	Caudal thalamus neuron I	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5044	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Crabp2, Syt13, Cd47"	Caudal thalamus neuron II	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5045	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cerebellum	"Arap1, Pax3, Ntn1"	Cerebellum	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5046	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Claupyr	"Tbr1, Pcp4"	Claupyr	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5047	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tbr1, Pcp4"	Cortext layer5 /layer6 pyramidal	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5048	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Eomes, Neurog2"	Cortical excitatory ipc	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5049	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Wnt8b, Dkk3, Rspo1"	Cortical hem	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5050	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tlx3, Arx"	Cortical interneuron	Cell line	Brain	31086315	Nat Neurosci	Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.	GSE114176
5051	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Pax6, Vim, Nes"	Cortical retina ganglion cells (rgcs)	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5052	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dentate gyrus granule cells	Prox1	Dentate gyrus granule cells	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5053	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Cdk1, Ccna2, Cenpf"	Dividing tumor cells	NA	Brain	32579914	Cell Rep	NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma	GSE150752
5054	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Efferocytosis	"Rac1, Il10ra, Mfge8, Mafb, Fasl"	Efferocytosis	NA	Brain	32336197	Circ Res	Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression	NA
5055	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithalamus-derived lateral habenular nucleus	Pou4f1	Epithalamus-derived lateral habenular nucleus	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5056	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	External granular layer (egl) cell	"Neurod1, Ccdn2"	External granular layer (egl) cell	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5057	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gaba intermediate cells (gaba int)	"Pax2, Lhx5"	Gaba intermediate cells (gaba int)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5058	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gabaergic	Tal1	Gabaergic	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5059	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gabaergic and glutamatergic	"Gad1, Tal1, FoxP1, Vsx2, Nkx6-1"	Gabaergic and glutamatergic	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5060	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ghrh_th	"Plcb4, Prkar2b, Adcy1"	Ghrh_th	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5061	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glioblastoma multiforme	IL4R	Glioblastoma multiforme	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5062	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glutamatergic	Vsx2	Glutamatergic	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5063	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glutamatergic cerebellar nuclei early (glucn early)	"Atoh1, Meis2, Lhx9"	Glutamatergic cerebellar nuclei early (glucn early)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5064	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glutamatergic cerebellar nuclei late (glucn late)	"Lmx1a, Meis2"	Glutamatergic cerebellar nuclei late (glucn late)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5065	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glutamatergic cerebellar nuclei mid (glucn mid)	"Meis2, Lhx10"	Glutamatergic cerebellar nuclei mid (glucn mid)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5066	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hemoglobin-expressing vascular cells	"Cldn5, Cldn5"	Hemoglobin-expressing vascular cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5067	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hippocampal pyramidal - crym	Crym	Hippocampal pyramidal - crym	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5068	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hippocampal pyramidal precursor	Nrp1	Hippocampal pyramidal precursor	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5069	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hippocampus	"Fn1, Tspan18"	Hippocampus	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5070	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Homoeostatic	"P2ry12, Tmem119, Trem2"	Homoeostatic	Tissue	Brain	33054973	eLife	A MAC2-positive progenitor-like microglial population is resistant to CSF1R inhibition in adult Mouse brain	GSE150169
5071	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hypendymal cells	"Ccdc153, Sspo, Rax, Ttr"	Hypendymal cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5072	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Igl-dcn	"Pnoc, Snhg11, Tcf7l2, Gad1, Gad2, Lhx9"	Igl-dcn	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5073	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immature gc	Fxyd7	Immature gc	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5074	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Inflammasome-il-1b pathway	"Il1b, Nlrp3, Nlrc4"	Inflammasome-il-1b pathway	NA	Brain	32336197	Circ Res	Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression	NA
5075	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Jakstat signaling	"Jak1, Stat1"	Jakstat signaling	NA	Brain	32336197	Circ Res	Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression	NA
5076	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Low quality cells	"Hb-a1a, Hbb-y, Hbb-bs"	Low quality cells	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5077	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mature gc	"Plk5, Ntng"	Mature gc	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5078	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Medial ganglionic eminences	Nkx2-1	Medial ganglionic eminences	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5079	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Medulia	"Pax2 , Ntn1"	Medulia	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5080	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Meningeal cells	Cxcl12	Meningeal cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5081	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Meningeal cells	Cxcl12	Meningeal cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5082	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Meningeal cells	Foxc1	Meningeal cells	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5083	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Prrx2	Mesenchymal stem cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5084	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Prrx2	Mesenchymal stem cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5085	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia homeostatic	"Fcrls, Cx3cr1, Tmem119, P2ry12"	Microglia homeostatic	Tissue	Brain	32209470	Cell Rep	Chronic Peripheral Inflammation Causes a Region-Specific Myeloid Response in the Central Nervous System.	GSE145708
5086	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Migrating interneuron	"Dlx1, Dlx2, Dlx5, Dlx6, Lhx6, Foxp2, Adarb2"	Migrating interneuron	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5087	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Apoe, C1qb, Fcer1g"	Microglia cells	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5088	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mirgrating interneuron	Dlx6os1	Mirgrating interneuron	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5089	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vacht, Olig2"	Motor neuron	Cell line	Brain	31086315	Nat Neurosci	Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.	GSE114176
5090	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mural cells	"Kcnj8, Abcc9, Mustn1, Mhy11"	Mural cells	Cell line	Brain	31447324	Cell Metab	Glucose-Dependent Insulinotropic Polypeptide Receptor-Expressing Cells in the Hypothalamus Regulate Food Intake	NA
5091	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mural cells	Vtn	Mural cells	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5092	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myelomonocytic cells	"Ccr2, Mrc1, Lyz2, Cd163"	Myelomonocytic cells	Organoids	Brain	30850344	Immunity	Microglial Function Is Distinct in Different Anatomical Locations during Retinal Homeostasis and Degeneration	"GSE126783, GSE33089, GSE126783."
5093	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Arx, Maf"	Precursor state 1	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5094	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Isl1, Ebf1"	Precursor state 1	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5095	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Retnla, Clec10a, Folr2, Timd4, Mrc1"	SnMac2	Tissue	Brain	32284604	Nat Neurosci	"Profiling peripheral nerve macrophages reveals two macrophage subsets with distinct localization, transcriptome and response to injury"	NA
5096	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Apoe, Ctsb"	Neurodegeneration-related microglia	Tissue	Brain	32795415	Cell	Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPbeta in Microglia.	GSE145454
5097	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Isg15, Ifit3"	Interferon-related microglia	Tissue	Brain	32795415	Cell	Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPbeta in Microglia.	GSE145454
5098	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Mrc1	Perivascular macrophages	Tissue	Brain	32795415	Cell	Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPbeta in Microglia.	GSE145454
5099	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Top2a, Mki67"	Proliferating microglia	Tissue	Brain	32795415	Cell	Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPbeta in Microglia.	GSE145454
5100	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"S100a6, Msrb1"	"Neutrophils, Monocytes"	Tissue	Brain	32795415	Cell	Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPbeta in Microglia.	GSE145454
5101	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	Mki67	Proliferating cells	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5102	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Ascl1, Dlx2"	Neural progenitors	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5103	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Sox4, Sox11"	Neurogenic and Neural differentiation	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5104	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuts	"S100a9, S100a8, Camp, Ly6g"	Neuts	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5105	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gbx2	Newborn neuron precursors	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5106	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nlpc	"Mxd3, Ascl1, Neurog2, Rfc4, Lockd"	Nlpc	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5107	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Noradrenergic cells	"Tfap2b, Phox2b"	Noradrenergic cells	Cell line	Brain	31086315	Nat Neurosci	Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.	GSE114176
5108	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Noradrenergic cells	"Hand2, Dbh"	Noradrenergic cells	Cell line	Brain	31315047	Cell Rep	Conversion of Astrocytes and Fibroblasts into Functional Noradrenergic Neurons	GSE132184
5109	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Noradrenergic cells	"Stmn3, Syn2, Dbh, Snap 25, Cyb561, Tubb3"	Noradrenergic neuronal cells	Cell line	Brain	31315047	Cell Rep	Conversion of Astrocytes and Fibroblasts into Functional Noradrenergic Neurons	GSE132184
5110	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Npcs	"Tfap2b, Ccnd2"	Npcs	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5111	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oec	Mybpc1	Oec	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5112	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Olfactory bulb	Deptor	Olfactory bulb	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5113	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Npy, Gja1"	Olfactory ensheathing glia	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5114	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mbp	Oligodendrocytes	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5115	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Pdgfra	Oligodendrocytes	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5116	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mog, Cnp, Plp1, Mbp"	Oligodendrocyte-like cells	Tissue	Brain	31539496	Cell	"Rapid Generation of Somatic Mouse Mosaics with Locus-Specific, Stably Integrated Transgenic Elements"	"GSE117154, GSE131675, GSE131672, GSE131940, GSE131873"
5117	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Opcs	"Olig2, Pdgfra"	Opcs	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5118	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Opcs	"Pdgfra, Vcan"	Opcs	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5119	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Opcs	Olig1	Opcs	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5120	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Opcs	Pdgfra	Opcs	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5121	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	Prox1	Pan germ cells	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5122	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	Ptprc	Pan hematopoietic	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5123	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	"Tuj1, Stmn2, Stmn3"	Pan neuronal cells	Cell line	Brain	31315047	Cell Rep	Conversion of Astrocytes and Fibroblasts into Functional Noradrenergic Neurons	GSE132184
5124	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Erbb3, S100b, Mbp, Plp1"	MySCs	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5125	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Erbb3, S100b, Ngfr, p75"	NmSCs	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5126	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	"Grin1, Rbfox3"	Pan-neuronal cells	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5127	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pc early	"Foxp2, Lhx5"	Pc early	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5128	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pc late	"Calb1, Foxp2"	Pc late	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5129	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Perivascular cells	"Apoe, Cc74, Mrc1"	Perivascular mf	Tissue	Brain	32702313	Cell	Microglia Require CD4 T Cells to Complete the Fetalto-Adult Transition	GSE144038
5130	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Post-capillary venules	"Nr2f2, Flt4, Vwf"	Post-capillary venules	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5131	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Projection neuron	"Isl1, Ebf1"	Projection neuron	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5132	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Purkinje cells	"Pcp4, Gad1, Gad2"	Purkinje cells	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5133	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Purkinje cells	Calb1	Purkinje cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5134	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Purkinje cells	Calb1	Purkinje cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5135	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rmtg	"Sox14, FoxP1, Sox2"	Rmtg	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5136	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Roof plate	"Ttr, Rspo3, Ezr"	Roof plate	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5137	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Roof plate	"Bmp4, Msx1, Trpm3, Mab21l2, Clic6, Fgf8, Rspo2, 4931429I11Rik, Esm1, Wnt1, Calml4, Lypd6, Car14, Rbp4, Bmp7, Ifitm2, Klhdc8b, Klk8, Fibcd1, Cbln1, Tmem108, Galnt12, Wnt9a, Sfrp1, Nrn1, Ezr, Sepp1, Mdk, Kcna5, Slit2, Igfbp7, Sostdc1, Serpinh1, Vtn, Alcam"	Roof plate	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5138	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lmx1a, Msx1, Bmp7"	Roof plate like stem cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5139	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lmx1a, Msx1, Bmp7"	Roof plate like stem cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5140	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rostral midbrain	Tfap2d	Rostral midbrain	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5141	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Bhlhe23, Neurog1, Neurod1"	Rostral pretectal neuronal precursor	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5142	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"ISlr2, Bhlhe23, Ntm"	Rostral pretectal nuerons	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5143	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rostral pretectum	"C1ql2, Bhlhe23, Irx2, Islr2, Lmo3, Ebf3"	Rostral pretectum	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5144	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rostral pretectum	"Tmsb4x, Igfbpl1, Ptn, Rspo1, Barhl2, Ccnd1, Cd24a, Olig3, Rspo3, 2810417H13Rik, Rrm2, Anp32b, Dut, Fabp5, Akr1b3, Macrod2, Shox2, Cdca7, Dctpp1, Pcna, Neurog2, Cenpw, Fgf15, Prim1, Fkbp4, Dnajc9, Dek, 2310009B15Rik, Mcm5, Nasp, Pdlim1, Neurog1, Rfc4, Flrt"	Rostral pretectum	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5145	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rostral thalamic neuronal precursor	"Tal2, Pnoc, Gata2"	Rostral thalamic neuronal precursor	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5146	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rostral thalamus	"Sox14, Gata3, Gata2, Tal1"	Rostral thalamus	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5147	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rostral thalamus/prethalamus	"Pdlim3, Nkx2-2, Gsx1, Gsx2, Helt, Ckb, Olig2, Nnat, Nkx2-9, Dlx2, Tubb2a, Olig1, Ptch1, Sox21, Slc25a5, Emx2, Fam181b, Lhfp, Dlk1, Itm2a, Peg10, Arl4a, Fst, Gpm6a, Acot1, Gpm6b, Ntn1, Shh, Tubb2b, Dll3, Arx, 2510009E07Rik, Kiz, Serpine2, Cdk5r1, Ascl1, Ed"	Rostral thalamus/prethalamus	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5148	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rv2 precursor	"Lhx4, Vsx2, Skor1, Sox14"	Rv2 precursor	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5149	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	S1pyrdl	"Pcp4, Tbr1"	S1pyrdl	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5150	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Serotonergic precursors	"Gata2, Gata3"	Serotonergic precursors	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5151	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Snmacs	"CD206, Mgl2"	Snmacs	Tissue	Brain	32284604	Nat Neurosci	"Profiling peripheral nerve macrophages reveals two macrophage subsets with distinct localization, transcriptome and response to injury"	NA
5152	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spinal motor	"Vacht , Olig2"	Spinal motor	Cell line	Brain	31086315	Nat Neurosci	Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.	GSE114176
5153	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spinalcord	Pdella	Spinalcord	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5154	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Striatal	Gpr88	Striatal	Tissue	Brain	32637622	Sci Adv	Molecular atlas of the adult mouse brain	GSE147747
5155	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Striatum	Rarb	Striatum	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5156	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tanycytes	"Gja1, Rax"	Tanycytes	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5157	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Taste cells	KRT8	Taste cells	Tissue	Brain	32259485	Cell	Defining the Design Principles of Skin Epidermis Postnatal Growth	GSE145216
5158	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thalamic	Rora	Thalamic	Tissue	Brain	32637622	Sci Adv	Molecular atlas of the adult mouse brain	GSE147747
5159	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thalamic precursors	"Olig3, Barhl2"	Thalamic precursors	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5160	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thalamus	"Syt13, Chst1, Shisa9, Cd47, Robo2, Prokr2, Id4, Elmo1, Wif1, Ntng1, Pou2f2, Tmem132a, Kitl, Rora, Hs6st2, Pdzm3, Crabp2, Dmrtb1, Slc18a2, Enpp2"	Thalamus	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5161	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thalamus	Fign	Thalamus	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5162	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tight junction	Cldn5	Tight junction	Tissue	Brain	32209470	Cell Rep	Chronic Peripheral Inflammation Causes a Region-Specific Myeloid Response in the Central Nervous System.	GSE145708
5163	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unipolar brush cells (ubc)	Eomes	Unipolar brush cells (ubc)	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5164	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unipolar brush cells (ubc)	Eomes	Unipolar brush cells (ubc)	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5165	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unipolar brush cells (ubc)	"Pax6, Eomes"	Unipolar brush cells (ubc)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5166	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unipolar brush cells of the dorsal cochlear nucleus	"Eomes, Lmx1a, Calb2"	Unipolar brush cells of the dorsal cochlear nucleus	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5167	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unipolar brush cells_granule neuron intermediate cells (ubc/gn int)	Pax6	Unipolar brush cells_granule neuron intermediate cells (ubc/gn int)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5168	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Upper rhombic lip early (url early)	"Wnt1, Lmx1a"	Upper rhombic lip early (url early)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5169	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Upper rhombic lip late (url late)	"Wnt1, Otx2, Pax6, Sla1a3"	Upper rhombic lip late (url late)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5170	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular leptomeningeal cells	"Il33, Ptgds"	Vascular leptomeningeal cells	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5171	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular leptomeningeal cells	"Lum, Pdgfra"	Vascular leptomeningeal cells	Cell line	Brain	31447324	Cell Metab	Glucose-Dependent Insulinotropic Polypeptide Receptor-Expressing Cells in the Hypothalamus Regulate Food Intake	NA
5172	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular leptomeningeal cells	"Pdgfra, Gja1, Slc6a13"	Vascular leptomeningeal cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5173	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular leptomeningeal cells	Slc6a13	Vascular leptomeningeal cells	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5174	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular leptomeningeal cells	Rgs5	Vascular leptomeningeal cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5175	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vasculature	"P2ry14, Notch3"	Vasculature	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5176	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ventral forebrain rgc	"Nes, Nkx2-1, Ascl1, Rbp1"	Ventral forebrain rgc	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5177	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vsx2 glutamatergic	"Lhx4, Skor1, Shox2, Sox14"	Vsx2 glutamatergic	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5178	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Zone limitans intrathalamica	"Pitx2, Dmrta2, Nr4a2, Foxa2"	Zone limitans intrathalamica	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5179	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Apical progenitors	Id3	Apical progenitors	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5180	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocyte-like cells	"Agp4, Gfap, Apoe, Id3"	Astrocyte-like cells	Tissue	Brain	31539496	Cell	"Rapid Generation of Somatic Mouse Mosaics with Locus-Specific, Stably Integrated Transgenic Elements"	"GSE117154, GSE131675, GSE131672, GSE131940, GSE131873"
5181	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aldoc	Astrocytes	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5182	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Sox9, Etv4, Sall3, Grin2c, Kcng4"	Astrocytes	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5183	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Endothelial cells	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5184	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	C1qc	Microglia cells	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5185	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Stmn2	Neurons	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5186	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mog	Oligodendrocytes	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5187	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	Gdf10	Bergmann glia cells	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5188	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Reln, Mpped1, Id2"	E18.5 id2 neurons	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5189	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vip, Synpr, Igf1"	E18.5 vip neurons	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5190	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Sst, Tspan7, Satb1"	Early stage pvalb neurons	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5191	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Mef2c, Erbb4, Plcxd3"	Early stage sst neurons	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5192	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Igfbp7, Col4a1"	Endothelial cells	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5193	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Neurod6	Excitatory neurons	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5194	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Blood cells	"Hbb-bs, Hba-a1"	Blood cells	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5195	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Blood cells	CD31	Blood cells	Tissue	Brain	32209470	Cell Rep	Chronic Peripheral Inflammation Causes a Region-Specific Myeloid Response in the Central Nervous System.	GSE145708
5196	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Olig3	Brainstem progenitors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5197	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Olig3	Brainstem progenitors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5198	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nppb, N31ra, Etv1"	Neural cells c11	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5199	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Mrgpra3, Etv1"	Neural cells c12	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5200	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Trpm8, foxp2, gpr26"	Neural cells c1-2	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5201	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Mrgprd, Grik1, Trpc3"	Neural cells c13	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5202	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Cd34, Cdh9, Gm7271"	Neural cells c3	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5203	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"S100b, Pcdh7, Ntng1, Rgs6, Piezo2"	Neural cells c4	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5204	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Ntrk2, Cacna11, Scn5a"	Neural cells c5	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5205	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"S100b, Scn10a, Calca, Htr3a, Piezo2"	Neural cells c6	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5206	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Trpv1, Trpa1, Tac1, Calca"	Neural cells c7-10	Tissue	Brain	31592768	eLife	Stereotyped transcriptomic transformation of somatosensory neurons in response to injury	GSE131272
5207	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cajal-Retzius cells	"Reln, Lhx1, Lhx5"	Cajal-Retzius cells	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5208	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cajal-Retzius cells	"Trp73, Reln"	Cajal-Retzius cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5209	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Rrm2, Spc25, Hmgb2"	Caudal thalamic intemediate progenitor	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5210	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Ptn, Id3, Rspo1"	Caudal thalamic neural progenitor	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5211	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Arachnoid barrier cells	"Abcg2, Pgp"	Arachnoid barrier cells	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5212	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Bmx	Arterial endothelial cells	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5213	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aldoc	Astrocytes	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5214	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Meox1	Capillary endothelial cells	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5215	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Endothelial cells	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5216	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Npy	Neurons	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5217	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Plp1, Sox10"	Oligodendrocytes	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5218	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Slc38a5	Venous endothelial cells	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5219	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cell cycling cells	"Hmgb2, Top2a, mKi67"	Cell cycling cells	Tissue	Brain	31539496	Cell	"Rapid Generation of Somatic Mouse Mosaics with Locus-Specific, Stably Integrated Transgenic Elements"	"GSE117154, GSE131675, GSE131672, GSE131940, GSE131873"
5220	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Mki67	Cerebellar interneuron progenitor	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5221	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Choroid plexus cells	NA	Choroid plexus cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5222	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Choroid plexus cells	"Lcn2, 1500015O10Rik"	Choroid plexus cells	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5223	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Choroid plexus cells	Ttr	Choroid plexus cells	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5224	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Brain	30269986	Neuron	PDGFRb Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2	GSE112436
5225	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Lyve1	Lymphatic vessel endothelial cells	Tissue	Brain	30269986	Neuron	PDGFRb Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2	GSE112436
5226	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Iba1, Aif1"	Microglia cells	Tissue	Brain	30269986	Neuron	PDGFRb Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2	GSE112436
5227	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta2	Smooth muscle cells	Tissue	Brain	30269986	Neuron	PDGFRb Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2	GSE112436
5228	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Arterioles	"Bmx, Jag1, Efnb2"	Arterioles	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5229	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aldh1l1, Slc1a3, Aqp4, Gdf10, Vim, Nbl1, A2m"	Bergman glia	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5230	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aldh1l1, Slc1a3, Aqp4, Slc17a7, Neurod6, Mab21l1"	Excitatory neurons	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5231	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aldh1l1, Slc1a3, Aqp4, Gad1, Reln, Calb1"	Inhibitory neurons	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5232	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aldh1l1, Slc1a3, Aqp4, Dcx, Dlx2, Ascl1, Hes5"	Neuroprogenitor cells	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5233	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aldh1l1, Slc1a3, Aqp4, Des, Mcam, Pdgfrb"	Pericytes	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5234	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Pecam1, Cldn5, Slco1c1, Ocln"	Biliary epithelial cells	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5235	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mog, Mag, Gjc2"	Mature myelinating oligodendrocytes	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5236	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Cx3cr1, P2ry12, Tmem119, MHC-II"	Microglia cells	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5237	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Pdgfra, Susd5, Cspg4"	Oligodendrocyte progenitors	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5238	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Clu, Apoe"	Astrocytes	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5239	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Atoh1	Atoh1 neuronal progenitors	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5240	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Egfl7	Endothelial cells	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5241	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"C1qa, C1qb, C1qc, Tmem119"	Microglia cells	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5242	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Pdgfra, Olig1, Olig2"	Oligodendrocyte precursors	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5243	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Corticotropes	Rasgrf2	Corticotropes	Tissue	Brain	32637622	Sci Adv	Molecular atlas of the adult mouse brain	GSE147747
5244	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cycling cells	Top2a	Cycling cells	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
5245	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cycling progenitors	"Top2a, Ube2c, Mki67, Hmgb2, Cenpf;"	Cycling progenitors	Tissue	Brain	32973039	Genome Res	Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain	GSE142274
5246	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Fcrls, P2ry12, Cx3cr1, Trem2, C1qa, Tubb3, Meg3, Dcx."	Microglia cells	Tissue	Brain	30471926	Immunity	Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes	GSE98971
5247	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Fcrls, P2ry12, Cx3cr1, Trem2, C1qa, Gfap"	Microglia cells	Tissue	Brain	30471926	Immunity	Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes	GSE98971
5248	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Fcrls, P2ry12, Cx3cr1, Trem2, C1qa, Olig1"	Microglia cells	Tissue	Brain	30471926	Immunity	Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes	GSE98971
5249	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Fcrls, P2ry12, Cx3cr1, Trem2, C1qa, Vtn"	Microglia cells	Tissue	Brain	30471926	Immunity	Single-Cell RNA Sequencing of Microglia throughout the Mouse Lifespan and in the Injured Brain Reveals Complex Cell-State Changes	GSE98971
5250	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Acsbg1, Aldh1, Glast, S100beta, Vimentin"	Astrocytes	Tissue	Brain	30624206	eLife	eIF2B activator prevents neurological defects caused by a chronic integrated stress response.	GSE18617
5251	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Calbindin-1, KCC2"	Neurons	Tissue	Brain	30624206	eLife	eIF2B activator prevents neurological defects caused by a chronic integrated stress response.	GSE18617
5252	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mbp, Coronin1A"	Oligodendrocytes and microglia	Tissue	Brain	30624206	eLife	eIF2B activator prevents neurological defects caused by a chronic integrated stress response.	GSE18617
5253	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	"Cntn2, Pax6, NeuroD1, Tubb3, Gap43"	Differentiated cells	NA	Brain	32579914	Cell Rep	NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma	GSE150752
5254	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	Rora	Differentiating purkinje cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5255	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	Rora	Differentiating purkinje cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5256	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pdgfrb, Pecam1"	Endothelial cells	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5257	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	NA	Atoh1	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5258	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	NA	"Neurod1, Reln, Nhlh1, Rbfox3"	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5259	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	NA	"Pcp2, Calb1, Sema3a, Shh, Rora, Gad1"	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5260	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	NA	"Gad1, Pax2, Ptf1a"	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5261	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Spi1, Ly6e, Ccl9, Hmgb1, Ccr2, Irf8"	Monocytes/macrophages	Tissue	Brain	30728335	JCI Insight	Cxcr4-expressing leukocytes are necessary for neurofibroma formation in mice.	GSE122730
5262	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gadd45g, St18, Btg2, Tis21"	Early neuronal precursors	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5263	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Spil, Hmgb1, ly6θ, Crc2, CcL9, Lrf8"	Monocytes/macrophages	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5264	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Map2, Slit2, Scn1a, Scn8a"	Somatosensory neurons 1	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5265	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Cckar, Th, Kif5c, Gabre1"	Somatosensory neurons 2	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5266	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Hes1, Hes5, Lhx1, Lhx5, Atoh1, Barhi1, Cldn5, Vtn"	Endothelial cells_pericytes_erythrocytes	Tissue	Brain	30735127	eLife	Specification of diverse cell types during early neurogenesis of the Mouse cerebellum	GSE120372
5267	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Lhx1, Lhx5"	Gabaergic neurons	Tissue	Brain	30735127	eLife	Specification of diverse cell types during early neurogenesis of the Mouse cerebellum	GSE120372
5268	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Atoh1, Barhl1"	Glutamatergic neurons	Tissue	Brain	30735127	eLife	Specification of diverse cell types during early neurogenesis of the Mouse cerebellum	GSE120372
5269	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"P2ry12, Siglech, Sparc"	Microglia cells	Organoids	Brain	30850344	Immunity	Microglial Function Is Distinct in Different Anatomical Locations during Retinal Homeostasis and Degeneration	"GSE126783, GSE33089, GSE126783."
5270	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Ccr2, Mrc1, Lyz2"	Myeloid cells	Organoids	Brain	30850344	Immunity	Microglial Function Is Distinct in Different Anatomical Locations during Retinal Homeostasis and Degeneration	"GSE126783, GSE33089, GSE126783."
5271	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Vtn, Lgals1, Col3a1"	Endothelial cells	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5272	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"ISlr2, Tac1, Necab2, Tac1, Pou4f1, Lmo3, Nefm, Irx1, Irx3, Irx2, Ebf3, Cntn2"	Epithalamic neurons	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5273	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Stmn2, Gap43"	Postmitotic neurons	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5274	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Hs6st2	Postmitotic neurons	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5275	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Dlx5, Dlx2, Dlx1, Gad2, Gad1, Arx"	Prethalamic neurons	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5276	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Npy, Gata3, Sox14"	Rostral thalamus neurons	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5277	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	"Foxj1, Wdr52"	Ependymal cells	Tissue	Brain	30982771	Cell Stem Cell	Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis	GSE122871
5278	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	Foxj1	Ependymal cells	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5279	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	Dnah11	Ependymal cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5280	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	"Foxj1, S100b"	Ependymal cells	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5281	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	Sema3c	Ependymal cells	Tissue	Brain	32973039	Genome Res	Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain	GSE142274
5282	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	Rarres2	Ependymal cells	Tissue	Brain	33037292	Commun Biol	Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography	NA
5283	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	"Ccdc153, Hdc"	Ependymal cells	Cell line	Brain	31447324	Cell Metab	Glucose-Dependent Insulinotropic Polypeptide Receptor-Expressing Cells in the Hypothalamus Regulate Food Intake	NA
5284	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	"Gja1, Ccdc153"	Ependymal cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5285	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Slc1a3, Aldh1l1"	Astrocytes	Tissue	Brain	30982771	Cell Stem Cell	Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis	GSE122871
5286	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Dlx1	Gabaergic neurons	Tissue	Brain	30982771	Cell Stem Cell	Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis	GSE122871
5287	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Neurod1	Glutamatergic neurons	Tissue	Brain	30982771	Cell Stem Cell	Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis	GSE122871
5288	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, Olig2"	Oligodendrocytes	Tissue	Brain	30982771	Cell Stem Cell	Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis	GSE122871
5289	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Gdf10	Astrocytes/bergmann glia	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5290	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aldh1l1	Astrocytes/bergmann glial precursors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5291	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Endothelial cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5292	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Endothelial cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5293	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Pax2	GABA interneurons	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5294	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Pax2	GABA interneurons	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5295	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Alf1	Microglia cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5296	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Alf1	Microglia cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5297	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mobp	Myelinating oligodendrocytes	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5298	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mobp	Myelinating oligodendrocytes	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5299	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, Pdgfra"	Oligodendrocyte precursors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5300	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, Pdgfra"	Oligodendrocyte precursors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5301	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Lhx2, Lhx9"	Post mitotic ntz neurons	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5302	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Lhx2, Lhx9"	Post mitotic ntz neurons	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5303	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts-like cells	Igfbp2	Fibroblasts-like cells	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5304	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Ret, Ntrk1"	Sensory neurons	Cell line	Brain	31086315	Nat Neurosci	Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.	GSE114176
5305	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Dlx1, Dlx2"	Forebrain inhibitory neuron progenitors	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5306	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Ptf1a	Gaba progenitors 1	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5307	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Lhx5	Gaba progenitors 2	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5308	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tuj1, Map2"	General neuron	Cell line	Brain	32523990	Sci Adv	Generation of self-organized sensory ganglion organoids and retinal ganglion cells from fibroblasts.	PRJNA597624
5309	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tubb3, Map2."	Generic neuronal	Cell line	Brain	31086315	Nat Neurosci	Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes.	GSE114176
5310	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aqp4, Aldoc, Gfap, Fabp7"	Astrocytes	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5311	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, S100b"	Oligodendrocyte	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5312	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Ptprc, Aif1"	Microglia	Tissue	Brain	30690467	J Mol Cell Biol	Single-cell transcriptomes reveal molecular specializations of neuronal cell types in the developing cerebellum	GSE122357
5313	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Fabp7	Gliogenic progenitors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5314	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Fabp7	Gliogenic progenitors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5315	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Adora2a	ISPN	Tissue	Brain	31178122	Cell	Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity	NA
5316	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Drd1	DSPN	Tissue	Brain	31178122	Cell	Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity	NA
5317	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tshz1, Otof, Cacng5"	ESPN	Tissue	Brain	31178122	Cell	"YAP, but Not RSPO-LGR4/5, Signaling in Biliary Epithelial Cells Promotes a Ductular Reaction in Response to Liver Injury"	NA
5318	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	Atoh1	Granule neuron progenitors	Tissue	Brain	32294450	Cell Rep	Medulloblastoma Arises from the Persistence of a Rare and Transient Sox2 + Granule Neuron Precursor	GSE118068
5319	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	Pax6	Granule neuron progenitors	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5320	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	"Atoh1, Zic1,Mcm6, Srebf1, Ung"	GNP_G1	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5321	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	"Atoh1, Zic2, Dek, Top2a, Hist1h1t"	GNP_S	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5322	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	"Atoh1, Zic3, Ccnb2, Cdc20, Cenpa"	GNP_G2M	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5323	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	"Atoh1, Zic4, Rbfox3, Neurod1, Tubb3"	GNP_mature	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5324	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	"Lhx5, Skor1, Tfa2b"	Granule neuron progenitors	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5325	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Apoa2	Hepatocytes	Organoids	Brain	32955435	eLife	Genetic mapping of etiologic brain cell types for obesity	"GSE74672, GSE87544, GSE113576, GSE93374, GSE125065, GSE109774, SRP135960"
5326	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	Prox1	Hippocampal granule	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5327	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	"Prox1, Nrp2"	Hippocampal granule precursor	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5328	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	P2RY12	Homeostatic microglial	Tissue	Brain	32209470	Cell Rep	Chronic Peripheral Inflammation Causes a Region-Specific Myeloid Response in the Central Nervous System.	GSE145708
5329	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Fcrls, P2ry12, Cx3xr1"	Homeostatic microglial	Tissue	Brain	32209470	Cell Rep	Chronic Peripheral Inflammation Causes a Region-Specific Myeloid Response in the Central Nervous System.	GSE145708
5330	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a2, Col1a1, Dcn, Fn1"	Fibroblasts	Cell line	Brain	31315047	Cell Rep	Conversion of Astrocytes and Fibroblasts into Functional Noradrenergic Neurons	GSE132184
5331	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Hes5, Sla1a3"	Astrocytes	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5332	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Pax6	Granule neurons	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5333	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	Mki67	Intermediate glial progenitor cells	Tissue	Brain	30982771	Cell Stem Cell	Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis	GSE122871
5334	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Neurog1	Intermediate progenitors	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5335	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Eomes, Neurod1, Gadd45g, Sstr1"	Intermediate progenitors	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5336	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"P2RY12, P2RY13, CX3CR1, TMEM119, CD9, TREM2, LPL, ITGAX"	Disease-associated microglia	Tissue	Brain	31375314	Neuron	Development of a Chimeric Model to Study and Manipulate Human Microglia In Vivo	GSE133436
5337	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ifit3, Isg15"	Activated macrophages	NA	Brain	32336197	Circ Res	Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression	NA
5338	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Snap25, Syt1"	Neurons	Cell line	Brain	31447324	Cell Metab	Glucose-Dependent Insulinotropic Polypeptide Receptor-Expressing Cells in the Hypothalamus Regulate Food Intake	NA
5339	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mal, Klk6"	Oligodendrocytes	Cell line	Brain	31447324	Cell Metab	Glucose-Dependent Insulinotropic Polypeptide Receptor-Expressing Cells in the Hypothalamus Regulate Food Intake	NA
5340	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aqp4, S100b, Slc1a3"	Astrocytes	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5341	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Hoxa2, Mroh2a, Hoxb2"	Glutamatergic neurons	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5342	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Cx3cr1, C1qb, C1qa"	Immune cells	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5343	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, Lhfpl3, Sox10"	Oligodendrocytes	NA	Brain	31474569	Cancer Cell	Single-Cell Transcriptomics in Medulloblastoma Reveals Tumor-Initiating Progenitors and Oncogenic Cascades during Tumorigenesis and Relapse	GSE120974
5344	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Leukocytes	PTPRC	Leukocytes	Organoids	Brain	30827680	Cell	Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain	GSE115626
5345	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Ccnd2, Olig1, Meg3"	Oligodendrocyte progenitors	Tissue	Brain	31539496	Cell	"Rapid Generation of Somatic Mouse Mosaics with Locus-Specific, Stably Integrated Transgenic Elements"	"GSE117154, GSE131675, GSE131672, GSE131940, GSE131873"
5346	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Arachnoid barrier cells	"Slc6a13, Gja1, Slc47a1"	Arachnoid barrier cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5347	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Cd209a	Dendritic cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5348	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Endothelial cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5349	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Sox11	Immature neurons	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5350	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Tmem119	Microglia cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5351	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cd44, Plac8"	Monocytes	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5352	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Pdgfra	Oligodendrocyte precursors	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5353	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Cldn11	Oligodendrocytes	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5354	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Cldn5, Acta2"	Vascular smooth muscle cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5355	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Apoe, Nfkbia, Itgax, Axl"	Inflammatory macrophages	Tissue	Brain	32209470	Cell Rep	Chronic Peripheral Inflammation Causes a Region-Specific Myeloid Response in the Central Nervous System.	GSE145708
5356	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"C3, C1pc, Cxcl13, Ccl2, Apoe, Cd9"	Inflammatory macrophages	Tissue	Brain	32209470	Cell Rep	Chronic Peripheral Inflammation Causes a Region-Specific Myeloid Response in the Central Nervous System.	GSE145708
5357	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Il1b	Inflammatory macrophages	NA	Brain	32336197	Circ Res	Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression	NA
5358	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Clu	Astrocytes	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
5359	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Ccr2	Monocytes	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
5360	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Npy	Neurons	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
5361	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Pf4	Macrophages	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5362	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mrc1, F13a1"	Macrophages	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5363	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Apoe	Astrocytes	Tissue	Brain	31695190	Nat Struct Mol Biol	An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome	NA
5364	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Snap25, Neurod6, Gad1"	Gabaergic neurons	Tissue	Brain	31695190	Nat Struct Mol Biol	An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome	NA
5365	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Snap25, Neurod6, Gad1"	Glutamatergic neurons	Tissue	Brain	31695190	Nat Struct Mol Biol	An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome	NA
5366	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	C1qb	Microglia cells	Tissue	Brain	31695190	Nat Struct Mol Biol	An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome	NA
5367	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mog	Oligodendrocytes	Tissue	Brain	31695190	Nat Struct Mol Biol	An ultra high-throughput method for single-cell joint analysis of open chromatin and transcriptome	NA
5368	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Il4ra, Il10ra, Stat3, Stat6"	M2-like macrophages	NA	Brain	32336197	Circ Res	Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression	NA
5369	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgal, F10, Gda"	Macrophages	Tissue	Brain	31902528	Neuron	TREM2 Regulates Microglial Cholesterol Metabolism upon Chronic Phagocytic Challenge	GSE130627
5370	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD64, F4, F80, CD45"	Macrophages	Tissue	Brain	32284604	Nat Neurosci	"Profiling peripheral nerve macrophages reveals two macrophage subsets with distinct localization, transcriptome and response to injury"	NA
5371	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cd68	Macrophages	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5372	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd163, Cx3cr1, P2ry12, Tmem119"	Non-parenchymal macrophages	Tissue	Brain	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5373	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd163, Cd206, Mrc1"	Perivascular macrophage	Tissue	Brain	30269986	Neuron	PDGFRb Cells Rapidly Relay Inflammatory Signal from the Circulatory System to Neurons via Chemokine CCL2	GSE112436
5374	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cd163	Perivascular macrophage	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5375	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aldoc, Gfap, Aqp4, Slc1a3"	Astrocytes	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5376	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Slc17a6, Tbr1, Bhlhe22, Bhlhb5"	Cortical excitatory neurons	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5377	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Tie1, Tek, Vwf"	Endothelial cells	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5378	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Hba-a1	Erythrocytes	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5379	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ms4a6d, Cybb, Tgfbi, Slamf7, Isg20, Smox, Apoe, Ms4a7"	Macrophages	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5380	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Dlx1, Dlx2, Lhx6"	Forebrain inhibitory neurons	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5381	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad2, Dlx5, Dlx6"	Forebrain inhibitory neurons	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5382	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Lyz2	Macrophages	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5383	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Hexb, Ly86"	Microglia cells	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5384	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Fyn, Mbp, Mog, Mal, Plp1"	Oligodendrocytes	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5385	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Atoh1, Olig3, Pcsk9, Barhl1"	Pontine mossy fiber neurons	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5386	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gpr88, Foxp1"	Striatal medium spiny neurons	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5387	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gbx2	Thalamic neurons	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5388	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta2	Vascular smooth muscle cells	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5389	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aldoc	Astrocytes	Tissue	Brain	31780669	Nat Commun	Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets	NA
5390	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cdh5	Endothelial cells	Tissue	Brain	31780669	Nat Commun	Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets	NA
5391	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Tbr1	Excitatory neurons	Tissue	Brain	31780669	Nat Commun	Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets	NA
5392	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gad1	Inhibitory neurons	Tissue	Brain	31780669	Nat Commun	Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets	NA
5393	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Olig1	Oligodendrocytes	Tissue	Brain	31780669	Nat Commun	Automated optimized parameters for T-distributed stochastic neighbor embedding improve visualization and analysis of large datasets	NA
5394	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Trem2, C1qa"	TREM2-hi macrophage	NA	Brain	32336197	Circ Res	Regulatory T Cells License Macrophage Pro-Resolving Functions During Atherosclerosis Regression	NA
5395	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Cx3cr1, Tmem119"	Microglia cells	Tissue	Brain	31902528	Neuron	TREM2 Regulates Microglial Cholesterol Metabolism upon Chronic Phagocytic Challenge	GSE130627
5396	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aqp4, Gja1"	Astrocytes	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5397	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Vtn, Itm2a"	Endothelial cells	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5398	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Slc17a7, Satb2, Col5a1, Sdk2"	Excitatory neurons	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5399	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Gad2, Tac1, Penk, Sst, Npy"	Inhibitory neurons	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5400	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"C1qa, Csf1r"	Microglia cells	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5401	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mog, Cldn11"	Oligodendrocytes	Tissue	Brain	31932797	Nat Med	Human and Mouse single-nucleus transcriptomics reveal TREM2-dependent and TREM2-independent cellular responses in Alzheimer disease.	GSE140511
5402	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	NA	Naive T cells	Tissue	Brain	32702313	Cell	Microglia Require CD4 T Cells to Complete the Fetalto-Adult Transition	GSE144038
5403	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Id3, Ptn"	Neural progenitors	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5404	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Nes	Neural stem cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5405	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Nes	Neural stem cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5406	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Thbs4, Gja1"	Neural stem cells	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5407	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nestin, Olig2"	Neural stem cells	Tissue	Brain	32294450	Cell Rep	Medulloblastoma Arises from the Persistence of a Rare and Transient Sox2 + Granule Neuron Precursor	GSE118068
5408	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nestin, Vimentin, Prom1, Thbs4"	Neural stem cells	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5409	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	"Eomes, Neurod4, Slc17a6, Mpped1, Calb2"	Neuroblast 1	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5410	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	"Sox11, Bhlhe22, Neurod2, Gal, Igfbpl1"	Neuroblast 2	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5411	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	"Sox10, Csf1r, Vtn, Tac1, Penk"	Neuroblasts	Tissue	Brain	32758425	Cell Stem Cell	A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury	GSE139842
5412	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	"Gad1, Gad2, Dlx1, Dlx2, Sp8"	Neuroblasts	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5413	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Scn11a, Ret, App, Trpv2, Dync1h1"	Neuron (n-1)	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5414	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Sncg, Synpr, Ngfrap1, Prph, Nrn1"	Neuron (n-2)	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5415	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Camk2a, Auts2, Dcx, Nyap1, Fus"	Neuron morphogenesis	Tissue	Brain	30728335	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in mice.	GSE122730
5416	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Camk2a, Nyap1, Auts2, Fus, Dcx"	Neuron morphogenesis	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5417	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gadd45g, Hes6"	Neuron progenitors	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5418	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Homer2, Tubb3"	Neuronal cells	Cell line	Brain	31315047	Cell Rep	Conversion of Astrocytes and Fibroblasts into Functional Noradrenergic Neurons	GSE132184
5419	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Scn11a, App, Dync1h1, Ret, Trpv2"	Neuronal cells 1	Tissue	Brain	30728335	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in mice.	GSE122730
5420	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Sncg, Ngfrap1, Nrn1, Synpr, Prph"	Neuronal cells 2	Tissue	Brain	30728335	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in mice.	GSE122730
5421	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Sox11, Stmn2"	Neuronal precursors	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5422	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Dlx1	Neuronal progenitors and precursors derived from the ganglionic eminences	Tissue	Brain	29513653	Nature	Developmental diversification of cortical inhibitory interneurons	GSE104158
5423	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Id3, Rpl32, Cdk4, Nes, Sox2"	Neuronal stem cells	Tissue	Brain	29746837	Cell Host Microbe	An Immunocompetent Mouse Model of Zika Virus Infection.	GSE112711
5424	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Cdk1, Sox11"	Neuronal-restrictedprecursors	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5425	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aqp4	Astrocytes	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5426	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Flt1	Endothelial cells	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5427	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a7	Excitatory neurons	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5428	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gad1	Inhibitory neurons	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5429	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Apbb1ip	Microglia cells	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5430	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mog	Oligodendrocytes	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5431	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Cd44, S100a9"	Neutrophils	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5432	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Ccrl2	Neutrophils	Tissue	Brain	31659342	Nat Neurosci	Stem-cell-derived human microglia transplanted in mouse brain to study human disease	GSE137444
5433	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aqp4	Astrocytes	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5434	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Flt2	Endothelial cells	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5435	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	NA	Glutamatergic neurons	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5436	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Chat, Npy"	Interneurons	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5437	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Cx3cr1	Microglia cells	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5438	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Sp9, Ppp1r1b, Drd1, Drd2"	Spiny projection neurons	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5439	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxp2, Drd1, Tac1, Foxp2"	DSPNs	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5440	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxp2, Drd2, Penk"	ISPNs	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5441	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxp2, Casz1"	ESPNs	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5442	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxp2, Sox4"	ImSPNs	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5443	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxp2, Drd2, Drd1, Tac1"	DdSPNs	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5444	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxp2, Ppp1r1b"	Mature SPN	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5445	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Gadd45g, Hes6"	Newly committed progenitors	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5446	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Cldn10, Gfap"	Astrocytes	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5447	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Acvrl1"	Endothelial cells	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5448	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Neu4, Dcx"	Immature neurons	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5449	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"C1qa, Trem2"	Microglia cells	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5450	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Lhx5, Syt1"	Neurons	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5451	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mag, Opalin"	Oligodendrocytes	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5452	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Scl6a11, Ntsr2"	Astrocytes	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5453	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Itm2a49, Flt1"	Endothelial cells	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5454	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Syt1, Snap25"	Excitatory neurons	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5455	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Npy51, Nr2f2"	Gabaergic neurons	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5456	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"P2ry12, C1qa, Cx3cr1"	Microglia cells	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5457	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Opc, Pdgfralpha, Olig2"	Oligodendrocyte progenitors	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5458	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Cldn11, Cnp"	Oligodendrocytes	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5459	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Pdgfra, Ppp1r14b, Ascl1, Btg2, Hes6"	Pri-OPCs	Tissue	Brain	30982771	Cell Stem Cell	Single-Cell Transcriptomics Uncovers Glial Progenitor Diversity and Cell Fate Determinants during Development and Gliomagenesis	GSE122871
5460	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vglut2, Prph, Tubb3, Nefl, Uchl1, Phox2b, Prdm12."	Sensory neurons	Tissue	Brain	32259485	Cell	Defining the Design Principles of Skin Epidermis Postnatal Growth	GSE145216
5461	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Lxn, Cpe, Pax3, Fgfbp3, Wnt7b, Lmo1, Hes5, Nrarp, Vcam1, Vim, Nell2, Ednrb, Irx3, Ttyh1, Fgfr3, Pgpep1, Sall3, Fam181a, Sox9, Dlk1, Fabp7, Ppp1r1a, Pmp22, Irx5, Rgma, Slc25a5, Tcf7l2, E130114P18Rik, Meis1, Ptx3, Adora2b, Tal2, Epha3, Acss1, Cdh4, Ephb1, U"	P2 progenitors	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5462	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79	B cells	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5463	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn1, Slc16a1"	Blood nerve barrier endothelial cellss	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5464	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Fn1, Fgfr1, Col1a, Col3a"	Fibroblasts	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5465	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Lyve1, Prox1"	Lymphatic endothelial cells (LECs)	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5466	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Lyz2	Myeloid cells	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5467	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Egfl7, Pecam1"	Vascular endothelial cells	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5468	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Acta2, Tagln, Tpm2"	Vascular smooth muscle cells	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5469	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Vtn	Pericytes	Tissue	Brain	30096314	Cell	Molecular Architecture of the Mouse Nervous System	NA
5470	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Rgs5	Pericytes	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5471	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Rgs5	Pericytes	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5472	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Cldn5, Kcnj8"	Pericytes	Tissue	Brain	31551601	NAT NEUROSCI	Single-cell transcriptomic profiling of the aging Mouse brain	GSE129788
5473	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Kcnj8	Pericytes	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5474	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Pdgfrb	Pericytes	Tissue	Brain	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
5475	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rgs5, Pdgrfb"	Pericytes	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5476	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Ascl1, Dlx2"	Progenitor cells	Tissue	Brain	32130906	Cell Rep	Single-Cell Analysis of Foxp1-Driven Mechanisms Essential for Striatal Development.	GSE125290
5477	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Hes5	Progenitor cells	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5478	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"CD45, NK1.1, DX5, Cstb, Ctsc"	NK1AD	Tissue	Brain	32503894	The Journal of Immunology	Depletion of NK Cells Improves Cognitive Function in the Alzheimer Disease Mouse Model	GSE142853
5479	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"CD45, NK1.1, DX5, Ctsc, Ctsd, Ccl3, Ccl4"	NK1a	Tissue	Brain	32503894	The Journal of Immunology	Depletion of NK Cells Improves Cognitive Function in the Alzheimer Disease Mouse Model	GSE142853
5480	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"CD45, NK1.1, DX5, Ctsc, Ctsd, Ccl3, Ccl4"	NK1b	Tissue	Brain	32503894	The Journal of Immunology	Depletion of NK Cells Improves Cognitive Function in the Alzheimer Disease Mouse Model	GSE142853
5481	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"CD45, NK1.1, DX5, Xcl1"	NK2	Tissue	Brain	32503894	The Journal of Immunology	Depletion of NK Cells Improves Cognitive Function in the Alzheimer Disease Mouse Model	GSE142853
5482	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Fgfr3, Prkacb, Plce1, Pomc"	Astrocytes 1	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5483	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Mapk3, Pomc"	Astrocytes 2	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5484	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Prkar2a	Astrocytes 3	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5485	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pde3a, Pomc"	Endothelial cells	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5486	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Prkar2b, Pik3r2"	Microglia cells	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5487	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Pik3r3, Gab1, Fgfr1, Fgfr2, Plcb1, Agrp, Pomc"	Oligodendrocytes 1	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5488	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Pik3ca	Oligodendrocytes 2	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5489	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Gab2, Akt1, Prkar2b, Map2k2, Pik3r1, Pomc, Jak2, Pik3r2"	Oligodendrocytes 3	Tissue	Brain	32507042	Hypertension	Single-Nucleus RNA Sequencing of the Hypothalamic Arcuate Nucleus of C57BL/6J Mice After Prolonged Diet-Induced Obesity	NA
5490	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Twist2"	Fibroblasts	Cell line	Brain	32523990	Sci Adv	Generation of self-organized sensory ganglion organoids and retinal ganglion cells from fibroblasts.	PRJNA597624
5491	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	CGRP	Peptidergic nociceptive neurons	Cell line	Brain	32523990	Sci Adv	Generation of self-organized sensory ganglion organoids and retinal ganglion cells from fibroblasts.	PRJNA597624
5492	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Trpv2, TrkC, Brn3a"	Sensory neurons	Cell line	Brain	32523990	Sci Adv	Generation of self-organized sensory ganglion organoids and retinal ganglion cells from fibroblasts.	PRJNA597624
5493	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Gfap, Fabp7, Slc1a3"	Astrocytes	NA	Brain	32579914	Cell Rep	NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma	GSE150752
5494	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Aif1, Cx3cr1, Adgre1"	Microglia cells	NA	Brain	32579914	Cell Rep	NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma	GSE150752
5495	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Cspg4, Pdgfra, Cntn1"	Oligodendrocytes	NA	Brain	32579914	Cell Rep	NeuroD1 Dictates Tumor Cell Differentiation in Medulloblastoma	GSE150752
5496	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Ptf1a	Ptf1a neuronal progenitors	Tissue	Brain	30320766	Nat Biotechnol	Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells	PRJNA428979
5497	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	GFAP	Astrocytes	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5498	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad2, PV"	Interneurons	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5499	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Il1rl1, Tmem119, CD11b, CD45"	Microglia cells	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5500	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	NeuN	Neurons	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5501	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Olig2	Oligodendrocytes	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5502	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Dcx	Progenitor_immature neurons	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5503	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Socs2	Pyramidal neurons	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5504	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Satb2	Pyramidal neurons	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5505	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Sv2b	Pyramidal neurons	Organoids	Brain	32615087	Cell	Microglial Remodeling of the Extracellular Matrix Promotes Synapse Plasticity	GSE150714
5506	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Brn3a, Brn3b, Isl1, Thy1.2, Sncg, Math5, Rbpms, RPF-1"	Radial glia cells	Cell line	Brain	32523990	Sci Adv	Generation of self-organized sensory ganglion organoids and retinal ganglion cells from fibroblasts.	PRJNA597624
5507	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aldh1l1	Astrocytes	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5508	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Gfap, Aldh1l1"	Astrocytes	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5509	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Tfap2c, Hopx, Rhcg, Vnn1, Wnt8b"	Radial glia-like cells	Tissue	Brain	29335606	Nat Neurosci	Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing	GSE95753
5510	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Flt1, Kdr"	Endothelial cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5511	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	Hbb-bs	Red blood cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5512	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	Hbb-bs	Red blood cells	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5513	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Dock2	Immune cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5514	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"C1qb, Tgfbr1"	Microglia cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5515	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, Olig2"	Oligodendrocyte precursors	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5516	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Abcc9, Pdgfrb"	Smooth muscle cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	NA
5517	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD69, ST2"	Residency T cell	Tissue	Brain	32702313	Cell	Microglia Require CD4 T Cells to Complete the Fetalto-Adult Transition	GSE144038
5518	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	S100a9	Granulocytes	Tissue	Brain	32702313	Cell	Microglia Require CD4 T Cells to Complete the Fetalto-Adult Transition	GSE144038
5519	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Cxc3r1, P2ry12, Tmem119"	Microglia cells	Tissue	Brain	32702313	Cell	Microglia Require CD4 T Cells to Complete the Fetalto-Adult Transition	GSE144038
5520	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	S100a4	Monocytes	Tissue	Brain	32702313	Cell	Microglia Require CD4 T Cells to Complete the Fetalto-Adult Transition	GSE144038
5521	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Slc1a3, Gfap, Clu"	Astrocytes	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
5522	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Itgam, Cx3cr1, Csf1r"	Microglia cells	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
5523	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Syp	Neurons	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
5524	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Plp1	Oligodendrocytes	Tissue	Brain	32702314	Cell	Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer Disease	GSE152506
5525	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Gfap, Id3"	Astrocytes	Tissue	Brain	32758425	Cell Stem Cell	A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury	GSE139842
5526	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Chrdl1	Astrocytes	Tissue	Brain	32758425	Cell Stem Cell	A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury	GSE139842
5527	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	AC1	Astrocytes	Tissue	Brain	32758425	Cell Stem Cell	A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury	GSE139842
5528	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Il33, Id3"	Astrocytes	Tissue	Brain	32758425	Cell Stem Cell	A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury	GSE139842
5529	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	AC2	Astrocytes	Tissue	Brain	32758425	Cell Stem Cell	A Widespread Neurogenic Potential of Neocortical Astrocytes Is Induced by Injury	GSE139842
5530	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Lxn, Hes5, Nrarp"	Rostral pretectal neural progenitor	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5531	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Pdlim3, Helt, Fst"	Rostral thalamic neuronal progenitor	Organoids	Brain	30872278	Development	Defining developmental diversification of diencephalon neurons through single cell gene expression profiling	GSE122012
5532	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"S100b, Agt"	Astrocytes	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5533	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Neurod2, Tbr1, Satb2"	Cortical excitatory neurons	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5534	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Plvap, Esam"	Endothelial cells	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5535	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Sox10, Olig1, Mbp, Enpp6, Mag"	Immature oligodendrocytes	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5536	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Aif1, Cx3cr1"	Immune cells	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5537	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Sox10, Olig1, Mbp, Mog, Mag"	Mature oligodendrocytes	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5538	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Pdgfra, Sox10, Olig2"	Oligodendrocyte precursors	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5539	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amplifying cells	"Egfr, Ascl1, Dlx1, Dlx2"	Transit amplifying cells	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5540	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Pdgfrb, Myh11, Mylk"	Vasculature-associated mesenchymal cells	Tissue	Brain	32783944	Cell Rep	Single-Cell Profiling Shows Murine Forebrain Neural Stem Cells Reacquire a Developmental State when Activated for Adult Neurogenesis.	GSE152281
5541	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	NA	Schwann cells	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5542	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	NA	Schwann cells	NA	Brain	30728355	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in Mouse	"GSE122999, GSE122730"
5543	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	Mpz	Schwann cells	Tissue	Brain	31768071	Nature Genetics	Stalled developmental programs at the root of pediatric brain tumors	GSE133531
5544	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	CD11b	Microglia cells	Tissue	Brain	32795415	Cell	Ubiquitin Ligase COP1 Suppresses Neuroinflammation by Degrading c/EBPbeta in Microglia.	GSE145454
5545	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Gap43, Tac1, Bdnf"	Schwann cells 1	Tissue	Brain	30728335	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in mice.	GSE122730
5546	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Plp1, Fabp7, Vim, Qk, Cryab"	Schwann cells 2	Tissue	Brain	30728335	JCI Insight	Cxcr3-expressing leukocytes are necessary for neurofibroma formation in mice.	GSE122730
5547	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Flt1, Pecam1, and Cdh5, Sncaip, Alpl, Alox12, B4galnt1, Glul, Syt15, Tpgs2, Fam198b, Antxr1, Eml1, Gm609, Rnf144a, Stom, Prdx4, Aig1, Arhgef25, Stc1, Plat, Peak1, Tec, Efnb2, Fbxo7, Unc5b, Tpst1, Hey1, Cpm, Hrct1, Unc119b, Hbegf, Tbxa2r, Spry4, Scube2, Plcb1, Hlx, Arl15, Tsc22d1, Filip1, A430090L17Rik, Plk2, Slc36a1"	AEC1	Tissue	Brain	32887883	Nat Commun	Pharmacologically reversible zonation-dependent Endothelial cells transcriptomic changes with neurodegenerative disease associations in the aged brain	GSE147693
5548	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Flt1, Pecam1, and Cdh5, Egr1, Mgst1, St8sia2, Entpd1, Zbp1, Cables2, Cthrc1, Msx1, St8sia6, Cbr3, Irf6, Lcat, Olfml2a, Slc27a3, Col18a1, Fchsd2, Prkcd, Ifitm3, Mmrn2, Gata2, Fos, Marcks, Edn1, Kdm6b, Eps8l2, P2ry2, Pfkfb3, Snx10, Ssfa2, Crispld1, Prr13, Atl2, Galk1, Kazald1, Dsp, Sncg, Rasd1, Nebl, Gadd45b, Lama3, Bmx"	AEC2	Tissue	Brain	32887883	Nat Commun	Pharmacologically reversible zonation-dependent Endothelial cells transcriptomic changes with neurodegenerative disease associations in the aged brain	GSE147693
5549	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Flt1, Pecam1, and Cdh5, Dll4, Rasgrp3, Akr1c14, Slc25a33, Smarca2, Ets2, Rcan2, Sema6d, Gja1, Enpp2, Angpt2, Col4a3, Prdm1, Cdc42ep3, Hdac9, Pde4b, Arhgap18, Bcl2, Htra3, Gpr85, Cyp2d22, Itga4, Trak2, Nrp1, Camk2n1, Nid2, Lrrn3, Plekhh2, Rgcc, Stra6, Rgl1, Pcx, Slc1a1, Osgin1, Klhl6, Cxcl12, Spry1"	CapEC	Tissue	Brain	32887883	Nat Commun	Pharmacologically reversible zonation-dependent Endothelial cells transcriptomic changes with neurodegenerative disease associations in the aged brain	GSE147693
5550	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Flt1, Pecam1, and Cdh5, Nrp2, Frmd5, Tmem98, Pnkd, Atp8a1, Tmem37, Stx3, Pak1, Pitpnm2, Car14, Jak3, Tspan17, Serpinb9, Unc13c, Fcgrt, Pglyrp1, Kcp, Slc40a1, Slc38a3, Ctla2b, Tmtc2, Irf5, Nos2, Rell1, Hcn2, Coro2b, Baiap2, Rab4a, Pfkl, Trib2, Prr5l, Tmsb10, Ndnf, Car4, Slc38a5, Fmo2, Cebpd, St6gal1, AU021092, Pcdh19"	VcapEC	Tissue	Brain	32887883	Nat Commun	Pharmacologically reversible zonation-dependent Endothelial cells transcriptomic changes with neurodegenerative disease associations in the aged brain	GSE147693
5551	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Flt1, Pecam1, and Cdh5, Dixdc1, Nr2f2, Lbp, Adk, Ltc4s, Tspan9, Tcea3, Ndufa8, Lrrc8b, Chn2, Prcp, Icam1, Il1r1, Tbc1d2b, Nckap5, Gm7694, Bst1, Sdk1, Lcn2, Fmo1, Ctsc, Gpr182, Gm5127, Cysltr1, Hspb8, Prpf40b, Rp1, Mxra8, Prdm5, Itga3, Hs3st1, Anxa2, Golm1, Homer3, Atp1b1, Nampt, Prrt4, Sytl2, Gjc1, Actn1, Klk8, Ddah1"	VEC	Tissue	Brain	32887883	Nat Commun	Pharmacologically reversible zonation-dependent Endothelial cells transcriptomic changes with neurodegenerative disease associations in the aged brain	GSE147693
5552	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Flt1, Pecam1, and Cdh5, Tmem176b, Tgtp1, Id2, Ptn, Gngt2, Tpd52l1, Frem2, Hyal2, Ifi27l2a, Tln2, Slc6a6, Car7, Vcam1, Klf4, Rfk, P2ry1, S100a10, Ehd1, Plec, S100a11, Pla2g4a, Cd9, Pdgfa, Ntn1, Thbd, C530008M17Rik, Aldh1a3, Kcnb1, Tnfrsf11a, Klf10, Carhsp1, Aldh1a1, Wnt5a, Icosl, Cfb, Myof, Adh1, Epha4, Tgm2, Slfn2"	AvEC	Tissue	Brain	32887883	Nat Commun	Pharmacologically reversible zonation-dependent Endothelial cells transcriptomic changes with neurodegenerative disease associations in the aged brain	GSE147693
5553	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alpha cells	Gcg	Alpha cells	Organoids	Brain	32955435	eLife	Genetic mapping of etiologic brain cell types for obesity	"GSE74672, GSE87544, GSE113576, GSE93374, GSE125065, GSE109774, SRP135960"
5554	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Agrp	Mediobasal hypothalamic agouti related peptide-expressing neurons	Organoids	Brain	32955435	eLife	Genetic mapping of etiologic brain cell types for obesity	"GSE74672, GSE87544, GSE113576, GSE93374, GSE125065, GSE109774, SRP135960"
5555	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Drds	Pancreatic medium spiny neurons	Organoids	Brain	32955435	eLife	Genetic mapping of etiologic brain cell types for obesity	"GSE74672, GSE87544, GSE113576, GSE93374, GSE125065, GSE109774, SRP135960"
5556	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Slc17a7, Slc17a6, Nrn1, Neurod1, Neurod2"	Excitatory neurons	Tissue	Brain	32973039	Genome Res	Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain	GSE142274
5557	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Dcx, Gad1, Gad2, Dlx6, Dlx1, Dlx5, Dlx2"	Inhibitory neurons	Tissue	Brain	32973039	Genome Res	Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain	GSE142274
5558	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Akap7	Oligodendrocytes	Tissue	Brain	32973039	Genome Res	Agonist-induced functional analysis and cell sorting associated with single-cell transcriptomics characterizes cell subtypes in normal and pathological brain	GSE142274
5559	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ptprc, Cd3e"	T cells	Cell line	Brain	31548728	Nature Biotechnology	In vivo CRISPR screening in CD8 T cells with AAV_Sleeping Beauty hybrid vectors identifies membrane targets for improving immunotherapy for glioblastoma	RJNA553676
5560	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Iglc3, Ms4a1, Cd19, Jchain1"	B cells	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5561	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"H2-ab1, Ifitm1, Cd86, Siglech, Klk1, Cd300c"	Dendritic cells	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5562	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Cd81, Tmem119, Sparc, P2ry12, Ccl2, Ccl7"	Microglia cells	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5563	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"F13a1, Hp, Gsr, Cd300a"	Monocytes	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5564	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Klrb1c, Klre1, Xcl1, Bcl2"	Natural killer (NK) cells	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5565	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Slc1a2	Astrocytes	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5566	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Endothelial cells	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5567	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Pde10a, Elavl2"	Interneurons	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5568	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Hexb	Microglia cells	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5569	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Pde10a	Neurons	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5570	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Vcan	Oligodendrocyte progenitors	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5571	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Plp2	Oligodendrocytes	Organoids	Brain	32999463	Nature	Negative feedback control of neuronal activity by microglia	GSE149897
5572	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ccl5, Cd2"	T cells	Tissue	Brain	32181251	Front Cell Dev Biol	Type 1 Interleukin-4 Signaling Obliterates Mouse Astroglia in vivo but Not in vitro	GSE140793
5573	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Mlc1, Slc1a3, Aldh1l1"	Astrocytes	Tissue	Brain	33031376	PLoS One	Isolation and transcriptional characterization of Mouse perivascular astrocytes	NA
5574	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Vascular/endothelial cells	Tissue	Brain	33031376	PLoS One	Isolation and transcriptional characterization of Mouse perivascular astrocytes	NA
5575	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	T cells	Tissue	Brain	32295886	Proc Natl Acad Sci U S A	Redefining the heterogeneity of peripheral nerve cells in health and autoimmunity.	GSE142541
5576	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prox1	Dentate granule neurons	Tissue	Brain	33037292	Commun Biol	Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography	NA
5577	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Wfs1	Pyramidal neurons	Tissue	Brain	33037292	Commun Biol	Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography	NA
5578	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Pax7	Alar-platederived neurons	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5579	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Tal1, Gata3"	Gabaergic neurons	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5580	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Pitx2	Tal1-independent gabaergic neurons	Tissue	Brain	33053343	Cell Rep	Molecular Fingerprint and Developmental Regulation of the Tegmental GABAergic and Glutamatergic Neurons Derived from the Anterior Hindbrain	GSE157964
5581	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	IBA1	Microglia cells	Tissue	Brain	33054973	eLife	A MAC2-positive progenitor-like microglial population is resistant to CSF1R inhibition in adult Mouse brain	GSE150169
5582	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd11b, Cx3cr1, Csf1r"	Myeloid cells	Tissue	Brain	33054973	eLife	A MAC2-positive progenitor-like microglial population is resistant to CSF1R inhibition in adult Mouse brain	GSE150169
5583	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Ntsr2	Astrocytes	Tissue	Brain	33057193	Nature	The cellular basis of distinct thirst modalities	GSE154048
5584	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Slco1c1	Endothelial cells	Tissue	Brain	33057193	Nature	The cellular basis of distinct thirst modalities	GSE154048
5585	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Ucma	Lamina terminalis astrocytes	Tissue	Brain	33057193	Nature	The cellular basis of distinct thirst modalities	GSE154048
5586	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Fcer1g for	Microglia cells	Tissue	Brain	33057193	Nature	The cellular basis of distinct thirst modalities	GSE154048
5587	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Ndrg4	Neurons	Tissue	Brain	33057193	Nature	The cellular basis of distinct thirst modalities	GSE154048
5588	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mag	Oligodendrocytes	Tissue	Brain	33057193	Nature	The cellular basis of distinct thirst modalities	GSE154048
5589	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Aldh1l1, Aldoc, Slc1a2, Gja1"	Astrocytes	Organoids	Brain	33086039	Neuron	Context-Specifific Striatal Astrocyte Molecular Responses Are Phenotypically Exploitable	GSE156628
5590	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Esam, Icam2, Apold1, Nostrin"	Endothelial cells	Organoids	Brain	33086039	Neuron	Context-Specifific Striatal Astrocyte Molecular Responses Are Phenotypically Exploitable	GSE156628
5591	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Cd68, Ptprc, Ccl3, Tnf"	Microglia cells	Organoids	Brain	33086039	Neuron	Context-Specifific Striatal Astrocyte Molecular Responses Are Phenotypically Exploitable	GSE156628
5592	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Rbfox3, Gabra1, Kcnq2, Cntn3"	Neurons	Organoids	Brain	33086039	Neuron	Context-Specifific Striatal Astrocyte Molecular Responses Are Phenotypically Exploitable	GSE156628
5593	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mog, Sox10, Mobp, Gjc2"	Oligodendrocytes	Organoids	Brain	33086039	Neuron	Context-Specifific Striatal Astrocyte Molecular Responses Are Phenotypically Exploitable	GSE156628
5594	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ctla-4, Icos"	Activated T cells	Tissue	Brain	32702313	Cell	Microglia Require CD4 T Cells to Complete the Fetalto-Adult Transition	GSE144038
5595	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Prf1, Lag3, Pdcd1, Havcr2"	CD8 T cells	Tissue	Brain	33113353	Cell	Human Primordial Germ Cells Are Specified from Lineage-Primed Progenitors	GSE134285
5596	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd4, Cd8a, Lat, Pdcd1, Gzmb"	T cells	Organoids	Brain	32999036	J Virol	Single-Cell RNA Sequencing Reveals the Diversity of the Immunological Landscape following Central Nervous System Infection by a Murine Coronavirus	NA
5597	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Pax6, Atoh1"	Unipolar brush cells/granule neuron progenitors (ubc/gn pro)	Tissue	Brain	31341285	Nature	Resolving medulloblastoma cellular architecture by single-cell genomics	GSE119926
5598	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular cells	"Myl9, Mgp"	Vascular cells	Tissue	Brain	32221280	Nat Commun	Human iPSC-derived mature microglia retain their identity and functionally integrate in the chimeric Mouse brain	GSE129178
5599	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular cells	Col1a2	Vascular cells	Tissue	Brain	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE110823
5600	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Hes1, Hex5"	Vz neural progenitor cells (npcs)	Tissue	Brain	30735127	eLife	Specification of diverse cell types during early neurogenesis of the Mouse cerebellum	GSE120372
5601	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Ptf1a	Vz progenitors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5602	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Ptf1a	Vz progenitors	Tissue	Brain	31043743	Nature	Childhood cerebellar tumours mirror conserved fetal transcriptional programs	GSE118068
5603	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Camk4, Th, Vip"	Interneurons	Tissue	Brain	33420488	Science	Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to Human prostate cancer progression.	NA
5604	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pluripotency cells	"CD44, CD24, ALDH-1, SOX2, OCT4, NANOG"	Pluripotency cells	Cell line	Breast	31308046	Cancer Res	SET Domain-Containing Protein 4 Epigenetically Controls Breast Cancer Stem Cell Quiescence	"GSE124888, GSE124887"
5605	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	"Ki67, PCNA"	Proliferating cells	Cell line	Breast	31308046	Cancer Res	SET Domain-Containing Protein 4 Epigenetically Controls Breast Cancer Stem Cell Quiescence	"GSE124888, GSE124887"
5606	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Quiescent cells	"HES1, TP53, BMP2, MKI67, TGFBR3, WNT10A"	Quiescent cells	Cell line	Breast	31308046	Cancer Res	SET Domain-Containing Protein 4 Epigenetically Controls Breast Cancer Stem Cell Quiescence	"GSE124888, GSE124887"
5607	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Set domain_containing protein 4-defined quiescent breast cancer stem cells	"SETD4, ANGPTL4, CA9"	Set domain_containing protein 4-defined quiescent breast cancer stem cells	Cell line	Breast	31308046	Cancer Res	SET Domain-Containing Protein 4 Epigenetically Controls Breast Cancer Stem Cell Quiescence	"GSE124888, GSE124887"
5608	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cxcr5, Cd154, Cd40l, Pdcd1, Maf, Il21"	T follicular helper cells (T fh)	Tissue	Breast	31730857	Cell	B Cells and T Follicular Helper Cells Mediate Response to Checkpoint Inhibitors in High Mutation Burden Mouse Models of Breast Cancer	GSE136206
5609	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	Epcam	Tumor cells	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5610	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Krt7, Krt18, Ccnd1, Epcam"	Breast tumors 4T1	Tissue	Breast	32117236	Front Immunol	Transcriptomic Features of T Cell-Barren Tumors Are Conserved Across Diverse Tumor Types.	NA
5611	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cancer stem cells	"Id3, Gpc3, Thy1, Sox10, Krt6"	Cancer stem cells	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5612	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cancer stem cells	"SETD4, Ki67, CD133"	Cancer stem cells	Cell line	Breast	31308046	Cancer Res	SET Domain-Containing Protein 4 Epigenetically Controls Breast Cancer Stem Cell Quiescence	"GSE124888, GSE124887"
5613	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdpn, Pdgfrb"	Cancer associated fibroblasts (CAFS)	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5614	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cd34, Pecam1"	Endothelial cells	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5615	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ptprc, Ncr1"	Natural killer (NK) cells	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5616	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Eomes, Pdcd1, Ctla4, Lag3, Tim3"	Cytotoxic T cells	Tissue	Breast	31730857	Cell	B Cells and T Follicular Helper Cells Mediate Response to Checkpoint Inhibitors in High Mutation Burden Mouse Models of Breast Cancer	GSE136207
5617	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Breast	31152164	Nat Genet	High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer.	GSE117309
5618	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col12a1, Efemp1"	Fibroblasts	Tissue	Breast	31152164	Nat Genet	High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer.	GSE117309
5619	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Adgre1, Mrc1"	Myeloid cells	Tissue	Breast	31541031	SCIENCE IMMUNOLOGY	Myeloid cell_synthesized coagulation factor X dampens antitumor immunity	NA
5620	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, Cd68"	Macrophages	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5621	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD19, CD20, Pax5, Jxhain, Ly6d"	B cells	NA	Breast	31611701	Nat Immunol	Multiplexed activation of endogenous genes by CRISPRa elicits potent anti-tumor immunity	GSE133983
5622	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ly75, Batf3, Clec10a, CD209A"	Dendritic cells	NA	Breast	31611701	Nat Immunol	Multiplexed activation of endogenous genes by CRISPRa elicits potent anti-tumor immunity	GSE133983
5623	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Ms4a7	Macrophages	Tissue	Breast	31152164	Nat Genet	High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer.	GSE117309
5624	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD14, Fcgr1, Adgre1"	Macrophages	NA	Breast	31611701	Nat Immunol	Multiplexed activation of endogenous genes by CRISPRa elicits potent anti-tumor immunity	GSE133983
5625	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Adgrd1, Csf1r, Msr1"	Macrophages	Tissue	Breast	32188939	Nature	A bioorthogonal system reveals antitumour immune function of pyroptosis.	"Genomics Data Center (NGDC) under accession number PRJCA002149 , (https"
5626	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Krt6	Mammary progenitors	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5627	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Epcam, Dsp"	Epithelial cells	Tissue	Breast	31881983	Breast Cancer Research	S100a4 upregulation in Pik3caH1047R;Trp53R270H;MMTV-Cre-driven mammary tumors promotes metastasis	GSE126351.
5628	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"CD11b, Itgam"	Myeloid cells	Tissue	Breast	31881983	Breast Cancer Research	S100a4 upregulation in Pik3caH1047R;Trp53R270H;MMTV-Cre-driven mammary tumors promotes metastasis	GSE126351.
5629	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ptprc, Csf3r"	Neutrophils	Cell line	Breast	30042390	Nat Commun	Targeting stromal remodeling and cancer stem cell plasticity overcomes chemoresistance in triple negative breast cancer	PRJNA369574
5630	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Col3a1, Dcn, Postn"	Fibroblasts	Tissue	Breast	32117236	Front Immunol	Transcriptomic Features of T Cell-Barren Tumors Are Conserved Across Diverse Tumor Types.	NA
5631	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Ly6g, Retnlg, Cd14, Cd68"	Ly6g+Cd68+ myeloid cells	Tissue	Breast	32117236	Front Immunol	Transcriptomic Features of T Cell-Barren Tumors Are Conserved Across Diverse Tumor Types.	NA
5632	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Adgre1, Mrc1, C1qa, Fcgr2b"	F4/80+Cd68+ myeloid cells	Tissue	Breast	32117236	Front Immunol	Transcriptomic Features of T Cell-Barren Tumors Are Conserved Across Diverse Tumor Types.	NA
5633	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79a, Cd79b, Ebf1"	B cells	Tissue	Breast	32188939	Nature	A bioorthogonal system reveals antitumour immune function of pyroptosis.	"Genomics Data Center (NGDC) under accession number PRJCA002149 , (https"
5634	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Cd4, Icos, Cd3d"	CD4 T cells	Tissue	Breast	32188939	Nature	A bioorthogonal system reveals antitumour immune function of pyroptosis.	"Genomics Data Center (NGDC) under accession number PRJCA002149 , (https"
5635	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Cd3g, Cd8a, Gzmb, Cd8b1"	CD8 T cells	Tissue	Breast	32188939	Nature	A bioorthogonal system reveals antitumour immune function of pyroptosis.	"Genomics Data Center (NGDC) under accession number PRJCA002149 , (https"
5636	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	"Mcpt8, Cd200r3, Gata2, Cpa3"	Mast cells	Tissue	Breast	32188939	Nature	A bioorthogonal system reveals antitumour immune function of pyroptosis.	"Genomics Data Center (NGDC) under accession number PRJCA002149 , (https"
5637	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klra3, Nkg7, Gzma, Ncr1"	Natural killer (NK) cells	Tissue	Breast	32188939	Nature	A bioorthogonal system reveals antitumour immune function of pyroptosis.	"Genomics Data Center (NGDC) under accession number PRJCA002149 , (https"
5638	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rgs5, Mcam"	Pericytes	PDX	Breast	32455670	Cancers (Basel)	Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer	NA
5639	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	"Itgax, Ccr9, Siglech"	Plasmacytoid dentritic cells	Tissue	Breast	32188939	Nature	A bioorthogonal system reveals antitumour immune function of pyroptosis.	"Genomics Data Center (NGDC) under accession number PRJCA002149 , (https"
5640	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"s Acta2, Ly6c1, Cdk1, Cd74, Crabp1, Cd53"	Cancer associated fibroblasts (CAFS)	PDX	Breast	32455670	Cancers (Basel)	Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer	NA
5641	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Mcam"	Endothelial cells	PDX	Breast	32455670	Cancers (Basel)	Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer	NA
5642	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	PDX	Breast	32455670	Cancers (Basel)	Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer	NA
5643	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdgfra, Dcn, Col1a1"	Fibroblasts	PDX	Breast	32455670	Cancers (Basel)	Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer	NA
5644	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Ptprc	Immune cells	PDX	Breast	32455670	Cancers (Basel)	Single-Cell Transcriptomic Analysis of Tumor-Derived Fibroblasts and Normal Tissue-Resident Fibroblasts Reveals Fibroblast Heterogeneity in Breast Cancer	NA
5645	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a2	Fibroblasts	Tissue	Breast	32840210	eLife	Single-cell RNA-sequencing reveals distinct patterns of cell state heterogeneity in Mouse models of breast cancer	GSE123366
5646	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Cited4, Cd36, Aqp5"	Neu-3	Tissue	Breast	32840210	eLife	Single-cell RNA-sequencing reveals distinct patterns of cell state heterogeneity in Mouse models of breast cancer	GSE123366
5647	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD3E, CD4, CD8A, Gzmb, Il7r"	T cells	NA	Breast	31611701	Nat Immunol	Multiplexed activation of endogenous genes by CRISPRa elicits potent anti-tumor immunity	GSE133983
5648	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cdh1, Epcam"	Epithelial cells	NA	Breast	33024122	Nat Commun	Adaptation and selection shape clonal evolution of tumors during residual disease and recurrence	PRJNA509416
5649	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Ddr2, Vim"	Mesenchymal cells	NA	Breast	33024122	Nat Commun	Adaptation and selection shape clonal evolution of tumors during residual disease and recurrence	PRJNA509417
5650	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd8a, Cd28, Pdcd1"	T cells	Tissue	Breast	32117236	Front Immunol	Transcriptomic Features of T Cell-Barren Tumors Are Conserved Across Diverse Tumor Types.	NA
5651	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Krt5, Krt14, Krt15"	Oral epithelial progenitor cells	Tissue	Buccal mucosae	30472156	Cell Stem Cell	Perivascular Fibro-Adipogenic Progenitor Tracing during Post-Traumatic Osteoarthritis	GSE120654
5652	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glutamatergic cns	"Meis2, Lhx2"	Glutamatergic cns	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5653	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Meningeal cells	Foxc1	Meningeal cells	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5654	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Midbrain clusters	Tlx3	Midbrain clusters	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5655	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Purkinje cells	"Calb1, Car8"	Purkinje cells	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5656	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Roof plate	"Lmx1a, Msx1"	Roof plate	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5657	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Hopx, Gdf10"	Bergmann glia cells	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5658	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Slc1a3	Astrocytes	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5659	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Hba-a2, Alas2, Hbb-bt, Fech"	Erythrocytes	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5660	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Pax2, Lbx1"	Gabaergic interneurons	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5661	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Atoh1, Pax6"	Glutamatergic neurons	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5662	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Tmem119, Itgam"	Microglia cells	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5663	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Sox10, Olig1"	Oligodendrocytes	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5664	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Id1, Msx3"	Early progenitor cells	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5665	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cd34, Pecam1"	Endothelial precursors	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5666	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Lhx1, Lhx5"	Gabaergic progenitors	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5667	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granular cells	Pax6	Granule neuron progenitors	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5668	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Hes5	Progenitor cells	Tissue	Cerebella	30220501	Current Biology	A Single-Cell Transcriptional Atlas of the Developing Murine Cerebellum	NA
5669	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cnv-ecs	"Top2a, Mki67"	PROLIFERATING CNV-ECS	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5670	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cnv-ecs	"Pgf, Rhoc, Fscn1, Mcam, Trp53i11, Lama4"	TIP CNV-ECS	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5671	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cnv-ecs	"Vwf, Mgp, Cfh, Cpe"	TRANSITIONING CNV-ECS	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5672	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cnv-ecs	"Aplnr, Selp, Mmp2, Mmp14"	IMMATURE CNV-ECS	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5673	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cnv-ecs	"Rgcc, Plpp1, Cd24a, Kdr"	NEOPHALANX CNV-ECS	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5674	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Peripheral cecs	"Gja4, Gkn3, Sox17, Hey1"	Arteries CECs	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5675	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Peripheral cecs	"Car4, Plvap"	Capillaries CECs	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5676	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Peripheral cecs	"Vwf, Selp"	Veins CECs	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5677	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Peripheral cecs	Prox1	Lymphatics CECs	Tissue	Choroid	32268117	Cell Metab	Single-Cell RNA Sequencing Maps Endothelial Metabolic Plasticity in Pathological Angiogenesis	GSE77199
5678	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Ly6C	Infiltrating monocytes	Tissue	Choroid	33038331	Dev Cell	Inflammation of the Embryonic Choroid Plexus Barrier following Maternal Immune Activation	NA
5679	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hec	Pmch	Hec	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5680	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Idc	"Otoa, Cdkn1c, Smoc2, Ptgds"	Idc	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5681	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ipcs	"Emid1, Npy"	Ipcs	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5682	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Iphc	Matn4	Iphc	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5683	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Iscs	"Sox2, Cdkn1b, Prsss23"	Iscs	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5684	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ko	"Calb1, Crabp1, Tectb"	Ko	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5685	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oc90	"Oc90, Cndp2, Vmo1"	Oc90	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5686	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Opcs	"Fam159b, Ppp1r2, A100b, Serpine2, Smagp"	Opcs	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5687	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Satellite cells	Plp	Satellite cells	Tissue	Cochlea	30063705	Plos Genetics	High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a coreprogramming factor	GSE85984
5688	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tympanic border cells	Emilin2	Tympanic border cells	Tissue	Cochlea	30063705	Plos Genetics	High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a coreprogramming factor	GSE85986
5689	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cx3cr1, Cd79a"	B cells	Tissue	Cochlea	30063705	Plos Genetics	High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a coreprogramming factor	GSE85988
5690	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	Nkg7	Natural killer T (NKT) cells	Tissue	Cochlea	30063705	Plos Genetics	High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a coreprogramming factor	GSE85989
5691	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Cnp, Cryab, Mbp, Mpz, Pmp22"	Glial cells	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5692	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hair cells	"Myo6, Myo7a, Pvalb, Cib2, Ccer2, Acbd7, Rprm, Cd164l2"	Hair cells	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5693	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hair cells	"Myo6, Myo7a, Pvalb, Cib2, Ccer2, Acbd7, Rprm, Cd164l2"	Hair cells	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5694	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cx3cr1, Cd79a"	Pan macrophages	Tissue	Cochlea	30063705	Plos Genetics	High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a coreprogramming factor	GSE85987
5695	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Hes5, Igfbpl1, Lfng, Prss23, S100a1"	DC3	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5696	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Apoe, Bmp4, Fbln2, Fst, Npnt"	CC/OSC	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5697	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Lgr5, Fgf3, Lfng, Hes5, Pdzk1ip1, Ppp1r2, S100a1, Serpine2"	DC1/2	Tissue	Cochlea	32404924	Nat Commun	Characterization of the development of the Mouse cochlear epithelium at the single cell level	GSE137299
5698	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	Plp	Schwann cells	Tissue	Cochlea	30063705	Plos Genetics5174	High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a coreprogramming factor	GSE85983
5699	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	Mpz	Schwann cells	Tissue	Cochlea	30063705	Plos Genetics	High-resolution transcriptional dissection of in vivo Atoh1-mediated hair cell conversion in mature cochleae identifies Isl1 as a coreprogramming factor	GSE85985
5700	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Cx3cr1, Fcgr4, Ms4a7, Cd53, Lyz2"	Immune cells	Tissue	Cochlea	32938973	Sci Rep	The immune response after noise damage in the cochlea is characterized by a heterogeneous mix of adaptive and innate immune cells	NA
5701	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Early endosomes	EEA1	Early endosomes	Tissue	Colon	32970988	Cell	Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption	GSE146131
5702	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Des"	Enteric smooth muscle	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5703	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	"Lgr5, Olfm4, Ascl2"	Intestinal stem cells	Tissue	Colon	33060802	Mucosal Immunol	"IL-22 receptor signaling in Paneth cells is critical for their maturation, microbiota colonization, Th17-related immune responses, and anti-Salmonella immunity"	GSE159423
5704	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Late-endosoma	"LAMP1, LAMP2, Rab7A"	Late-endosoma	Tissue	Colon	32970988	Cell	Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption	GSE146131
5705	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Acta2, Vim, Myh11"	Putative myofibroblast	Tissue	Colon	29875413	Nature	GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells	GSE113043
5706	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Acta2, Vim, Foxl1"	Subepithelial mesenchymal cells	Tissue	Colon	29875413	Nature	GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells	GSE113044
5707	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"GBP2, GBP2b, GBP3, GBP4, GBP5, GBP6, GBP7, GBP8, GBP9"	Activated human macrophages	Tissue	Colon	31375632	Proc Natl Acad Sci U S A	Immuno-PET identifies the myeloid compartment as a key contributor to the outcome of the antitumor response under PD-1 blockade.	NA
5708	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19"	Epithelial cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5709	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Lyve1	Lymphatic endothelial cells (LECs)	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5710	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Vascular endothelial cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5711	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts-like cells	"Dpt, Col6a2, Col1a2"	Fibroblasts-like cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5712	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"S100b, Gfap"	Glial cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5713	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	S100b	Glial cells	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5714	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Cd52, Cd45"	Hematopoietic cells	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5715	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ Integrin beta7+	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5716	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ CD34- CD16/32-	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5717	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ CD34+ CD16/32- CD115lo	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5718	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ CD34+ CD16/32- Flt3+ CD115hi	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5719	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ CD34+ CD16/32hi Ly6C-CD115lo	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5720	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ CD34+ CD16/32hi Ly6C+CD115lo	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5721	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ CD34+ CD16/32hi Ly6C+-CD115hi	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5722	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- c-Kit+ CD34+ CD16/32hi FcER+	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5723	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	NA	Lin- Sca1- CD34+ c-Kit- CD125+	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5724	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Interstitial cells	"Kit, Ano1"	Interstitial cells of Cajal	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5725	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	CD11b	Myeloid cells	Tissue	Colon	31375632	Proc Natl Acad Sci U S A	Immuno-PET identifies the myeloid compartment as a key contributor to the outcome of the antitumor response under PD-1 blockade.	NA
5726	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Arg1, CD45, Gpb2b, Bst1"	Arg1A macrophage	Tissue	Colon	30613266	Theranostics	Arg1 expression defines immunosuppressive subsets of tumor-associated macrophages.	GSE112865
5727	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Arg1, CD45, Sgk1, Pmepa1, Ms4a7"	Arg1B macrophage	Tissue	Colon	30613266	Theranostics	Arg1 expression defines immunosuppressive subsets of tumor-associated macrophages.	GSE112865
5728	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD11b, MHCII, F4, F80, CD103"	Interstitial macrophages	Tissue	Colon	32970988	Cell	Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption	GSE146131
5729	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"H2-Eb1, H2-Ab1, H2-Aa , H2-DMa , H2-DMb1, CXCL9, CXCL10, CCL5, CCL8, IL2rg, Stat1, Fcgr4, Fam26f"	Macrophages with an M1-type signature	Tissue	Colon	31375632	Proc Natl Acad Sci U S A	Immuno-PET identifies the myeloid compartment as a key contributor to the outcome of the antitumor response under PD-1 blockade.	NA
5730	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD45, CD11b, F4, F80, CD64, MHCII"	Macrophages	Tissue	Colon	32970988	Cell	Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption	GSE146131
5731	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rgs5, Pdgfrb"	Pericytes	Tissue	Colon	30270042	Cell	Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease	"GSE95459, GSE114374"
5732	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Colon	32367039	Cell Research	Transdifferentiation of tumor infiltrating innate lymphoid cells during progression of colorectal cancer	GSE142694
5733	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Colon	32367039	Cell Research	Transdifferentiation of tumor infiltrating innate lymphoid cells during progression of colorectal cancer	GSE142694
5734	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Colon	32367039	Cell Research	Transdifferentiation of tumor infiltrating innate lymphoid cells during progression of colorectal cancer	GSE142694
5735	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Colon	32367039	Cell Research	Transdifferentiation of tumor infiltrating innate lymphoid cells during progression of colorectal cancer	GSE142694
5736	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Colon	32367039	Cell Research	Transdifferentiation of tumor infiltrating innate lymphoid cells during progression of colorectal cancer	GSE142694
5737	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Rgs5	Pericytes	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5738	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	"Car1, Car2"	Mast cells progenitors	Tissue	Colon	32421753	PLoS Pathog	Trichinella spiralis-induced mastocytosis and erythropoiesis are simultaneously supported by a bipotent mast cell/erythrocyte precursor cell	GSE131059
5739	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Colon	33238123	Cell Rep	An IL-27-Driven Transcriptional Network Identifies Regulators of IL-10 Expression across T Helper Cell Subsets	GSE159208
5740	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Car1, Muc2, Car4, Krt19, Krt8, Krt18"	Epithelial cells	Tissue	Colon	32970988	Cell	Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption	GSE146131
5741	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Acta2, Dcn, Des, Lamb1, Lama4, Lamc1, Tpm2, Nid1"	Fibroblasts	Tissue	Colon	32970988	Cell	Macrophages Maintain Epithelium Integrity by Limiting Fungal Product Absorption	GSE146131
5742	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	CD4	CD4 T cells	Tissue	Colon	33022229	Immunity	"T Cell Receptor Is Required for Differentiation, but Not Maintenance, of Intestinal CD4 Intraepithelial Lymphocytes."	GSE157453
5743	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Sell	Naive T cell	Tissue	Colon	33238123	Cell Rep	An IL-27-Driven Transcriptional Network Identifies Regulators of IL-10 Expression across T Helper Cell Subsets	GSE159208
5744	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5745	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Lgr5, Axin2, Mki67"	Intestinal epithelial stem cells and transit-amplifying cells	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5746	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Atoh1, Muc2"	Goblet cells	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5747	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Atoh1, Reg4"	Deep crypt secretory cells	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5748	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Guca2a, Alpi, Aldh1l1"	Enterocytes	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5749	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Chga, Chgb, Neurod1"	Enteroendocrine cells	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5750	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Vim, Col1a1"	Stromal cells	Tissue	Colon	33306673	Plos Biol	Distinct populations of crypt-associated fibroblasts act as signaling hubs to control colon homeostasis	GSE151257
5751	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt13, Krt19, Muc4"	Conjunctival epithelial cells	Tissue	Cornea	31419300	Invest Ophthalmol Vis Sci	Single-Cell RNA Transcriptome Helps Define the Limbal/Corneal Epithelial Stem/Early Transit Amplifying Cells and How Autophagy Affects This Population	NA
5752	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cdh1, Pax6, Krt15"	Epithelial cells	Tissue	Cornea	31419300	Invest Ophthalmol Vis Sci	Single-Cell RNA Transcriptome Helps Define the Limbal/Corneal Epithelial Stem/Early Transit Amplifying Cells and How Autophagy Affects This Population	NA
5753	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Lum, Kera"	Mesenchymal cells	Tissue	Cornea	31419300	Invest Ophthalmol Vis Sci	Single-Cell RNA Transcriptome Helps Define the Limbal/Corneal Epithelial Stem/Early Transit Amplifying Cells and How Autophagy Affects This Population	NA
5754	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Committed opc	"Ptprz1, Serpine2, Ptgds, Car2, Il33"	Committed opc	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5755	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	NA	Myelin forming oligodendrocyte 1	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5756	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Ptgds, Car2"	Myelin forming oligodendrocyte 2	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5757	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Ptprz1, Serpine2, Ptgds, Car2"	Newly formed oligodendrocyte1	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5758	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Erg1, Dusp1, Fosb, Anxa5, Ptgds, Grm3, Car2, Il33"	Mature oligodendrocytes 1	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5759	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Klk6, Hopx, Anxa5, Car2"	Mature oligodendrocytes 2	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5760	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Klk6, Hopx, Anxa5, Ptgds, Car2"	Mature oligodendrocytes 3	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5761	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Erg1, Dusp1, Fosb, Klk6, Hopx, Anxa5, Ptgds, Grm3, Car2"	Mature oligodendrocytes 4	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5762	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Ptgds, Car2, Il33"	Mature oligodendrocytes 5	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5763	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Ptgds, Car2, Il33"	Mature oligodendrocytes 6	NA	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5764	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Ptprz1, Serpine2, Erg1, Dusp1, Fosb, Ptgds, Car2"	Oligodendrocyte progenitors	Tissue	Corpus callosum	33203872	Nat Commun	Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury	GSE128525
5765	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Gja1	Astrocytes	NA	Cortices	29220646	Molecular Cell	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq	NA
5766	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Flt1	Endothelial cells	NA	Cortices	29220646	Molecular Cell	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq	NA
5767	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a7	Excitatory neurons	NA	Cortices	29220646	Molecular Cell	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq	GSE106678
5768	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gad2	Inhibitory neurons	NA	Cortices	29220646	Molecular Cell	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq	NA
5769	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Ctss	Microglia cells	NA	Cortices	29220646	Molecular Cell	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq	GSE106678
5770	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mog, Enpp6"	Oligodendrocytes	NA	Cortices	29220646	Molecular Cell	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq	GSE106678
5771	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Pdgfra	Oligodendroglial precursors	NA	Cortices	29220646	Molecular Cell	Dissecting Cell-Type Composition and Activity-Dependent Transcriptional State in Mammalian Brains by Massively Parallel Single-Nucleus RNA-Seq	NA
5772	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Dcn, Lum, Gsn"	Mesenchymal cells	Tissue	Descending aorta	31141696	Cell Rep	Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells	NA
5773	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Sox17, Cd36, Fabp4, Cldn5"	Vascular endothelial cells	Tissue	Descending aorta	31141696	Cell Rep	Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells	NA
5774	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Satellite cells	"Pax7, Pax3, Myod1, Myf5"	Satellite cells	Tissue	Diaphragm	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5775	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3d	T cells	Tissue	Diaphragm	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5776	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Diaphragm	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5777	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Diaphragm	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5778	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Pdgfra	Fibro-adipogenic progenitors	Tissue	Diaphragm	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5779	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Fcer1g, C1qa"	Macrophages	Tissue	Diaphragm	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
5780	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bone	"Bglap, Ibsp, Spp1"	Bone	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5781	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Myh11, Rgs5, Mylk, Pdgfrb"	Pericyte cells	Tissue	Digit tip	31902657	Dev Cell	Acquisition of a Unique Mesenchymal Precursor-like Blastema State Underlies Successful Adult Mammalian Digit Tip Regeneration	GSE135985
5782	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, C1qa, Lyz2"	Macrophages	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5783	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Tie1, Cdh5"	Endothelial cells	Tissue	Digit tip	31902657	Dev Cell	Acquisition of a Unique Mesenchymal Precursor-like Blastema State Underlies Successful Adult Mammalian Digit Tip Regeneration	GSE135985
5784	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt5, Krt14, Krt10"	Epithelial cells	Tissue	Digit tip	31902657	Dev Cell	Acquisition of a Unique Mesenchymal Precursor-like Blastema State Underlies Successful Adult Mammalian Digit Tip Regeneration	GSE135985
5785	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Aif1, Tnfrsf11a, Tnfrsf13b"	Immune cells	Tissue	Digit tip	31902657	Dev Cell	Acquisition of a Unique Mesenchymal Precursor-like Blastema State Underlies Successful Adult Mammalian Digit Tip Regeneration	GSE135985
5786	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Pdgfra, Pdgfrb, Prrx2"	Mesenchymal cells	Tissue	Digit tip	31902657	Dev Cell	Acquisition of a Unique Mesenchymal Precursor-like Blastema State Underlies Successful Adult Mammalian Digit Tip Regeneration	GSE135985
5787	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cd93, Egfl7"	Endothelial cells	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5788	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt14, Krt42, Perp"	Epithelial cells	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5789	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Prrx1, Msx1, Vim"	Fibroblasts	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5790	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Lyz2, Cd14, Cd86"	Monocytes	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5791	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Rgs5, Notch3, Myh11"	Vascular smooth muscle cells	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5792	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Sox10, Sox2, Plp1"	Schwann cells	Tissue	Digit tip	31902657	Dev Cell	Acquisition of a Unique Mesenchymal Precursor-like Blastema State Underlies Successful Adult Mammalian Digit Tip Regeneration	GSE135985
5793	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Plp1, Mbp, Scn7a"	Schwann cells	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5794	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Icos, Trdc"	T cells	Tissue	Digit tip	32097654	Dev Cell	Cellular Heterogeneity and Lineage Restriction during Mouse Digit Tip Regeneration at Single-Cell Resolution	GSE143888
5795	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Olfm4, Gkn3, Igfbp4"	Stem-like cells	Tissue	Duodenum	32350281	Nat Commun	Astrovirus infects actively secreting goblet cells and alters the gut mucus barrier	PRJNA573959
5796	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Creb3l3, Ace2, Slc2a2"	Enterocytes	Tissue	Duodenum	32350281	Nat Commun	Astrovirus infects actively secreting goblet cells and alters the gut mucus barrier	PRJNA573959
5797	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Chga, Tph1, Gcg, Ghrl, Reg4, Amigo2, Etv1, Gip, Pkib, Sst, Iapp, Sphkap, Asic5, Hhex"	Enteroendocrine cells	Tissue	Duodenum	32350281	Nat Commun	Astrovirus infects actively secreting goblet cells and alters the gut mucus barrier	PRJNA573959
5798	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Clca1, Muc2, Tff3, Ano7"	Goblet cells	Tissue	Duodenum	32350281	Nat Commun	Astrovirus infects actively secreting goblet cells and alters the gut mucus barrier	PRJNA573959
5799	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	"Alox5ap, Lrmp, Dclk1"	Tuft cells	Tissue	Duodenum	32350281	Nat Commun	Astrovirus infects actively secreting goblet cells and alters the gut mucus barrier	PRJNA573959
5800	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epidermis	"Krt17, Krt14"	Epidermis	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5801	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sesc	"Coch, Otol1"	Sesc	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5802	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Top2a, Plp1, 2810417H13Rik, Cfd, Gfap"	Glial cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5803	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hair cells	"TMC1, Myo7a, Pvalb, Otof, Ush1C, Espn, Cabp2, Kcna10"	Hair cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5804	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Adipoq, Pgf, Ptx3"	Adipocytes	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5805	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cldn3, Hoxa10, Mt4, Cldn10, Epcam, Cldn9"	Epithelial cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5806	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Clcx1, Twist2, Spp1, Sfrp2, Car9"	Mesenchymal cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5807	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Tnnc1, Myf5, Gm7325, Myog"	Muscle cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5808	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tubb3, Nm1, Rtn1, Ngfr"	Neurons	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5809	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Slc6a13, Slc7a11, Gfap"	Neurons_glia cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5810	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Olig1	Oligodendrocytes	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5811	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Pou5f1	Stem cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5812	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Clec3b, Pgf, Snhg6, Mfap5, Vtn, Cilp, Mmp11"	Stromal cells	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5813	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Keratinocytes	Cxcl13	Keratinocytes	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5814	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Hes5	Neural precursors	Organoids	Ear	31204303	Stem Cell Reports	Defective Tmprss3-Associated Hair Cell Degeneration in Inner Ear Organoids	GSE130649
5815	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Krt19, Epcam, Krt5, Krt14"	Basal epithelial cells	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5816	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Krt19, Epcam, Spag6l, Hydin"	Ciliated epithelial cells	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5817	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Krt19, Epcam, Muc1, Lyz"	Secretory epithelial cells	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5818	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ptprcap, Cd3d"	T-cell	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5819	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ptprcap, Cd79a"	B-cell	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5820	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Ptprcap, Areg"	Type 2 lymphoid cells	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5821	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Macrophages	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5822	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Adgre1, C1qa"	M2 Macrophages	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5823	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Itgax	Dendritic cells	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5824	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Klrk1	Cytotoxic phenotype monocytes	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5825	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col1a2, Egfl7, Flt4"	Vascular Endothelial cellss	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5826	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col1a3, Egfl7, Flt1"	Lymphatic Endothelial cellss	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5827	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col1a4, Rgs5"	Pericytes	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5828	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col1a5, Mlana"	Melanocytes	Tissue	Ear	32351546	Front Genet	Single-Cell Transcriptomes Reveal a Complex Cellular Landscapein the Middle Ear and Differential Capacities for Acute Responseto Infection	GSE146244
5829	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Na_ve pluripotent cells	"1110008L16Rik, 1810037I17Rik, 2810008D09Rik, Akap12, Akr1b3, Alg13, Alpl, Apoc1, Apoe, Arid5b, Ash2l, Asns, Atox1, Atp5g1, AU018091, Avpi1, Bax, Baz2a, BC033916, Bcat1, Bex1, Bpnt1, Calcoco2, Cbr3, Cbx7, Cd9, Cebpzos, Chchd10, Cisd1, Ckb, Cldn4, Col18a1, Cox4i1, Csrp2, Ctbp2, Dbi, Dhx16, Dna"	Na_ve pluripotent cells	Tissue	Embryoid body	31740535	Development	Single cell transcriptome dynamics from pluripotency to FLK1+_esoderm	GSE130146
5830	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"1500012F01Rik, 2410006H16Rik, 2610524H06Rik, Acadl, Acer2, Acot1, Acot13, Akr7a5, Aldh2, Aldh5a1, Alox15, Apoe, Aspscr1, Avpi1, Bbx, Bckdha, Bst2, Btf3l4, Capg, Ccno, Ccpg1os, Cdc42ep5, Cdk2ap2, Cdkn1c, Cdx2, Cenpw, Cir1, Cldn7, Cmas, Cnot11, Col18a1, Coro1b, Cox7a2, Cpm, Crip1, Crot, Ctps2"	Primordial germ cells	Tissue	Embryoid body	31740535	Development	Single cell transcriptome dynamics from pluripotency to FLK1+_esoderm	GSE130146
5831	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	"Abracl, Acta1, Acta2, Actb, Actc1, Actg1, Anxa3, Arl4c, Arpc5, Bambi, Bex1, Bmp4, Cabp1, Car2, Cd9, Cdc42ep5, Cdkn1a, Cdkn1c, Cited2, Clic1, Cnih4, Cnn1, Cnn2, Cnn3, Crip2, Csrp1, Cst3, Cyb5a, Cyr61, Dstn, Eno3, Gata3, Glipr2, Gng2, Gpx7, Hes1, Hspb1, Id1, Id3, Ier5, Ifitm3, Isl1, Krt18, Krt19, Krt"	Cardiac cells	Tissue	Embryoid body	31740535	Development	Single cell transcriptome dynamics from pluripotency to FLK1+_esoderm	GSE130146
5832	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"2410006H16Rik, Aes, Aldoa, Amot, Anxa2, Anxa4, Apoe, Blvrb, Bnip3, Bnip3l, Bsg, Car4, Cd24a, Cdh1, Cer1, Cers4, Cfc1, Chchd10, Cited1, Cldn6, Cldn7, Clic6, Col9a3, Commd7, Cotl1, Crb3, Crip1, Ctsz, Cyba, Cystm1, Dapk2, Ddah2, Ddit4, Dgkk, Dkk1, Dnmt3b, Dpysl3, Dusp4, Eef2, Ehd1, Elf3, Emb, Epcam"	Endoderm cells	Tissue	Embryoid body	31740535	Development	Single cell transcriptome dynamics from pluripotency to FLK1+_esoderm	GSE130146
5833	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"AA465934, Ablim1, Amot, Aplnr, Apoe, Aprt, Arpc1b, Atp2b1, Bambi, Calm2, Car4, Cbfa2t3, Ccnd1, Cd59a, Cd9, Cited2, Clic1, Col18a1, Col4a2, Creg1, Crip2, Ctsh, Ddah2, Dusp2, Ebf1, Ecscr, Egfl7, Ets1, Etv2, Exoc3l, F2r, Fam212a, Fgf3, Fli1, Fn1, Fth1, Gadd45g, Gata2, Gchfr, Gngt2, Herc1, Hhex, Id3"	Hematopoietic cells	Tissue	Embryoid body	31740535	Development	Single cell transcriptome dynamics from pluripotency to FLK1+_esoderm	GSE130146
5834	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"9-Sep, 6330403K07Rik, 6330419J24Rik, Abracl, Acta2, Actb, Actc1, Actg1, Ahnak, Akap12, Amot, Anxa2, Appbp2, Aprt, Arhgdia, Arl2bp, Arl4c, Arpc5, Asb4, Atg3, Bambi, Basp1, BC023829, Bmp4, C430049B03Rik, C530008M17Rik, Cald1, Calm2, Cap1, Capn2, Capn6, Car4, Ccnd1, Ccnd2, Cd24a, Cdc42ep5, Cdk"	Smooth muscle cells	Tissue	Embryoid body	31740535	Development	Single cell transcriptome dynamics from pluripotency to FLK1+_esoderm	GSE130146
5835	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cxcl12 co-expressed	"Il1r1, Col3a1, Col5a2, Igfbp5, Sned1, Ifi203, Nenf, Pfkfb3, 1110008P14Rik, Lcn2, Serping1, Ube2l6, Fibin, B2m, Eid1, Fgf7, Cpxm1, Ism1, Cst3, Lbp, Wisp2, Zbp1, Srpx, Il13ra1, Apln, Hs6st2, Bgn, Slc16a2, Capn6, Gpm6b, Cp, Dclk1, Mme, Ptx3, Tbx15, Slc16a1"	Cxcl12 co-expressed	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5836	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ecm.rearrangement	"Sulf1, Col19a1, Col3a1, Col5a2, Fn1, Ihh, Col4a4, Col4a3, Serpinb5, Fmod, Elf3, Lamc1, Tnr, Dpt, Ddr2, Olfml2b, Tgfb2, Itga8, Adamtsl2, Col5a1, Pomt1, Eng, Lmx1b, Gsn, Olfml2a, Creb3l1, Hsd17b12, Wt1, Grem1, Spint1, Cst3, Fkbp1a, Mmp9, Sulf2, Atp7a, Nox1"	Ecm.rearrangement	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5837	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Embryonic mesenchyme	"Matn4, Matn1, Col9a1, Col9a3, Cnmd, Asb4, Col9a2, Wwp2, Sox9, Col2a1, Nnat, Hapln1, Cytl1, Cd24a, Mest, Mia, Bex2, Mpz, Cdkn1c, Papss2, Stmn1, Ldha, Plod2, Cdk4, Slc26a2, Bex3, Epyc, Pdia6, Ss18l2, S100b, Crabp1, Fibin, Siva1, Gpc3, Cthrc1, Tpi1, Hnrnpd"	Embryonic mesenchyme	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5838	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Er.stress	"Nck2, Ankzf1, Dnajb2, Rhbdd1, Bcl2, Ubxn4, Yod1, Ppp1r15b, Fam129a, Edem3, Atf6, Ufc1, Atf3, Man1b1, Tor1a, Hspa5, Dab2ip, Nfe2l2, Dnajc10, Psmc3, Creb3l1, Thbs1, Eif2ak4, Chac1, Pdia3, Bcl2l11, Ddrgk1, Tmx4, Trib3, H13, Edem2, Cebpb, Ptpn1, Vapb, Srpx, A"	Er.stress	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5839	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ifitm1 co-expressed	"1500015O10Rik, Crocc2, Sned1, Fmod, Serping1, Cst3, Ptgis, Slc16a2, Fabp5, Cp, Gper1, Gng11, Cemip, Adm, Ifitm2, Ifitm1, H19, Akap12, Gja1, 1500009L16Rik, Scara5, Zic5, Mmp13, Clmp, Ctsh, Zic1, Zic4, Ebf1, Sfrp4, Tgfbi, Hif1a, Aspg, Fbln1, Kng2, Apod, Abi"	Ifitm1 co-expressed	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5840	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Long-term mefs	"Rps3a3, Timp1, Bex1, Rhox5, Gm15459, S100a6, Gm10320, Gsto1, Gm11942, S100a4, Gm10260, Mif, Esd, Gm15772, Anxa1, Ctgf, Rps27l, Pkm, Bex3, Txn1, Tagln2, Tnfrsf12a, Ldha, Selenoh, Serpinb2, Gm28438, Tex19.1, Gm10263, Tubb5, Birc5, Ran, Anxa2, Gsta4, Nme1, T"	Long-term mefs	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5841	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Matn4 co-expressed	"Spats2l, Igfbp5, Kcns1, Matn4, Penk, Mfap2, Eln, Cpxm2, Pdgfrl, Igfbp3, Mfap4, Igfbp4, Nov"	Matn4 co-expressed	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5842	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mef.identity	"Gm5571, Rbfox2, Btbd19, Actn1, Gatad2a, Med6, Mex3a, Ccdc80, Mex3c, Sdpr, Pcdhb2, Trim16, Obsl1, Epha1, Stx1b, Stau1, Serpine1, Aa881470, Col12a1, 2010300f17rik, Ccdc102a, Nradd, Pard6g, Ntn4, 5730471h19rik, Sepn1, Peg12, Dpysl3, 1110012d08rik, Akt1, Zfp2"	Mef.identity	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5843	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pluripotency cells	"Gm5Rhox5, Tdgf1, Utf1, Mkrn1, Dppa5a, Upp1, Chchd10, Klf2, Trap1a, Mylpf, 1700013H16Rik, AA467197, Dhx16, Mt2, Ube2a, Khdc3, Pycard, Hsp90aa1, Prrc1, Hat1, Calcoco2, Impa2, Saa3, Ooep, Bnip3, Mt1, Asns, Aldoa, Tdh, Gjb3, Rbpms2, Prps1, Fam25c, Eif2s2, Cen"	Pluripotency cells	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5844	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	"Mcm4, Smc4, Gtse1, Ttk, Rangap1, Ccnb2, Cenpa, Cenpe, Cdca8, Ckap2, Rad51, Pcna, Ube2c, Lbr, Cenpf, Birc5, Dtl, Dscc1, Cbx5, Usp1, Hmmr, Wdr76, Ung, Hn1, Cks2, Kif20b, Cdk1, Slbp, Aurkb, Kif11, Cks1b, Blm, Msh2, Gas2l3, Tyms, Hjurp, Hells, Prim1, Uhrf1, N"	Proliferation	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5845	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Senescence	"Il6, Il7, Il1a, Il1b, Il13, Il15, Cxcl15, Cxcl1, Cxcl2, Cxcl3, Ccl8, Ccl13, Ccl3, Ccl20, Ccl16, Ccl26, Csf2, Mif, Areg, Ereg, Nrg1, Egf, Fgf2, Hgf, Fgf7, Vegfa, Ang, Kitl, Cxcl12, Pigf, Igfbp2, Igfbp3, Igfbp4, Igfbp6, Igfbp7, Mmp1, Mmp3, Mmp10, Mmp12, Mmp"	Senescence	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5846	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Giant cells	"Car2, Sct, 1500009L16Rik, Serpinb9e, Prl2a1, S100a6, Plac8, Serpinb9g, Prl6a1, Lgals9, Prl7b1, Ada, Aldh1a3, Serpinb6b, Sri, Fstl3, Serpinb9d, Prl2c5, H19, Aprt, Serpinb9c, Ascl2, Plac1, Mt2, Fthl17a, Trp53i11, Mrfap1, Phactr1, Tnfrsf9, Lgals1, Pitrm1, Nc"	Spiral artery trophpblast giant cells	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5847	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spongiotrophoblasts	"Phlda2, Dio3, Dkkl1, Hspb1, Tmem14c, Cidea, Tfrc, Batf3, Sin3b, Prss8, Ldoc1, Maoa, Cdkn1c, Las1l, Rhox6, Tex19.1, 2610528J11Rik, Gkap1, Cldn7, Slc22a18, Rhox9, Mrps6, Serpinb9g, Aqp3, mt-Cytb, Hsp25-ps1, Rdh12, Krt18, Pfdn1, Tulp1, Selenoh, Dynll2, Glrx5"	Spongiotrophoblasts	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5848	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Trophoblast.identity	"Sct, Rhox9, Rhox6, Ldoc1, Sin3b, Fthl17a, Cdkn1c, Gm9112, Rhox5, 3830417A13Rik, Plac1, Serpinb9g, Serpinb9e, Tbrg1, Mbnl3, Trap1a, Hspb1, Dusp9, Nup62cl, Phlda2, Krt8, Tex19.1, H19, Serpinb9b, Lgals1, Krt19, Rps4l, Hmgn5, Gm9, Gjb5, Epop, Lgals9, Gjb3, Sl"	Trophoblast.identity	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5849	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Two c (2c)	"BB287469, Zscan4f, Gm5662, Gm9125, Gm2016, Obox3, Gm11544, Gm428, Gm4850, Dub1a, Cdkn2d, Usp17l5, Gm2022, Gm1995, Gm4303|Gm4305|Gm4307, H47, Omt2b, Zscan5b, Gm11756, Gm13078, Gm10696, Omt2a, Gm8300, Gm4971, Gm11487, 1600025M17Rik, Gm5039, Ube2d2, Zfp707"	Two c (2c)	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5850	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Xen	"Dab2, Fst, Pdgfra, Pth1r, Gata6, Foxq1, Fxyd3, Tet3, Sox17, Foxa2, Lama1, Lamb1, Gata4, Krt8"	Xen	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5851	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Apoptotic cells	"Ercc5, Serpinb5, Inhbb, Steap3, Btg2, Phlda3, Tnni1, Rgs16, Ier5, Slc19a2, Adck3, Ephx1, Ptpn14, Atf3, Notch1, Rxra, Ralgds, Ak1, Stom, Ddb2, Cd82, Il1a, Pcna, Bmp2, Trib3, Procr, Blcap, Ada, Fgf13, Irak1, Tspyl2, Sat1, Zmat3, Hspa4l, Slc7a11, Tm4sf1, Rap"	Apoptotic cells	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5852	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Gja1, Gjb6, Cldn10, F3, Slc1a3, Slc39a12, Sdc4, Acsbg1, Mfge8, Ntsr2, Lcat, Cml5, Aqp4, Pla2g7, Ppap2b, Ppp1r3c, S1pr1, Slc25a18, Plcd4, Chrdl1, Fam107a, Dio2, Gpr37l1, Mt2, Entpd2, Gstm1, Cbs, Tst, Prodh, Slco1c1, Gfap, Tlcd1, Mlc1, Apoe, C030018K13Rik"	Astrocytes	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5853	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nos1, Fam84a, Unc5d, Rnd2, Pou3f2, Pdzrn3, Hs3st1, Sstr2, Pcp4, Meis2, Lrrc16b, Plekhf2, Sorl1, Ppp2r2b, Trim9, Pou3f1, Frmd4b, Mllt3, Plcb1, Ppp2r1b, Lsamp, Enc1, Robo2, Scrt2, Cdh4, Slc17a6, Osbpl6, Sema3c, Kif21b, Wnt7b, Tbr1, Chga, Tenm4, Lmo1, Tsc22d"	Cortical neurons	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5854	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vtn, Ednrb, Sox21, Zeb2, Hes5, Fabp7, Sox1, Neurod1, Pax3, Pax6, Cdh2, Sox9, Sox2, Id2, Hoxb1, Msx1, Msi1, Msi2, Atoh1, Rbfox3, Map2, Tubb3"	Aeural cells	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5855	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Spp1, Ccnb1, Pdgfra, Dcn, Rlbp1, Slc6a13, Inmt, Pnlip, Lum, Cmbl, Pcolce, Postn, Apod, Ednrb, Scrg1, Tmem45a, Fam70b, Cspg4, Cacng4, Fabp7, Pbk, 1110015O18Rik, Emid1, Serping1, Olig1, Vtn, Prc1, Fam180a, E130306D19Rik, Bgn, Lmcd1, Col1a2, Spc25, Calcrl, I"	Oligodendrocyte precursors	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5856	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cdh1, Tgm1, Cldn3, Cldn4, Cldn7, Cldn11, Ocln, Epcam, Crb3, Krt8, Krt19, Pkp3, Dsp, Pkp1"	Epithelial.identity	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5857	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Gdf10, Id3, Tesc, Thrsp, Tnfrsf19, Frzb, Id1, Sdpr, Emid1, E330013P04Rik, Hspb8, Pdlim3, Dcn, Gfap, X1500015O10Rik, Mt2, Lef1, Rmst, Gas1, Tst, Mgll, Zic5, Sp5, Hopx, Prex2, Eya1, X0610040J01Rik, Cav1, Mt1, Adamts19, Wnt8b, Nme7, Crip1, Zfp36l1, Cyp1b1, L"	Radial glia cells	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5858	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Id3, Id1, Foxj1, Mt1, Mt2, Pla2g7, Hes5, Hes1, Mia, Egr1, Metrn, Fos, Tmem47, Ednrb, Tppp3, Clu, Serpine2, Riiad1, Gfap, Sparcl1, Apoe, Slc1a3, Nlrx1, Selm, Ttyh1, Gstm1, Lxn, Cyr61, Fbxo2, Mlc1, Enkur, Mlf1, Mgst1, Slc9a3r1, Bcan, Fabp7, Dbi, Emp2, Ppp1r"	Radial glia cells	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5859	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Neurog2, Eomes, Gadd45g, Rhbdl3, Ptgds, Btbd17, Snhg18, Lima1, Tfap2c, Mfng, Btg2, Myo10, Csrp1, Tead2, Pax6, Celsr1, Gm29260, Chd7, Acads, Heg1, Dll1, Gamt, Kcne1l, Tox3, Rcn1, Gfap, Igfbp5, Hes6, Efhd2, Inppl1, Lrrn3, Sfrp1, Nme4, Sox21, Loxl1, Fam210b"	Radial glia cells	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5860	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Rhox6, Rhox9, 3830417A13Rik, Gjb3, Gm9112, Hspb1, Nup62cl, Ldoc1, Hspe1, Rhox12, Tex19.1, Gjb5, Sin3b, 1700086L19Rik, Ldhb, Krt19, Hmgn5, Trap1a, Plac1, Cdkn1c, Bex1, Fthl17a, Dbi, Ube2a, Dnaja1, Phactr1, Phlda2, Hand1, Selenoh, Rhox5, Atp5g1, Hmgn1, Hat1"	Trophoblast progenitors	Cell line	Embryonic fibroblasts	30712874	Cell	Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming	GSE122662
5861	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Embryonic/fetal myoblasts	"Acta2, Tagln"	Embryonic/fetal myoblasts	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131734
5862	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epiblast	Fgf5	Epiblast	Cell line	Embryonic stem cells	32795399	Cell Stem Cell	Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation	GSE114952
5863	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesoderm	"mesoderm factors T , Eomes"	Mesoderm	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131738
5864	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pluripotency cells	"Zfp42, Nanog, Pou5f1"	Pluripotency cells	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131737
5865	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Sox2, Pax3"	Ectoderm cells	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131740
5866	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Col1a1, Col1a2, Col3a1, Acta2, Tagln"	Mesenchymal cells	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131735
5867	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Col1a1, Col1a2, Col3a1"	Mesenchymal cells	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131736
5868	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"mesoderm factors T , Eomes, Foxa2, Gsc"	Mesendodermal	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131739
5869	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Vimentin	Neural progenitors	Cell line	Embryonic stem cells	29313530	Cell Res	Histone H3 lysine 4 monomethylation modulates long-range chromatin interactions at enhancers	GSE74055
5870	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	SOX1	Neuroectoderm cells	Cell line	Embryonic stem cells	32795399	Cell Stem Cell	Naive Pluripotent Stem Cells Exhibit Phenotypic Variability that Is Driven by Genetic Variation	GSE114952
5871	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Myod1, Myog, Tnni1"	Skeletal myogenic progenitors	Cell line	Embryonic stem cells	31590918	Biochem Biophys Res Commun	Single-cell RNA-seq analysis of Mesp1-induced skeletal myogenic development.	GSE131734
5872	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Caudal epiblast	Nkx1-2	Caudal epiblast	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5873	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Caudal mesoderm	"Cdx2, Cdx1"	Caudal mesoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5874	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ecto	"Sox2, Otx2, Pax6, Ptn, Hes3"	Ecto	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5875	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eecto	"Tfap2c, Gata2, Elf5"	Eecto	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5876	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eendo	"Afp, Spink1, Apoa4, Hnf4a"	Eendo	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5877	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Emeso	"Foxf1, Bmp4, Plagl1"	Emeso	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5878	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epiblast	"Dnmt3b, Utf1"	Epiblast	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5879	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gut	Apela	Gut	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5880	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ice_epi	"Gapth, Ppia, pou5f1"	Ice_epi	Cell line	Embryos	31626770	Cell	Generation of Blastocyst-like Structures from Mouse Embryonic and Adult Cell Cultures	GSE135701
5881	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intermediate	"Gapth, Ppia, Pou5f1, T"	Intermediate	Cell line	Embryos	31626770	Cell	Generation of Blastocyst-like Structures from Mouse Embryonic and Adult Cell Cultures	GSE135701
5882	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymph	"Lyve1, Prox1"	Lymph	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5883	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymph	"Lyve1, Prox1"	Lymph	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5884	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchyme	"Bmp4, Ahnak, Pmp22"	Mesenchyme	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5885	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Meso	"Hoxb1, T, Cdx1, Meox1, Hand1, Twist1, Twist2"	Meso	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5886	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mixed mesoderm	Osr1	Mixed mesoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5887	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nascent mesoderm	"Mesp1, Lefty2, Mesp2"	Nascent mesoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5888	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nmp	"Hes3, Epha5, Cdx4, Hoxb9"	Nmp	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5889	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Notochord cells	"Foxa2, Chrd, Noto"	Notochord cells	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5890	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paraxial mesoderm	"Tbx1, Meox1, Tcf15"	Paraxial mesoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5891	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pe	"Gapth, Ppia, Dab2, Krt8, Krt18"	Pe	Cell line	Embryos	31626770	Cell	Generation of Blastocyst-like Structures from Mouse Embryonic and Adult Cell Cultures	GSE135701
5892	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pgc	"Ifitm3, Dnd1, Dppa3"	Pgc	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5893	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pluripotency cells	"Sox2, Nodal, Nanog"	Pluripotent epiblast (epi)	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5894	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Primitive streak	"Nanog, Eomes"	Primitive streak	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5895	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Dppa3, Pou5f1, Klf5"	Primordial germ cells	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5896	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	Dppa3	Primordial germ cells	Tissue	Embryos	32728215	Nature	Epigenetic regulator function through Mouse gastrulation	GSE137337
5897	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Somitic mesoderm	"Aldh1a2, Dll1, Tbx6"	Somitic mesoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5898	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Te	"Gapth, Ppia"	Te	Cell line	Embryos	31626770	Cell	Generation of Blastocyst-like Structures from Mouse Embryonic and Adult Cell Cultures	GSE135701
5899	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Anterior primitive streak cells	"Otx2, Miixl1, Gsc, Lhx1, Pax7"	Anterior primitive streak cells	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5900	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Anterior visceral endoderm	"Cer1, Dkk1, Hhex, Lefty1"	Anterior visceral endoderm	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5901	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Blood cells	"Gata1, Klf1"	Blood cells	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5902	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Smarcd3, Acta2, Tagin, Myl7, Nkx2-5, Myl4, Tnnt2"	Cardiomyocytes	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5903	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	Cer1	Definitive endoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5904	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Allantois	"Hoxa11, Hoxa2, Tbx4"	Allantois	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5905	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Anxa5, Pccam1, Cdh5"	Endothelial cells	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5906	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Ebf1, Mgp, Lhfp"	OE.1	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5907	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Rprm, Pcdh19, Ctxn3"	OE.2	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5908	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Fgf17, Mecom, Clu"	Anterior medial NaP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5909	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Barx1, Gm12446, Dmrt2"	Palate	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5910	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Shh, Fgf8, Lmo2"	Dental	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5911	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Col9a1, Adamts9, ltga4"	Fusion zone	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5912	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Gjb6, Barx2, Gap43"	NL groove	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5913	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Wnt9b, Wnt3, Lmo1"	Surface.1	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5914	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Robo2, Wnt3, Pcp4, Pcp1"	Surface.2	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5915	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Gabrp, Rhov, Lypd3"	Periderm	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5916	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Runx1t1, Tnfaip2, Snai1"	Ect & mes	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5917	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Ebf1, Mgp, Lhfp"	OE.1	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5918	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Rprm, Pcdh19, Ctxn3"	OE.2	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5919	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Fgf17, Mecom, Clu"	Anterior medial NaP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5920	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Barx1, Gm12446, Dmrt2"	Palate	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5921	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Shh, Fgf8, Lmo2"	Dental	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5922	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Col9a1, Adamts9, ltga4"	Fusion zone	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5923	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Gjb6, Barx2, Gap43"	NL groove	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5924	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Wnt9b, Wnt3, Lmo1"	Surface.1	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5925	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Robo2, Wnt3, Pcp4, Pcp1"	Surface.2	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5926	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Gabrp, Rhov, Lypd3"	Periderm	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5927	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Epcam, Igfbp5, Pdgfa, Sfn, Spint2, Cre, LacZ, Runx1t1, Tnfaip2, Snai1"	Ect & mes	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5928	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	Krt14	Ectoderm cells	Tissue	Embryos	32427842	Nat Commun	HOX13-dependent chromatin accessibility underlies the transition towards the digit development program	"GSE123482, GSE145657"
5929	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Lhx1, Lefty1"	Embryonic visceral endoderm	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5930	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Elf5, Ascl2, Tfap2c"	Exe ectoderm cells	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5931	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Tfap2c, Ttr"	Endoderm cells	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5932	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Apln, Msx1"	Extra-embryonic visceral endoderm (exve)	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5933	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Foxa2, Sox17"	Endothelial cells	Tissue	Embryos	31086336	Nature	Molecular recording of mammalian embryogenesis	GSE117542
5934	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Cdh5, Hapln1"	Endothelial cells	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5935	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Cdh5, Hapln1"	Endothelial cells	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5936	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Hemgn, Alas2, Alad, Hbq1b, Hba-x, Hbb-y"	Erythrocytes	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5937	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Hemgn, Alas2, Alad, Hbq1b, Hba-x, Hbb-y"	Erythrocytes	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5938	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"Vwf, Ppbp, Pf4"	Megakaryocytes	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5939	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"Vwf, Ppbp, Pf4"	Megakaryocytes	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5940	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Rnf128, Calb2, Gm9866"	Anterior and medial LNP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5941	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Gsc, Pitx2, Osr1"	Posterior and medial LNP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5942	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Col9a1, Sox9, Flrt2"	Chondroprogenitors	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5943	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Cxxc4, Rerg, Tgfb2"	Cells adjacent to fusing Ect	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5944	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Hey2, Emx2, Irx3, Irx5, Lef1"	Cells adjacent to surface Ect	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5945	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Cxcl14, Lhx8, Dlx5"	Anterior and medial MxP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5946	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Shox2, Lhx6, Asb4"	Palatal shelf	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5947	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Sox10, Foxd3, Fabp7, Plp1"	Schwann cell progenitors	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5948	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Rnf128, Calb2, Gm9866"	Anterior and medial LNP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5949	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Gsc, Pitx2, Osr1"	Posterior and medial LNP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5950	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Col9a1, Sox9, Flrt2"	Chondroprogenitors	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5951	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Cxxc4, Rerg, Tgfb2"	Cells adjacent to fusing Ect	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5952	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Hey2, Emx2, Irx3, Irx5, Lef1"	Cells adjacent to surface Ect	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5953	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Cxcl14, Lhx8, Dlx5"	Anterior and medial MxP	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5954	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Shox2, Lhx6, Asb4"	Palatal shelf	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5955	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Alx1, Twist1, Msx1, Prrx2, Sox10, Foxd3, Fabp7, Plp1"	Schwann cell progenitors	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5956	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Fcgr1, Fcgr3, Fcgr4, Cd200r1, Itgam, Csf1r, Trem2"	Monocytes/macrophages	Tissue	Embryos	31118233	Development	The molecular anatomy of mammalian upper lip and primary palate fusion at single cell resolution	GSE132462
5957	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Etv2	Haematoendothelial progenitors	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5958	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Ebf1	B cells	Tissue	Embryos	31221665	Genes Dev	Liver Immune Profiling Reveals Pathogenesis and Therapeutics for Biliary Atresia	NA
5959	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Serping1, Ptn, Cxcl14, Des, A2m"	Decidual stromal cells	Tissue	Embryos	31513564	PLOS Biology	Adult bone marrow progenitors become decidual cells and contribute to embryo implantation and pregnancy	GSE104842
5960	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5, Egfl7, Flt1"	Endothelial cells	Tissue	Embryos	31513564	PLOS Biology	Adult bone marrow progenitors become decidual cells and contribute to embryo implantation and pregnancy	GSE104842
5961	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col6a1, Col6a2, Col3a1, Col1a2, Col1a1"	Fibroblasts	Tissue	Embryos	31513564	PLOS Biology	Adult bone marrow progenitors become decidual cells and contribute to embryo implantation and pregnancy	GSE104842
5962	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Ccl9, Ccl4, Cd68, Ly86, Fcgr3, Fcgr1, Cd14, Coro1a, Arhgdib"	Immune cells	Tissue	Embryos	31513564	PLOS Biology	Adult bone marrow progenitors become decidual cells and contribute to embryo implantation and pregnancy	GSE104842
5963	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Aif1"	Macrophages	Tissue	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5964	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Aif1"	Macrophages	NA	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5965	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"C1qa, C1qb, C1qc"	Macrophages	Tissue	Embryos	32427842	Nat Commun	HOX13-dependent chromatin accessibility underlies the transition towards the digit development program	"GSE123482, GSE145657"
5966	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5"	Endothelial cells	Tissue	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5967	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5"	Endothelial cells	NA	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5968	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Alas2, HbA2"	Erythrocytes	Tissue	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5969	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Alas2, HbA2"	Erythrocytes	NA	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5970	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ccr2, Ly6c2"	Monocytes	Tissue	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5971	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ccr2, Ly6c2"	Monocytes	NA	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5972	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"En1, Pax2"	Neural crest cells	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5973	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ngp, Ly6g"	Neutrophils	Tissue	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5974	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ngp, Ly6g"	Neutrophils	NA	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5975	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Dcstamp, Ocstamp, Atp6v0d2, Ctsk, Mmp9"	Osteoblasts	Tissue	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5976	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Dcstamp, Ocstamp, Atp6v0d2, Ctsk, Mmp9"	Osteoblasts	NA	Embryos	31907410	Nat Cell Biol	Erythromyeloid progenitors give rise to a population of osteoclasts that contribute to bone homeostasis and repair	GSE125088
5977	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Lamb1, Plat, Sparc"	Parietal endoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5978	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Lamb1, Plat, Sparc, Bmp2, Pdgfra"	Parietal endoderm	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5979	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Isl1, Tcf21"	Pharyngeal endoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5980	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Plvap	Endothelial cells	Tissue	Embryos	32427842	Nat Commun	HOX13-dependent chromatin accessibility underlies the transition towards the digit development program	"GSE123482, GSE145657"
5981	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Gypa	Erythrocytes	Tissue	Embryos	32427842	Nat Commun	HOX13-dependent chromatin accessibility underlies the transition towards the digit development program	"GSE123482, GSE145657"
5982	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Tbx5	Mesenchymal cells	Tissue	Embryos	32427842	Nat Commun	HOX13-dependent chromatin accessibility underlies the transition towards the digit development program	"GSE123482, GSE145657"
5983	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Myog	Muscle cells	Tissue	Embryos	32427842	Nat Commun	HOX13-dependent chromatin accessibility underlies the transition towards the digit development program	"GSE123482, GSE145657"
5984	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	Gata6	Primitive endoderm cells	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5985	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Irx3, Hesx1, Six3"	Rostral neurectoderm	Tissue	Embryos	30787436	Nature	A single-cell molecular map of Mouse gastrulation and early organogenesis	GSE87038
5986	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Hnf4a, Plau, Ttr, Lefty1, Hhex, Eomes, Foxa1, Otx2, Foxa2, Afp, Rhox5, Trap1a, Xlr3a, Cdkn2a, Nkx2-1"	Thyroid and thymus	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5987	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Hnf4a, Plau, Ttr, Lefty1, Hhex, Eomes, Foxa1, Otx2, Foxa2, Afp, Rhox5, Trap1a, Xlr3a, Cdkn2a, Irx1"	Lung endoderm cells	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5988	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Hnf4a, Plau, Ttr, Lefty1, Hhex, Eomes, Foxa1, Otx2, Foxa2, Afp, Rhox5, Trap1a, Xlr3a, Cdkn2a, Ppy"	Liver endoderm cells	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5989	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Hnf4a, Plau, Ttr, Lefty1, Hhex, Eomes, Foxa1, Otx2, Foxa2, Afp, Rhox5, Trap1a, Xlr3a, Cdkn2a, Pdx1"	Pancreas endoderm cells	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5990	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Hnf4a, Plau, Ttr, Lefty1, Hhex, Eomes, Foxa1, Otx2, Foxa2, Afp, Rhox5, Trap1a, Xlr3a, Cdkn2a, Fabp1"	Small intestine	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5991	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Hnf4a, Plau, Ttr, Lefty1, Hhex, Eomes, Foxa1, Otx2, Foxa2, Afp, Rhox5, Trap1a, Xlr3a, Cdkn2a, Hoxb9"	Posterior gut tube	Tissue	Embryos	30959515	Nature	The emergent landscape of the Mouse gut endoderm at single-cell resolution	GSE123046
5992	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesoderm	"Foxf1, Hand1"	Mesoderm	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
5993	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Notochord cells	"Nog, Lmx1a"	Notochord cells	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
5994	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paraxial mesoderm	"Msgn1, Fgf4"	Paraxial mesoderm	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
5995	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Dppa3, Pou5f1"	Primordial germ cells	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
5996	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Anterior endoderm cells	Sox2	Anterior endoderm cells	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
5997	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Tfap2a, Gjb3, Dlx5"	Ectoderm cells	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
5998	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Foxa1, Foxa2, Cxcr4"	Endoderm epithelial cells	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
5999	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Cdx1, Cdx2, Cdx4"	Posterior endoderm	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
6000	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Sox7, Icam2"	Endothelial cells	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
6001	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	EpCAM	Epithelial cells	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
6002	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Cubn, Apoc2"	Yolk sac endoderm	Tissue	Endoderm cells	33106598	Cell Res	Single-cell patterning and axis characterization in the murine and human definitive endoderm	"CRA003104, HRA000280"
6003	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Myc	Endothelial cells	Tissue	Endothelium	30075129	Cell Stem Cell	Endothelial Regeneration of Large Vessels Is a Biphasic Process Driven by Local Cells with Distinct Proliferative Capacities	"GSE115618, GSE116718"
6004	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Apoa1, Apoa4, Mttp, Sis"	Enterocytes	Tissue	Enteroid	31756561	Cell Mol Gastroenterol Hepatol	Enteroendocrine Progenitor Cell_Enriched miR-7 Regulates Intestinal Epithelial Proliferation in an Xiap-Dependent Manner	NA
6005	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	"Defa17, Defa3, Lyz1"	Paneth cells	Tissue	Enteroid	31756561	Cell Mol Gastroenterol Hepatol	Enteroendocrine Progenitor Cell_Enriched miR-7 Regulates Intestinal Epithelial Proliferation in an Xiap-Dependent Manner	NA
6006	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Cenpa, Lgr5"	Progenitor cells	Tissue	Enteroid	31756561	Cell Mol Gastroenterol Hepatol	Enteroendocrine Progenitor Cell_Enriched miR-7 Regulates Intestinal Epithelial Proliferation in an Xiap-Dependent Manner	NA
6007	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	E3.5 inner cell mass	"Bhmt, AC134841.1, Gm5096, Gm15622, Splc, AA467197, Trim43c, Calcoco2, Pramel6, Gm5612"	E3.5 inner cell mass	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6008	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	E6.5 primitive streak	"Aplnr, Mesp1, Mesp2, Pcdh8, Bmp7, Lmo1, Cdh11, Sp5, Foxc2, Lhfp"	E6.5 primitive streak	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6009	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epiblast stem cells	Fgf5	Epiblast stem cells	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6010	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesoderm	"Mixl1, Eomes"	Mesoderm	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6011	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pluripotent cells	"Zfp42, Nanog, Pou5f1, Esrrb, Dppa3, Tcf15, Cbx7"	Pluripotent cells	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6012	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epiblast cells	"Fgf5, Dnmt3b, Pou3f1"	Post-implantation epiblast cells	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6013	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epiblast cells	"H2-M5, Enox1, Ubd, 2410137M14Rik, Trem2, Gm9732, Gm8127, Notum, Sept1, Manba"	E4.5 epiblast	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6014	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Gm13270, Sox7, Tfec, 4930506M07Rik, Lama1, 9930013L23Rik, Htra1, Cyp4f14, Hnf1b, Fam198b"	E4.5 primitive endoderm	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6015	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epiblast cells	"Pla2g1b, Mt3, Hormad1, Alre, BC033916, Tdrd12, Tuba3a, Tmem54, Atox1, Tcea3"	E5.5 epiblast	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6016	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Rnase4, Ang, F5, Apob, Fgb, Gm10680, Apoa4, Tmprss2, AC153547.1, Cllc6"	E5.5-6.5 visceral endoderm	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6017	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epiblast cells	"Dpysl2, Nap1l1, Zic5, Npm1, Set, Ncl, Zic2, Pbx1, Rps25, Hnrnpa0"	E6.5 epiblast	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6018	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	PRC1	Embryonic stem cells	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6019	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Foxa2, Cer1"	Endoderm cells	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6020	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nkx6-1, Lhx1, Lhx5"	Neural lineages	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6021	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	Sox1	Neuroectoderm cells	Cell line	Epiblast stem cells	30118958	Stem Cell Res	A single cell transcriptional portrait of embryoid body differentiation and comparison to progenitors of the developing embryo	GSE100597
6022	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mature osns	Omp	Mature osns	Tissue	Epithelium	33027656	Cell Rep	Olfactory Stimulation Regulates the Birth of Neurons That Express Specific Odorant Receptors.	GSE157120
6023	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mb	"Mmp12, Mmp13, Spic"	Mb	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6024	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Sfrp5, Cldn10"	Non-ameloblast epithelium cells	Organoids	Epithelium	31481792	Nat Cell Biol	A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage	GSE131204
6025	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Si cells	"Ank2, Ccnb1"	Si cells	Organoids	Epithelium	31481792	Nat Cell Biol	A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage	GSE131204
6026	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt4, Krt13"	Squamous epithelial cells	Tissue	Epithelium	30069044	Nature	A revised airway epithelial hierarchy includes CFTR-expressing ionocytes	GSE103354
6027	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Krt8, Krt16"	Tumor cells	Tissue	Epithelium	30855280	J Clin Invest	Endothelial miR-30c suppresses tumor growth via inhibition of TGF-beta-induced Serpine1	GSE118904
6028	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	Rgs13	Tuft cells	Tissue	Epithelium	30069044	Nature	A revised airway epithelial hierarchy includes CFTR-expressing ionocytes	GSE103354
6029	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ciliated cells	Cdhr3	Ciliated cells	Tissue	Epithelium	30069044	Nature	A revised airway epithelial hierarchy includes CFTR-expressing ionocytes	GSE103354
6030	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Press16, Ly75, Enpep"	Cortical thymic epithelial cells	Cell line	Epithelium	30968547	Aging Cell	Cell type specific role of lamin B1 in thymus development and its inflammation driven reduction in thymus aging	NA
6031	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cycling cells	"Ccnb1, Birc5, Ung, Top2a, Cdc20, Ccnb2"	Cycling cells	Organoids	Epithelium	31481792	Nat Cell Biol	A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage	GSE131204
6032	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Vegfr2"	Endothelial cells	Tissue	Epithelium	30855280	J Clin Invest	Endothelial miR-30c suppresses tumor growth via inhibition of TGF-beta-induced Serpine1	GSE118904
6033	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Acta2	Fibroblasts	Tissue	Epithelium	30855280	J Clin Invest	Endothelial miR-30c suppresses tumor growth via inhibition of TGF-beta-induced Serpine1	GSE118904
6034	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Ccl21a, Ccl21b, Pdpn"	Junctional thymic Epithelial cells	Cell line	Epithelium	30968547	Aging Cell	Cell type specific role of lamin B1 in thymus development and its inflammation driven reduction in thymus aging	NA
6035	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Fcer1g, Tyrobp, C1qb, C1qc, Tmsb4, C1qa, B2m, H2-D1, Ftl1, Lyz2"	Immune cells	Organoids	Epithelium	31481792	Nat Cell Biol	A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage	GSE131204
6036	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Serpinf1, Pcolce, Msx1, Col3a1, Col1a1, Mfap4, Ctsk, Nbl1, Cxcl12, Prrx2"	Mesenchymal cells	Organoids	Epithelium	31481792	Nat Cell Biol	A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage	GSE131204
6037	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ameloblast cells	"Igfbpl1, Ank2"	Pre-ameloblast cells	Organoids	Epithelium	31481792	Nat Cell Biol	A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage	GSE131204
6038	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Sox2, Bmi1, Gli1, Lrig1"	Stem cells	Organoids	Epithelium	31481792	Nat Cell Biol	A large pool of actively cycling progenitors orchestrates self-renewal and injury repair of an ectodermal appendage	GSE131204
6039	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Csf1r, Fcgr3, Adgre1, Ms4a7"	Macrophages	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6040	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mrc1, Cd209f, Cd163"	Macrophages	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6041	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Aire, CD40, Cxcl13, II12a, Ccl5"	Medullary thymic Epithelial cells	Cell line	Epithelium	30968547	Aging Cell	Cell type specific role of lamin B1 in thymus development and its inflammation driven reduction in thymus aging	NA
6042	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rgs5, Des, Notch3"	Pericytes	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6043	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	ACE2	Enterocytes	Tissue	Epithelium	32404436	Sci Immunol	TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of Human small intestinal enterocytes	GSE149907
6044	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	Tmprss2	Goblet cells	Tissue	Epithelium	32404436	Sci Immunol	TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of Human small intestinal enterocytes	GSE149907
6045	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	CD45	Intraepithelial lymphocytes	Tissue	Epithelium	32404436	Sci Immunol	TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of Human small intestinal enterocytes	GSE149907
6046	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	cd44	Tuft cells	Tissue	Epithelium	32404436	Sci Immunol	TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of Human small intestinal enterocytes	GSE149907
6047	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Eya1, Plcb2, Myl1, Plet1, Cldn3, Cldn4, Enpep, Pth, Ptn, Pdpn, Lrrc23, Tekt1"	Progenitor cells	Cell line	Epithelium	30968547	Aging Cell	Cell type specific role of lamin B1 in thymus development and its inflammation driven reduction in thymus aging	NA
6048	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gap43	Immature olfactory sensory neurons (osns)	Tissue	Epithelium	33027656	Cell Rep	Olfactory Stimulation Regulates the Birth of Neurons That Express Specific Odorant Receptors.	GSE157120
6049	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b"	B cells	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6050	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	Cd4	CD4 T cells	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6051	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Cd8a, Cd8b1"	CD8 T cells	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6052	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Napsa, Traf1, Cd209a, Flt3"	Dendritic cells	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6053	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt17, Krt14, Krt5, Acta2, Myl9, Mylk, Myh11"	Myoepithelial	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6054	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Krt18, Krt8, Prlr, Pgr, Esr1, Cited1, Prom1"	Luminal HS	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6055	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Krt18, Krt8, Mfge8, Trf, Csn3, Wfdc18, Ltf, Elf5"	Luminal AV	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6056	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Kit, Aldh1a3, Cd14"	Luminal progenitor	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6057	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Wap, Glycam1, Olah"	Mature alveolar	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6058	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Col1a2, Col3a1, Fn1"	Fibroblasts	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6059	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Mmrn1, Prox1, Flt4, Ccl21a"	Lymphatic endothelial cells (LECs)	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6060	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Cd3d, Cd3e, Cd3g"	Lymphocytes	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6061	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd74, Lyz2"	Myeloid cells	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6062	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzma, Ncr1, Itgae"	Natural killer (NK) cells	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6063	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Sox17, Sele"	Vascular endothelial cells	Tissue	Epithelium	33378681	Cell Rep	Aging-Associated Alterations in Mammary Epithelia and Stroma Revealed by Single-Cell RNA Sequencing	GSE150580
6064	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Early retinal precursor cells	"Top2a, Ube2c"	Early retinal precursor cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6065	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Late retinal precursor cells	"Top2a, Ube2c"	Late retinal precursor cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6066	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Maturation	"CXCR2, S100a8"	Maturation	Tissue	Eye	33106668	Nat Immunol	A new neutrophil subset promotes CNS neuron survival and axon regeneration	GSE144637
6067	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Multipotent rpcs	"Vsx2, Hes1, Nr2e1"	Multipotent rpcs	Cell line	Eye	31260032	Invest Ophthalmol Vis Sci	Identification of Genes With Enriched Expression in Early Developing Mouse Cone Photoreceptors	GSE132272
6068	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Top2a, Ube2c, Atoh7, Olig2"	Neurogenic	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6069	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Olig2, Neurog2, Otx2, Atoh7"	Neurogenic rpcs	Cell line	Eye	31260032	Invest Ophthalmol Vis Sci	Identification of Genes With Enriched Expression in Early Developing Mouse Cone Photoreceptors	GSE132272
6070	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Photoreceptors	Olig2	Photoreceptor precursors	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6071	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Atoh7, Pou4f2"	Retinal ganglion cell (rgc)/amacrine (ac) rpcs	Cell line	Eye	31260032	Invest Ophthalmol Vis Sci	Identification of Genes With Enriched Expression in Early Developing Mouse Cone Photoreceptors	GSE132272
6072	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Bco2, Mmp2"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6073	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Fmo1, lhx9"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6074	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Fst	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6075	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Kcns1, Mmp14, Cys1, Tusc5"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6076	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Egln3, Sostdc1"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6077	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Cav1, Pdlim5, Chrdl1"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6078	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Pde1a	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6079	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Wisp1, Tg, Cgh9, C1ql2"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6080	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Pip5k1b, Slc7a11"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6081	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Pkib	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6082	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Prps2, Stxbp6, Tpbgl"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6083	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Adgrl2, Arhgap31"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6084	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Col12a1, Amigo2"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6085	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Jam2	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6086	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Bend4, Wnt11, Cmbl"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6087	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Creb3l2	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6088	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Nek7	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6089	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Gm13111, Adam7"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6090	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Uts2b, Esrrb, Anxa11, Lims2, AdamtS5"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6091	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Kcng1, Arghef26, Vcan, Kcns3"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6092	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Serpinb12, Fes, Gpx6, NetO1"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6093	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Krt81, Tgfb3, Fgd2, Nab2"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6094	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Adora2a, Chrnb4, Adgrg6, Tiparp"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6095	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Prox1, Prox1os, Cha1, Runx2"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6096	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Gna14	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6097	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Eya2	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6098	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Runx1	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6099	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Plpp3, Nfia, Gas1"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6100	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Fam19A4	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6101	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Vit	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6102	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Trhr	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6103	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Npy	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6104	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Mybpc3, Guca1b, Tff3, Il1rapl2"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6105	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Zic1	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6106	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Ptpn22, Gm26612, Itgb5, Ttn"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6107	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Frk, Tnfrsf11b, Hs3st3b1"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6108	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Sntn, GM11100, Etnppl, Stra6"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6109	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Erbb4	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6110	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Crisp1, GM2115, Tnc, Crh, Rph3al"	Retinal ganglion cells sub1	Tissue	Eye	30018341	Nat Commun	Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes	GSE115404
6111	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Pou4f2, Rbpms"	Retinal ganglion cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6112	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Rpe65, Rlbp1"	Retina pigment epithelium	Tissue	Eye	32196081	Journal of Experimental Medicine	Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid	GSE95835
6113	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	"Nrl, Rho, Crb1-B, Gnat1"	Rods	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6114	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Bhlhe23, Grm6, Pcp2"	Bipolar cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6115	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Thrb, Rxrg, Gngt2, Gnb3"	Cone photoreceptors	Cell line	Eye	31260032	Invest Ophthalmol Vis Sci	Identification of Genes With Enriched Expression in Early Developing Mouse Cone Photoreceptors	GSE132272
6116	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Gnat2, Opn1sw"	Cones	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6117	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	Ptprc	Hematopoietic cells	Tissue	Eye	32196081	Journal of Experimental Medicine	Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid	GSE95835
6118	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	Lhx1	Horizontal cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6119	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanocytes	"Pmel, Mlana"	Melanocytes	Tissue	Eye	32196081	Journal of Experimental Medicine	Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid	GSE95835
6120	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Crb1-A, Aqp4, Clu"	Muller glia cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6121	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Mrc	Alternative activated neutrophils	Tissue	Eye	33106668	Nat Immunol	A new neutrophil subset promotes CNS neuron survival and axon regeneration	GSE144637
6122	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam1, Flt1, Cldn5, Kdr, Vwf"	Endothelial cells	Tissue	Eye	32196081	Journal of Experimental Medicine	Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid	GSE95835
6123	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Cspg4, Acta2, Myh11, Pmel"	Smooth muscle cells	Tissue	Eye	32196081	Journal of Experimental Medicine	Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid	GSE95835
6124	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Pdgfra, Pdgfrb, Col1a1"	Stromal cells	Tissue	Eye	32196081	Journal of Experimental Medicine	Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid	GSE95835
6125	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Slc18a3, Tfap2a"	Amacrine cells	Organoids	Eye	32620864	Nat Commun	Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease	PRJNA547800
6126	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Mbp, Mag, Mpz"	Schwann cells	Tissue	Eye	32196081	Journal of Experimental Medicine	Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid	GSE95835
6127	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ci2c-like cells	"Zscan4, Oct4, Tcstv1, Dppa"	Ci2c-like cells	Tissue	Embros	29937202	Cell Stem Cell	Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming	GSE45719
6128	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cipscs	"Nanog, Sox17"	Cipscs	Tissue	Embros	29937202	Cell Stem Cell	Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming	GSE45719
6129	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Further reprogrammed cells in stage ii and iii	"Zscan4, Tcstv1"	Further reprogrammed cells in stage ii and iii	Tissue	Embros	29937202	Cell Stem Cell	Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming	GSE45719
6130	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mefs	"Prrx1, Twist2, Zeb2, Thy1, Fbn1"	Mefs	Tissue	Embros	29937202	Cell Stem Cell	Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming	GSE45719
6131	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Reprogrammed cells in stage i	"Gata4, Gata6, Sox17, Foxa2, Epcam, Epcam"	Reprogrammed cells in stage i	Tissue	Embros	29937202	Cell Stem Cell	Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming	GSE45719
6132	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Xen-like cells	"Sox17, Sall4, Gata4, Gata6"	Xen-like cells	Tissue	Embros	29937202	Cell Stem Cell	Single-Cell RNA-Seq Reveals Dynamic Early Embryonic-like Programs during Chemical Reprogramming	GSE45719
6133	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Fat	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6134	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5, Cd34"	Endothelial cells	Tissue	Fat	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6135	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Itgam, Cd68, C1qa, Lyz2, Cd14"	Myeloid cells	Tissue	Fat	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6136	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Irf8, Gzma, Nkg7"	Natural killer (NK) cells	Tissue	Fat	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6137	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Pdgfra, Cd34"	Mesenchymal progenitors	Tissue	Fat	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6138	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd8a, Cd4"	T cells	Tissue	Fat	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6139	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Mcam	Pericytes	Tissue	Foot	32877217	Am J Physiol Cell Physiol	Single-cell transcriptomic analysis identifies extensive heterogeneity in the cellular composition of mouse Achilles tendons	GSE138515
6140	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD45, CD206"	M2 macrophages	Tissue	Foot	32877217	Am J Physiol Cell Physiol	Single-cell transcriptomic analysis identifies extensive heterogeneity in the cellular composition of mouse Achilles tendons	GSE138515
6141	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	"Hba-a1, Hba-a2, Hbb-bt"	Red blood cells	Tissue	Foot	32877217	Am J Physiol Cell Physiol	Single-cell transcriptomic analysis identifies extensive heterogeneity in the cellular composition of mouse Achilles tendons	GSE138515
6142	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	CD31	Endothelial cells	Tissue	Foot	32877217	Am J Physiol Cell Physiol	Single-cell transcriptomic analysis identifies extensive heterogeneity in the cellular composition of mouse Achilles tendons	GSE138515
6143	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Plp1, Prx"	Nerve cells 1	Tissue	Foot	32877217	Am J Physiol Cell Physiol	Single-cell transcriptomic analysis identifies extensive heterogeneity in the cellular composition of mouse Achilles tendons	GSE138515
6144	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Ncam1, Lgi4"	Nerve cells 2	Tissue	Foot	32877217	Am J Physiol Cell Physiol	Single-cell transcriptomic analysis identifies extensive heterogeneity in the cellular composition of mouse Achilles tendons	GSE138515
6145	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Reactive microglia	Il1a	Reactive microglia	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6146	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Gja1	Astrocytes	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6147	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Flt1	Endothelial cells	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6148	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a7	Excitatory neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6149	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a7	Excitatory neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6150	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a7	Excitatory neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6151	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gad2	Inhibitory neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6152	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gad2	Inhibitory neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6153	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gad2	Inhibitory neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6154	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	C1qa	Microglia cells	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6155	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Snap25	Neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6156	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Snap25	Neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6157	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Snap25	Neurons	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6158	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Bmp4	Newly formed oligodendrocytes	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6159	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Pdgfra	Oligodendrocyte precursors	Tissue	Frontal cortex	31519873	Nat Commun	Cell type-specific transcriptional programs in Mouse prefrontal cortex during adolescence and addiction	GSE124952
6160	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aldoc	Astrocytes	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6161	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cldn5	Endothelial cells	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6162	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Igfbpl1	Interneurons	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6163	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mbp	Mature oligodendrocytes	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6164	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Aif1	Microglia cells	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6165	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Olig2	Oligodendrocytes	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6166	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	CamK2a	Pyramidal neurons	Tissue	Frontal cortex	31606247	Neuron	Recapitulation and Reversal of Schizophrenia-Related Phenotypes in Setd1a-Deficient Mouse	GSE123652
6167	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxp2, Tle4, Ephb1"	L6 CThPNs	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6168	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Trhr, Tshz2"	L5 near-projecting neurons (NPNs)	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6169	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Mdga1, Pou3f1"	L2/3 IT	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6170	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Rou3f1, Rorb"	L2/5 IT	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6171	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Oprk1	L6 ITPNs	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6172	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Htr3a	5-HT3R	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6173	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Lamp5	LAMP5	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6174	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Sst	SST	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6175	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Cdca7	Mig.INT	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6176	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Lhx5	CR	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6177	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Htr3a, Lamp5, Sst"	Interneurons	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6178	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Cdca7, Sp9"	Migrating cortical interneurons	Tissue	Frontal cortex	31711176	Cerebral Cortex	Cortical_oxp2_upports Behavioral Flexibility and Developmental Dopamine D1 Receptor Expression	GSE130653
6179	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Ube2c, Gal, Top2a"	Tumor cells1	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6180	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Bgn, MT2, Meg3"	Tumor cells2	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6181	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Grp, Tslp"	Tumor cells3	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6182	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ccl17, Ccl22, Ccr7"	Dendritic cells	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6183	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Igfbp7, Ctla2a, Col4a1"	Endothelial cells	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6184	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Mfap5, Mgp"	Fibroblasts	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6185	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Mylpf, Ttn, Acta1"	Muscle cells	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6186	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Mki67, Hist1h2ap"	Myeloid1	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6187	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Ly6c2, Plac8, Ms4a4c"	Myeloid2	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6188	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Apoe, Pf4, Ccl6"	Myeloid3	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6189	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"H2-Eb1, H2-Ab1"	Myeloid4	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6190	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Higd1b, Rgs5"	Myofibroblasts	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6191	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a9, Il1b, S100a8"	Neutrophils	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6192	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	"Igkc, Ly6d, Ighm"	Plasmacytoid dentritic cells	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6193	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Gzma, Nkg7, Ms4a4b"	T cells	NA	Gastrocnemius muscle	31462499	Proc Natl Acad Sci U S A	Neutrophils promote tumor resistance to radiation therapy	NA
6194	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Tie1"	Endothelium	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6195	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Head mesenchyme	"Olfr129, Onecut1"	Head mesenchyme	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6196	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Heart	"Hand2, Gata6"	Heart	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6197	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Presomitic mesoderm	"Hes7, Tbx6"	Presomitic mesoderm	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6198	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Somite	"Aldh1a2, Uncx4.1"	Somite	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6199	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	"Meox2, Pax3"	Differentiated somite	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6200	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	"Lfng, Mesp2, Ripply2, Dll1"	Differentiation front	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6201	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endoderm cells	"Col4a1, Epcam, Sox17"	Endoderm cells	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6202	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Etv2	Haemato-endothelial progenitors	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6203	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Kdr	Haemato-endothelial progenitors and endothelium	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6204	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Allantois	"Tbx4, Hoxa11, Ass1, Bmp7"	Allantois	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6205	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Pax6, Sox1, Hes3, Sox2"	Differentiated neural cells	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6206	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ectoderm cells	"Ephx2, Mt1, Utf1, Pou5f1"	Primordial-germ-cell-like or extra-embryonic ectoderm	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6207	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Wnt3a, Fgf17, Fgf8, Cyp26a1, Nkx1-2"	Tail bud containing neuromesodermal progenitors	Tissue	Gastruloids	32076263	Nature	Single-cell and spatial transcriptomics reveal somitogenesis in gastruloids	GSE123187
6208	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Double-positive cells	CD14	Double-positive cells	Tissue	Gland	29158510	Nat Commun	Construction of developmental lineage relationships in the Mouse mammary gland by single-cell RNA profiling	GSE103275
6209	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hormone sensing differentiated	"Esr1, Prlr, Pgr, S100a6, Cited1"	Hormone sensing differentiated	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6210	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hormone_x005f_x0002_responsive luminal (l-hr) cells	Prlr	Hormone_x005f_x0002_responsive luminal (l-hr) cells	Organoids	Gland	33086071	Cell Rep	Integrated Single-Cell Transcriptomics and Chromatin Accessibility Analysis Reveals Regulators of Mammary Epithelial Cell Identity	GSE157890
6211	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Des, Cspg4"	Pericyte cells	Cell line	Gland	32930441	Stem Cells	Single-cell profiling of long noncoding RNAs and their cell lineage commitment roles via RNA-DNA-DNA triplex formation in mammary epithelium	NA
6212	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Procr, Lgfbp4, Gng11, Zeb2"	Procr stem cells	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6213	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Procr, Gng11, Zeb2, Cdh5"	Procr stem cells	Tissue	Gland	33382976	Stem Cell Reports	AP-2gamma Is Required for Maintenance of Multipotent Mammary Stem Cells.	GSE143159
6214	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Secretory cells	Kit	Secretory luminal (l-sec) cells	Organoids	Gland	33086071	Cell Rep	Integrated Single-Cell Transcriptomics and Chromatin Accessibility Analysis Reveals Regulators of Mammary Epithelial Cell Identity	GSE157890
6215	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt4, Krt14, Pdpn, Etv5, Acta2"	Basal cells	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6216	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myoepithelial cells	"Oxtr, Acta2, Krt4, Krt14"	Myoepithelial cells	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6217	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	Creb3l2	Alveolar cells	Tissue	Gland	30089273	Cell Rep	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development	GSE111113
6218	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	"Cd14, Csn3, Krt8"	Alveolar precursors	Tissue	Gland	30089273	Cell Rep	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development	GSE111113
6219	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Itgb1, Krt14"	Basal cells	Tissue	Gland	30089273	Cell Rep	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development	GSE111113
6220	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Epcam, Cd49f"	Basal cells	Tissue	Gland	30089273	Cell Rep	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development	GSE111113
6221	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	Ehf	Basal cells	Tissue	Gland	30089273	Cell Rep	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development	GSE111113
6222	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd74	B cells	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6223	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Cd49f, Krt14, Krt5, Krt17"	Basal cells	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6224	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Esam, Pecam1"	Endothelial cells	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6225	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Vim, Fn1"	Stromal cells	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6226	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	"Wap, Csn2, Glycam1, Lalba"	Differentiated alveolar cells	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6227	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	CD55	Early progenitor cells	Tissue	Gland	29158510	Nat Commun	Construction of developmental lineage relationships in the Mouse mammary gland by single-cell RNA profiling	GSE103275
6228	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Trim29, Vim, Cldn6, Sox4"	Epithelial mesenchymal transition like cells	Tissue	Gland	33120014	Dev Cell	Limiting Self-Renewal of the Basal Compartment by PKA Activation Induces Differentiation and Alters the Evolution of Mammary Tumors	GSE158257
6229	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibrocytes	Col1a1	Fibrocytes	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6230	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Esr1, Prlr, Pgr, S100a6, Cited1, Aldh1a3, Cd14 , Kit"	Hormone sensing progenitors	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6231	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Atf4, Cebpd, Cebpb, Yy1"	ER+ luminal cells	Tissue	Gland	30089273	Cell Rep	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development	GSE111113
6232	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Cd24, Krt8, Krt18, Krt19"	Luminal cells	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6233	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Cd24, Krt8, Krt18, Krt19"	Luminal cells	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6234	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Krt19, Epcam"	Luminal epithelial cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6235	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Krt19, Epcam"	Luminal epithelial cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6236	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Pgr, Prlr, Foxa1, Gpx3, Esr1"	Luminal mature cells	Tissue	Gland	33120014	Dev Cell	Limiting Self-Renewal of the Basal Compartment by PKA Activation Induces Differentiation and Alters the Evolution of Mammary Tumors	GSE158257
6237	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Aldh1a3, Cd14, Kit"	Luminal progenitors	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6238	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"CD14, Kit, Lalba"	Luminal progenitors	Tissue	Gland	33120014	Dev Cell	Limiting Self-Renewal of the Basal Compartment by PKA Activation Induces Differentiation and Alters the Evolution of Mammary Tumors	GSE158257
6239	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Aldh1a3, Kit, Cd14, Krt18"	Luminal progenitors	Tissue	Gland	33382976	Stem Cell Reports	AP-2gamma Is Required for Maintenance of Multipotent Mammary Stem Cells.	GSE143159
6240	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd74, Cd14, Csf1r"	Macrophages	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6241	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Fcgr1	Macrophages	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6242	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6243	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Acta2, Krt14, Krt5, Mylk, Myl9, Tagln"	Basal cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6244	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Cd24a	Dendritic cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6245	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Id1, Pecam1, Egfl7, Apold1, Plvap, Lrg1, Fabp4"	Endothelial cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6246	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Col1a2, Col6a1, Mmp2, Tnxb"	Fibroblasts	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6247	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Klrb1c	Natural killer (NK) cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6248	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, Csf1r, Cd14, Mafb"	Macrophages	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6249	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd14, Retnla, Cd68, Cd163, C1qb"	Macrophages	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6250	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Ly6a, Krt8"	Mature luminal cells	Tissue	Gland	30089273	Cell Rep	Single-Cell Transcriptomes Distinguish Stem Cell State Changes and Lineage Specification Programs in Early Mammary Gland Development	GSE111113
6251	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Esr1, Pgr, Prlr, Epcam"	Mature luminal cells	Tissue	Gland	33382976	Stem Cell Reports	AP-2gamma Is Required for Maintenance of Multipotent Mammary Stem Cells.	GSE143159
6252	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Lef1, Crem"	Memory T cells	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6253	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	NA	Naive T cells	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6254	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Lef1, Sell"	Naive T cells	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6255	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Igkc, Ms4a1"	B cells	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6256	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ccl22, Xcr1"	Dendritic cells	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6257	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Prlr, Krt18"	Epithelial cells	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6258	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Lyve-1	Lymphatic endothelial cells (LECs)	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6259	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Ly6c2	Monocytes	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6260	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Nkg7"	Natural killer (NK) cells	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6261	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Wap, Csn2, Glycam1, Lalba, Aldh1a3, Cd14, Kit"	Progenitor alveolar cells	Tissue	Gland	29225342	Nat Commun	Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing	GSE106273
6262	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6263	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Siglech	Dendritic cells	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6264	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd14, Clec4e"	Dermal dendritic cells	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6265	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cd14, Tnip3, Retnla, Cd68"	Monocytes	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6266	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzma, Nkg7"	Natural killer (NK) cells	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6267	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Vim	Stromal fibroblasts	Tissue	Gland	32785175	Cancers (Basel)	Single-Cell RNA-seq Reveals Obesity-Induced Alterations in the Brca1-Mutated Mammary Gland Microenvironment	GSE152866
6268	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Eng, S1pr1, Emcn"	Endothelial cells	Cell line	Gland	32930441	Stem Cells	Single-cell profiling of long noncoding RNAs and their cell lineage commitment roles via RNA-DNA-DNA triplex formation in mammary epithelium	NA
6269	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cd24a, Cd29, Krt14, Krt18"	Epithelial cells	Cell line	Gland	32930441	Stem Cells	Single-cell profiling of long noncoding RNAs and their cell lineage commitment roles via RNA-DNA-DNA triplex formation in mammary epithelium	NA
6270	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Cd74, Cd72, Cd54"	Immune cells	Cell line	Gland	32930441	Stem Cells	Single-cell profiling of long noncoding RNAs and their cell lineage commitment roles via RNA-DNA-DNA triplex formation in mammary epithelium	NA
6271	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3	T cells	Tissue	Gland	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6272	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Gata3"	T cells	Tissue	Gland	31701034	Commun Biol	Single-cell RNA-sequencing analysis of estrogenand endocrine-disrupting chemical-induced reorganization of Mouse mammary gland	GSE125272
6273	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd8b1"	T cells	Tissue	Gland	32479261	eLife	Tissue-resident macrophages promote extracellular matrix homeostasis in the mammary gland stroma of nulliparous Mouse	GSE148209
6274	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	Krt14	Basal cells	Organoids	Gland	33086071	Cell Rep	Integrated Single-Cell Transcriptomics and Chromatin Accessibility Analysis Reveals Regulators of Mammary Epithelial Cell Identity	GSE157890
6275	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt14, Krt5, Snai2"	Basal cells	Tissue	Gland	33120014	Dev Cell	Limiting Self-Renewal of the Basal Compartment by PKA Activation Induces Differentiation and Alters the Evolution of Mammary Tumors	GSE158257
6276	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt14, Krt8, CD14"	Lumino-basal cells	Tissue	Gland	33120014	Dev Cell	Limiting Self-Renewal of the Basal Compartment by PKA Activation Induces Differentiation and Alters the Evolution of Mammary Tumors	GSE158257
6277	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt5, Krt14, Acta2, Cre"	Basal cells	Tissue	Gland	33382976	Stem Cell Reports	AP-2gamma Is Required for Maintenance of Multipotent Mammary Stem Cells.	GSE143159
6278	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Chief cells	Pgc	Chief cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6279	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Deep mucous cells	"Gif, Itln1"	Deep mucous cells	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6280	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gastric corpus metaplasia cells	Gkn3	Gastric corpus metaplasia cells	Tissue	Gut	32835664	Gastroenterology	Single-Cell Transcriptional Analyses Identify Lineage-Specific Epithelial Responses to Inflammation and Metaplastic Development in the Gastric Corpus	NA
6281	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lgr5, Axin2, Sox9"	Gastric stem cells	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6282	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mucous cells	Muc6	Gland mucous cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6283	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal cells	"Muc2, Cdx1"	Intestinal lineage	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6284	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	"Muc6, Pgc, Gif, Aqp5, Gkn3, Clcn3, Pbx1"	Cluster1	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6285	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	"Sprr2a1, Sptssb, Gkn2, Gsta1, Sprr2a3, Sppr2b"	Cluster2	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6286	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	"Srprk2, Lmo2, Sprr1a, Ifrd1, Erdr, Chka"	Cluster3	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6287	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	"Atp4a, Chia1"	Cluster4	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6288	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	NS	Cluster5	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6289	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	"Muc6, Pgc, Gif, Aqp5, Gkn3"	Infected-Cluster1	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6290	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	"Sprr2a1, Gkn2, Gsta4, Sprr2a3, Sppr2b"	Infected-Cluster2	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6291	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	Cfap69	Infected-Cluster3	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6292	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	Apoa1	Infected-Cluster4	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6293	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lgr5pos cells	Dclk1	Infected-Cluster5	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6294	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mucous cells	Muc5ac	Mucous cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6295	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mucous cells	Muc5ac	Mucous cells	Tissue	Gut	31235935	Nat Cell Biol	"R-spondin-3 induces secretory, antimicrobial Lgr5 + cells in the stomach"	GSE124930
6296	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Parietal cells	Atp4b	Parietal cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6297	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cell cycling cells	"AU040972, Hmgb2, Birc5, Smc5, Ube2c, Cdca3, H2afz, Cenpa, Stmn1, Top2a, Cdc20, Cks1b, Cdk1, Cenpf, Pttg1, Tuba1b, Smc2, 2810417H13Rik, 2700094K13Rik, Lgals1, Tubb5"	Cell cycling cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6298	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Ms4a1"	B cells	Tissue	Gut	30173915	Cell	Self-Maintaining Gut Macrophages Are Essential for Intestinal Homeostasis	NA
6299	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	"Itln1, Defa"	Paneth cells	Tissue	Gut	30173915	Cell	Self-Maintaining Gut Macrophages Are Essential for Intestinal Homeostasis	NA
6300	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ciliated cells	"Hmgb2, Elof1, Chchd10, Ift172, 1700016K19Rik, Cfap126, Tppp3, Ccdc153, Tmem212, Pifo, Mlf1, Meig1, 1700007K13Rik, Fam183b, Rsph1"	Ciliated cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6301	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt5, Hspb1, Krt14, Ecm1, Hspb8, Sfn, Fxyd3, Lmo1, Perp, Urah, Krt17, Mt2, Hcar2, Mt1, Ly6a"	Basal cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6302	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Elof1, Chchd10, Ift172, 1700016K19Rik, Cfap126, Tppp3, Ccdc153, 1700088E04Rik, Tmem212, Pifo, Mlf1, Meig1, Lrrc51, 1700007K13Rik, Fam183b, Tmem107, Ift43, Ccdc189, Rsph1, Arhgdig, 1110004E09Rik, Prr29, Tctex1d4, Cfap206, Spef1, 2410004P03Rik, AU040972, Bo"	Epithelial cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6303	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Sparc, Col3a1, Lgals1, Bgn, Igfbp7, Col1a1, Vim, Serpinh1, Serpinf1, Rcn3, Col1a2, Aebp1, B2m, Selm, Cst3, Cald1, Id3, Col5a2, Mxra8, Timp1, Pcolce, Cpxm1, Cd302, Mfap2, Fbln2, Dcn, Wbp5, Timp2, Tceal8, Efemp2, Ctsz, Ctla2a, Nsg1, Loxl1, Eva1b, Cxcl12, Ig"	Fibroblasts	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6304	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Acta2, Postn"	Myofibroblasts	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6305	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Stmn1, Tuba1b, Ccnb1, Smc2, Ccna2, Birc5, Cdca8, Cenpa, Ube2c, Cks1b, Spc24, Cdca3, Pbk, 2810417H13Rik, Cdc20, Lockd, Ccnb2, 2700094K13Rik, Cenpm, Cenpw, Pttg1, Lgals1, Ckap2, Cdk1, Tubb5, Tpx2, Ube2t, Racgap1, Aurka, Cks2, Spc25, Knstrn, Cenpf, Fam64a, C"	Proliferating fibroblasts	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6306	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Lgr5	Stem cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6307	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt5, Hspb1, Krt14, Ecm1, Hspb8, Sfn, Fxyd3, Lmo1, Ucp2, Perp, Urah, Krt17, Ociad2, Mt2, Hcar2, S100a10, Glul, Palmd, Cat, Mt1, Vsnl1, Pycard, Rab27b, Ly6a, Dusp6, App, Lgals3, Ifitm10, Anxa3, Pitx1, Phlda3, Hbegf, Serpinb5, Sostdc1, Anxa1, Gpx2, Anxa8, S"	Epithelial(basal) cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6308	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Ly6d, Gsta4, Wfdc2, Epcam, Spint2, Krt7, Fxyd3, Krt19, Eif3f, Cyp2f2, Gsto1, Sfn, Clu, Klf5, Avpi1, S100a14, Rab25, Krt8, Bcam, Perp, Cd24a, Cldn7, Sprr1a, Fam3c, Foxq1, S100a16, Ezr, Anxa8, Gpx2, Pthlh, Lmo7, Cd9, Ahr, Areg, Krt18, Ces1d, Ywhaq, Aqp5, Kr"	Epithelial(ciliated) cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6309	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, Cd68, Cd11b, Cd18, Cd45"	Macrophages	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6310	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, Cx3cr1, Fcgr1, Adgre1, Cd63"	Pan macrophages	Tissue	Gut	30173915	Cell	Self-Maintaining Gut Macrophages Are Essential for Intestinal Homeostasis	NA
6311	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Hmgb2, Birc5, Smc4, Ube2c, Cdca3, H2afz, Cenpa, Ccna2, Stmn1, Top2a, Cdc20, Cks1b, Cdk1, Nusap1, Cenpf, Cenpe, Pttg1, Ccnb1, Esco2, H2afv, Knstrn, Arl6ip1, Spc24, Mki67, Prc1, Ect2, 2810417H13Rik, Ccdc34, Cdca8, Ccnb2, Pbk, Tpx2, Aurkb, Hmgb1, Tacc3, Racg"	Proliferating epithelial cells	Organoids	Gut	30872643	Sci Rep	Single-cell transcriptome analysis identifies distinct cell types and niche signaling in a primary gastric organoid model	SRP104455
6312	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tubb3, Nefl, Kcnc3, Scn4b"	Spiral ganglion neurons type i	Tissue	Hair	30078710	Cell	Hair Cell Mechanotransduction Regulates Spontaneous Activity and Spiral Ganglion Subtype Specification in the Auditory System	GSE114759
6313	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Grm8	Spiral ganglion neurons type IA	Tissue	Hair	30078710	Cell	Hair Cell Mechanotransduction Regulates Spontaneous Activity and Spiral Ganglion Subtype Specification in the Auditory System	GSE114759
6314	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Prph, Gata3, Mafb, Th"	Spiral ganglion neurons type ii	Tissue	Hair	30078710	Cell	Hair Cell Mechanotransduction Regulates Spontaneous Activity and Spiral Ganglion Subtype Specification in the Auditory System	GSE114759
6315	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Ngfr	Spiral ganglion neurons type ii	Tissue	Hair	30078710	Cell	Hair Cell Mechanotransduction Regulates Spontaneous Activity and Spiral Ganglion Subtype Specification in the Auditory System	GSE114759
6316	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ng2 cells	Pdgfra	Ng2 cells	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6317	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pacemaker cells	Nms	Pacemaker cells	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6318	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Suprachiasmatic nucleus neuron	"Avp, Vip, Nms, Cck, C1ql3, Grp, Bdnf, Irs4"	Suprachiasmatic nucleus neuron	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6319	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tanycytes	Col23a1	Tanycytes	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6320	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	Tmem212	Ependymal cells	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6321	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Agt	Astrocytes	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6322	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Itm2a	Endothelial cells	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6323	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Hexb	Microglia cells	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6324	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Celf4	Neurons	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6325	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Plp1	Oligodendrocytes	Tissue	Head	32066983	Nat Neurosci	Spatiotemporal single-cell analysis of gene expression in the Mouse suprachiasmatic nucleus	"GSE117295, GSE118403, GSE132608"
6326	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiogenic population in sca1+	"Sca1, pdgfra"	Cardiogenic population in sca1+	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6327	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyopathy	Tnnt2	Cardiomyopathy	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6328	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cm	Top2a	Cm	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6329	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cm-atrial	Kcna5	Cm-atrial	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6330	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cm-avc	Oprk1	Cm-avc	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6331	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cm-lsv	Irx2	Cm-lsv	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6332	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cm-lv	Wdr93	Cm-lv	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6333	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cm-oft	Mybpc1	Cm-oft	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6334	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cm-ra	Shox2	Cm-ra	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6335	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cms	"Myh6, Nppa"	Cms	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6336	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Compact avn cells	"Cx30.2, Cx45"	Compact avn cells	Tissue	Heart	30765799	Sci Rep	Using Gjd3-CreEGFP Mouse to examine atrioventricular node morphology and composition	GSE118932
6337	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cp1	Crabp1	Cp1	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6338	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cp2	Foxf1	Cp2	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6339	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cp3	Tgfb1	Cp3	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6340	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Early icm	"Cxcl1, Plk2"	Early icm	Tissue	Heart	31271750	Cell Stem Cell	Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming	GSE131328
6341	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ecs	Cxcl16	Ecs	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6342	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi/endo	"Mmp3, Figf"	Epi/endo	Tissue	Heart	31271750	Cell Stem Cell	Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming	GSE131328
6343	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardium cells	"Tbx18, Mab21l2, Wt1, Hand1, Tcf21, Hand2"	Epicardium cells	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6344	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardium cells	"Clu, Dmkn"	Epicardium cells	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6345	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	First heart field	"Nkx2-5, Tbx5, Hcn4"	First heart field	Organoids	Heart	33176168	Cell Stem Cell	Capturing Cardiogenesis in Gastruloids.	GSE158999
6346	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	GATA1 cells	Gata1	GATA1 cells	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6347	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Il23r, Trgv2, Il-17a"	IL-17a gamma delta T cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6348	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Birc5, Top2a"	IL-17a neg gamma delta T cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6349	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immature cardiomyocytes (hand2osl low)	"Pparg, Cd36, Fli1, Sema6a, Kitl, Ptprb, Nav3, Tspan13, Efr3b, Prkch, Rasgrf2, Ptprg, Spata13, Myo10, Sybu, Shank3, Arhgap31, Lims2, Podxl, Nrp2, Pkp4, Itga6, Zbtb46, Adgrl2, Apbb2, Lnx1, Flt1, Adamts9, Mcf2l, Cdh5, Pdgfd, Ets1, Ablim3, Ccdc85a, Mgll, Ptpr"	Immature cardiomyocytes (hand2osl low)	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6350	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Inflammatory cells	Hif1a	Inflammation-associated cell	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6351	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Late icm	"Tnni3, Myl7"	Late icm	Tissue	Heart	31271750	Cell Stem Cell	Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming	GSE131328
6352	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lateral plate mesoderm	"Hand1, Foxf1, Hoxb6, Bmp4, Cfc1, Pitx2"	Lateral plate mesoderm	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6353	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mature cardiomyocytes	"Corin, Fhl2, Rbfox1, Myl2, Jph2, Trdn, Grm1, Mypn, Myocd, Ryr2, Ckmt2, Pde4d, Ldb3, Enah, Myom1, Cdh2, Pip5k1b, Sorbs1, Tnnt2, Esrrg, Kcnj3, Grb14, Itgb6, Pde4b, Pcdh7, Ppargc1a, Fgf13, Sorbs2, Mlip, Alpk2, Fhod3, Pde4dip, Nexn, Rcan2, Cpeb3, Magi2, Tnni3"	Mature cardiomyocytes	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6354	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mes	Rtn1	Mes	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6355	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"CD105, CD73, CD44, CD29, Scai, CD45, W8B2"	Mesenchymal stem cells	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6356	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Sca1	Mesenchymal stem cells	Tissue	Heart	31359001	Nat Med	Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis.	GSE131778
6357	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Nt5e, Eng"	Mesenchymal stem cells	Tissue	Heart	32962412	Circulation	Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human	NA
6358	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	"Kcnn3, Efnb2, Cp, Prox1, Ppfibp1, Slfn3, Sema6a, Lama4, Flt4, Nxn, Ntn1, Tc2n, Zfp521, Sncaip, Klhl4, Nrp2, Kif26b, Ptpn14, Prkcq, Tspan18, Sema3a, Prkag2, Prkcz, D5Ertd615e, Srgap3, Apba2, Sh3gl3, Gpm6a, Thsd4, Dapk2, Abi3bp, Fmnl2, Stox2, Galnt18, Pkhd1"	Mesothelial cells	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6359	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Modsmc	"Fn1, Mgp, Nupr1, Eln, Igfbp2, Tnfrsf11b"	Modsmc	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6360	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Modulated smc	"Tagln, Cnn1, Lgals3, FN1, Tnfrsf11b, Col1alpha1"	Modulated smc	Tissue	Heart	31359001	Nat Med	Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis.	GSE131778
6361	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monoblasts	"Celf2, Axl, Bicc1, Eya2, Lama2, Dcn, Igf1, Egfr, Gfpt2, Abca8b, Vcan, Scara5, Ebf2, Sdc2, Enpp2, Shank3, Fstl1, Adamts5, Fkbp5, Zeb1, Lims2, Lvrn, Papss2, Col5a2, Lamc1, Eng, Gsn, Fbn1, Epha7, Col15a1, Htra3, Pdgfra, Flt1, Pcsk6, Gpm6b, Vegfc, Tenm3, Gnao"	Monoblasts	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6362	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mural cells	"Cspg4, Pdgfrb"	Mural cells	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6363	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocardial	"Myh7, Myl4, Tnnc1, Tnnt2, Myl2"	Myocardial	Tissue	Heart	31365875	Cell Rep	Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.	NA
6364	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocardium	"Stard10, Kcna5, Vsnl1, Cav1, Nr2f2, Angpt1, Nppa"	Atria	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6365	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocardium	"Rspo3, Msx2, Tbx2, Tbx5, Vsnl1, Bmp2, Hand1"	Atrioventricular canal	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6366	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocardium	"Fhl1, Rgs5, Isl1, Tdgf1, Wnt5a, Sema3c, Hand2, Bmp4, Pitx2, Rspo3"	Outflow Tract	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6367	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocardium	"Shox2, Nr2f2, Wnt2, Vsnl1, Mab21l2, Tbx5"	Sinus Venosus	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6368	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocardium	"Myl2, Nppa, Myh7, Irx4, Hey2, Nppb, Cited1"	Ventricle	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6369	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocytes	Actn2	Myocytes	Tissue	Heart	31231540	Cell Discov	Single-cell imaging and transcriptomic analyses of endogenous cardiomyocyte dedifferentiation and cycling	GSE129175
6370	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Sox17, Stmn2"	"EC1, arteriole"	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6371	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cd300lg, Ramp3"	"EC2, capillary"	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6372	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Emcn, Vwf"	"EC3, venule"	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6373	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Flt4, Mmrn1"	"EC4, lymphatics"	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6374	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cxcr6, Icos, Cd3g, Il7r"	CXCR6+ T cells	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6375	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cd8a, Cd8b1, Nkg7"	CD8+ T cells	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6376	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	NA	"Bmx, Sema3g, Efnb2, Sox17, Hey1"	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6377	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	NA	"Nr2f2, Vwf"	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6378	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cd4, Lef1"	TC2- Cd4	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6379	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Mgl2, Cbr2, Folr2"	MAC-TR	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6380	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cxcl10, Rsad2, Ifit3, Ifit1, Ifi47"	MAC-IFNIC	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6381	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Retnlg, G0s2, Lcn2, Wfdc21, Pglyrp1"	MAC6	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6382	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Ear2, Eno3 Itgal Ace"	MAC7	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6383	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	Saa3 Ltc4s	MAC8	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6384	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nodal-ventricular (n-v) transitional cells	Myl2	Nodal-ventricular (n-v) transitional cells	Tissue	Heart	30765799	Sci Rep	Using Gjd3-CreEGFP Mouse to examine atrioventricular node morphology and composition	GSE118932
6385	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paraxial mesoderm	"Fst, Tcf15, Meox1, Foxc2, Foxd1, Foxc1"	Paraxial mesoderm	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6386	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericardial	"Upk3b, Msln, Myl7, Igfbp6, Igfbp5"	Pericardial	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6387	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Kif23, Mis18bp1, Prc1, Mki67, Top2a"	Proliferative cardiomyocytes	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6388	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Second heart field	"Tbx1, Isl1, Fgf10"	Second heart field	Organoids	Heart	33176168	Cell Stem Cell	Capturing Cardiogenesis in Gastruloids.	GSE158999
6389	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sinoatrial node	"Isl1, Tbx18, Hcn4, Tbx3, Bmp4, Smoc2"	Sinoatrial node	Organoids	Heart	31320323	Development	Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in Mouse	GSE130461
6390	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sinoatrial node head	"Smoc2, Tmsb4x, Meg3, Nrk, Egr1, Isl1, Bmp4, Sfrp1, Cited1, Sparc, Acta2, Sulf2, Mdk, H19, Lbh"	Sinoatrial node head	Organoids	Heart	31320323	Development	Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in Mouse	GSE130461
6391	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sinoatrial node junction	"Acvr1c, Cpne5, Nr2f1, Slc22a1, Peg3, Palld, Fst, Tbx20, Pam, Id2, Nr2f2, Gm42418, Ccnd2, Cldn11, Epha4"	Sinoatrial node junction	Organoids	Heart	31320323	Development	Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in Mouse	GSE130461
6392	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Cnn1, Acta2, Tagln2, Tagln"	Smooth muscle_pericyte-like cells	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6393	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T-helper 17 cells	"Tnfsf8, Cxcr6, Cd4, Il17a, Rora"	T-helper 17 cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6394	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T-natural killer	"Nkg7, Ms4a4b, Gzma"	T-natural killer	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6395	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ventricular cardiomyocytes	"Corin, Fhl2, Ptgds, Trdn, Grm1, Mypn, Myocd, Ryr2, Ckmt2, Pde4d, Ldb3, Oxct1, Ivns1abp, Myom1, Cdh2, Pip5k1b, Sorbs1, Tnnt2, Esrrg, Acss1, Pde4b, Pcdh7, Ppargc1a, Shroom3, Fgf13, Asb11, Mlip, Alpk2, Tbc1d4, Fhod3, Fstl4, Pde4dip, Nexn, Rcan2, Cpeb3, Myh6"	Ventricular cardiomyocytes	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6396	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Arterial cells	"Nrp1, Efnb2"	Arterial cells	Tissue	Heart	30075129	Cell Stem Cell	Endothelial Regeneration of Large Vessels Is a Biphasic Process Driven by Local Cells with Distinct Proliferative Capacities	"GSE115618, GSE116718"
6397	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Nppa, Myl7, Sln"	Atrial cardiomyocytes	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6398	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Pola1, Kif11, Lcorl, Atad5, Tmpo, E2f7, Top2a, Efcab11, Aoah, Cenpp, Depdc1b, Lcp1, Diaph3, Dab2, Atad2, Runx1, Cep192, Lmnb1, Nrp2, Prim2, Tnfrsf11a, Mrc1, Knl1, Tpx2, Ect2, Iqgap3, Adgrl2, Smc2, Cit, Ezh2, Mki67, Slc9a9, Myo1e, Kif23, Kif4, Brip1, Smc4"	Atrial cardiomyocytes	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6399	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Pam, Nppa, Myl4, Sln, Myl7"	Atrial cardiomyocytes	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6400	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	"Nppa, Itga6"	Atrial cells	Organoids	Heart	31320323	Development	Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in Mouse	GSE130461
6401	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	"Cx30.2, Cx43, Cx40, Nppa, Myl2_"	Atrial-nodal transitional cells	Tissue	Heart	30765799	Sci Rep	Using Gjd3-CreEGFP Mouse to examine atrioventricular node morphology and composition	GSE118932
6402	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	"Calca, Mest, Myl2, Myl3, Crip1, Itga6, Etv1, Casq1, Nppb, Obscn, Smpx, Myh7, Ankrd1, Hopx, Nppa"	Atrium	Organoids	Heart	31320323	Development	Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in Mouse	GSE130461
6403	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Cd209a	Dendritic cells	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6404	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam1"	Endothelial cells	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6405	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Cola1, Pdgfra, Tcf21"	Fibroblasts	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6406	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Ccr1, Csf3r, S100a9"	Granulocytes	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6407	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Ms4a1, Cd3e, Klrb1c, Ncr1"	Lymphocytes	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6408	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Acta2, Tagln"	Smooth muscle cells	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6409	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6410	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a1	Fibroblasts	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6411	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Myl9	Muscle cells	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6412	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblast-like cells	Dcn	Fibroblast-like cells	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6413	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle-like cells	Acta2	Smooth muscle-like cells	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6414	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rgs5, Des"	Pericytes	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6415	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Ly6d, Mzb1"	B cells	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6416	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd209a, Cd74, Flt3, H2-Eb1"	Dendritic cells	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6417	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"S100A8, S100A9, Ngp, Camp"	Granulocytes	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6418	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Cd3d, Nkg7, Cd8b1, Cd79a"	Lymphocytes	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6419	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	"Calca, Furin, Il1rl1"	Mast cells	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6420	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ly6c2, Ccr2, Csf1r"	Monocytes	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6421	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Adgre1, Itgax, Cd14, Csf1r, Lgals3, Ccr2, Cd68, Ly6c2, Cd209a"	Myeloid cells	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6422	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrb1c, Ncr1, Klra8, Klrc1"	Natural killer (NK) cells	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6423	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Cd14, Fcgr1, Csf1r"	Atherosclerosis-associated macrophages	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6424	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccl3, Il1b, Il1a, Nlrp3, Cebpb, Egr1, Phldal, Nfkbiz, Nfkbid, Ier3, Zpf36, Nr4a1"	Inflammatory macrophages	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6425	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"F13a1, Lyve1, Ccl24, Ccl9, Folr2, Cbr2, Mrc1, Pf4, Txnip"	Res-like macrophages	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6426	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Trem2, Cd9, Spp1, Hvcn1, Ctsd, Ctsb, Ctsz"	TREM2hi macrophages	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6427	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Itgam, Cd19, Spn, Ptprc, Kit, H2-Ab1"	B cells	Tissue	Heart	29545366	Circ Res	Atlas of the Immune Cell Repertoire in Mouse Atherosclerosis Defined by Single-Cell RNA-Sequencing and Mass Cytometry	GSE21419
6428	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Itgam, Itgax, Ly6c1, Ly6g, Fcer1g, Adgre1"	Myeloid cells	Tissue	Heart	29545366	Circ Res	Atlas of the Immune Cell Repertoire in Mouse Atherosclerosis Defined by Single-Cell RNA-Sequencing and Mass Cytometry	GSE21419
6429	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd5, Cd4, Cd8a, Cd8b1, Il2ra, Spn, Izumo1r"	T cells	Tissue	Heart	29545366	Circ Res	Atlas of the Immune Cell Repertoire in Mouse Atherosclerosis Defined by Single-Cell RNA-Sequencing and Mass Cytometry	GSE21419
6430	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"S100a8, S100a9, Cxcl2, Ccl2, Ccl3, F10, Tnf, Ly6c2"	Ly-6C+ inflammatory monocytes	Tissue	Heart	29545366	Circ Res	Atlas of the Immune Cell Repertoire in Mouse Atherosclerosis Defined by Single-Cell RNA-Sequencing and Mass Cytometry	GSE21419
6431	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Ranbp1, Tuba1b, Sae1, Tubb5, Myl1, Aldh1b1, Birc5, H2afz, 2810417H13Rik, Cks2, Stmn1, Pttg1, Ube2c"	Neural cells c3	Organoids	Heart	31320323	Development	Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in Mouse	GSE130461
6432	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	"Cdk1, Ccnb1"	Cardiac reprogramming of Thy1-positive (Thy1+) cells	Tissue	Heart	31271750	Cell Stem Cell	Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming	GSE131328
6433	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	Nkx2-5	Cardiac cells	Organoids	Heart	31320323	Development	Nkx2-5 defines a subpopulation of pacemaker cells and is essential for the physiological function of the sinoatrial node in Mouse	GSE130461
6434	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Gria3, Dlgap1, Map2, Abca8b, Klhl29, Aspa, Iqgap2, Gfra2, Matn2, Deptor, Il1rap, Ncam2, Afap1l2, Snca, Adam23, Frmd4a, Zeb2, Frmd5, Pappa, Epb41l4b, Chl1, Gpm6b, Tenm3, Il34, Cadm1, Scn7a, Kcnh8, Adgrl3, Slc22a23, Slc35f1, Adgrg6, Ncam1, Mbp, Egflam, Zfp5"	Cardiac glial cells	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6435	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	"Abcg2, Alcam, Cd34, Eng, Gata4, Ly6a, Mef2c, Nkx2.5, Ptprc"	Cardiac progenitors	Organoids	Heart	30104715	Sci Rep	In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells	GSE114284
6436	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	c-kit	Cardiac progenitors	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6437	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	cTnT	Cardiomyocytes	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6438	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	Tnni3	Cardiomyocytes	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6439	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	Tnni3	Cardiomyocytes	Tissue	Heart	31142541	Development	Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development	GSE122403
6440	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	Tnnt2	Cardiomyocytes	Tissue	Heart	31216470	Cell Rep	Rational Reprogramming of Cellular States by Combinatorial Perturbation	GSE117795
6441	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	NA	Cardiomyocytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6442	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	NA	Cardiomyocytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6443	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	NA	Cardiomyocytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6444	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"1110034G24Rik, 1700020I14Rik, 2010111I01Rik, 4930402H24Rik, 4930512H18Rik, 9130011E15Rik, A930015D03Rik, Aak1, Abcd3, Abhd18, Ablim1, Abtb2, Acacb, Acadm, Acat1, Aco2, Acot13, Acsl1, Acss1, Actn2, Acyp2, Adamts6, Adamtsl5, Adk, Adprhl1, Adra1a, Agl, Agtr1a, AI314180, Akap6, Alpk2, Alpk"	Cardiomyocytes(A)	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6445	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"9530026P05Rik, Abhd18, Ablim2, Acss1, Actc1, Actn2, Adam19, Adamts6, Adgrl2, Adprhl1, Aff2, Agl, Akap6, Alpk2, Angpt1, Ank2, Ank3, Ankrd1, Ano4, Arfgef1, Arhgap21, Arhgap31, Art1, Art3, Asb14, Asb2, Atcayos, Atp1a1, Atp2a2, Auts2, Bmpr1a, Cacnb2, Camk1d, Camk2d, Cap2, Casq2, Casz1, Ccdc141, C"	Cardiomyocytes(C)	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6446	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"1700016D06Rik, 1700020I14Rik, 2010107E04Rik, 2410015M20Rik, Acaa2, Acadl, Acadm, Acadvl, Acat1, Aco2, Acot13, Acsl1, Actc1, Actn2, Adgrl4, Adprhl1, Aes, Ak1, Aldoa, Ankrd1, Aqp1, Art1, Art3, Asb2, Asph, Asxl2, Atp1a1, Atp1a2, Atp2a2, Atp5a1, Atp5b, Atp5c1, Atp5d, Atp5e, Atp5f1, Atp5g1, Atp5"	Cardiomyocytes(B)	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6447	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Spi1, Adgre1, Cd163, Cmah, Ikzf1, Dock2, Aoah, Ly86, Syk, Mctp1, Iqgap2, Rnf180, Lcp1, Epsti1, Dab2, Slc7a8, Mtss1, Fam49b, Cd86, Runx1, Myo1f, Pik3ap1, Ptprj, Pstpip2, Inpp5d, Tnfrsf11a, Ptprc, Dclre1c, Mrc1, Zeb2, Kcnip4, Tbxas1, Frmd4b, Ctsc, Slc9a9, Z"	Cardiomyocytes	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6448	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	Myh6	Cardiomyocytes	Tissue	Heart	32220304	Dev Cell	Dynamic Transcriptional Responses to Injury of Regenerative and Non-regenerative Cardiomyocytes Revealed by Single-Nucleus RNA Sequencing	GSE130699
6449	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Myh6, Atp5b, Mdh2, Sod2, Mb"	CM4	Tissue	Heart	32220304	Dev Cell	Dynamic Transcriptional Responses to Injury of Regenerative and Non-regenerative Cardiomyocytes Revealed by Single-Nucleus RNA Sequencing	GSE130699
6450	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Myh6, Ddc"	CM3	Tissue	Heart	32220304	Dev Cell	Dynamic Transcriptional Responses to Injury of Regenerative and Non-regenerative Cardiomyocytes Revealed by Single-Nucleus RNA Sequencing	GSE130699
6451	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Myh6, Xirp2, Cd44, Ankrd1"	CM5	Tissue	Heart	32220304	Dev Cell	Dynamic Transcriptional Responses to Injury of Regenerative and Non-regenerative Cardiomyocytes Revealed by Single-Nucleus RNA Sequencing	GSE130699
6452	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	"Myh6, Top2a, Lockd, Casc5"	CM2	Tissue	Heart	32220304	Dev Cell	Dynamic Transcriptional Responses to Injury of Regenerative and Non-regenerative Cardiomyocytes Revealed by Single-Nucleus RNA Sequencing	GSE130699
6453	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	Actc1	Cardiomyocytes	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6454	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Flk1, Gata6"	Cardiovascular progenitors	Organoids	Heart	33176168	Cell Stem Cell	Capturing Cardiogenesis in Gastruloids.	GSE158999
6455	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5"	Endothelial cells	Tissue	Heart	30075129	Cell Stem Cell	Endothelial Regeneration of Large Vessels Is a Biphasic Process Driven by Local Cells with Distinct Proliferative Capacities	"GSE115618, GSE116718"
6456	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	Sema3g	Hematopoietic stem cells	Tissue	Heart	30075129	Cell Stem Cell	Endothelial Regeneration of Large Vessels Is a Biphasic Process Driven by Local Cells with Distinct Proliferative Capacities	"GSE115618, GSE116718"
6457	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cdh5	Endothelial cells	Organoids	Heart	30104715	Sci Rep	In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells	GSE114284
6458	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdgfra, Col1a1"	Fibroblasts	Organoids	Heart	30104715	Sci Rep	In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells	GSE114284
6459	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta2	Smooth muscle cells	Organoids	Heart	30104715	Sci Rep	In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells	GSE114284
6460	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	T cells	Organoids	Heart	30104715	Sci Rep	In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells	GSE114284
6461	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"CD31, CD105, vimentin"	Endothelial cells	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6462	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"DDR2, CD90"	Fibroblasts	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6463	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	"c-kit, Sca1"	Hematopoietic stem cells	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6464	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	NA	Smooth muscle cells	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6465	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Kdr	Endothelial cells	Tissue	Heart	30143541	Development	Pitx2 maintains mitochondrial function during regeneration to prevent myocardial fat deposition	GSE117893
6466	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Ccl21a	Lymphatic endothelial cells (LECs)	Tissue	Heart	30143541	Development	Pitx2 maintains mitochondrial function during regeneration to prevent myocardial fat deposition	GSE117893
6467	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Tagln	Vascular smooth muscle cells	Tissue	Heart	30143541	Development	Pitx2 maintains mitochondrial function during regeneration to prevent myocardial fat deposition	GSE117893
6468	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, H2-Eb1, Cd86, Selplg, Cd14"	Macrophages	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6469	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Ehd3	Aortic endothelial cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6470	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Fcgr1, C1qa"	Macrophages	Tissue	Heart	30538339	Nat Immunol	Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction	GSE119355
6471	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam1, Cav1, Fabp4"	Vascular endothelial cellss	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6472	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Ddr2, Tcf21, Col3a1, Col1a2, Col1a1"	Fibroblasts	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6473	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Dcn, Gsn"	Fibroblasts	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6474	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"C1qa, H2-Eb1"	Immune cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6475	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	C1qa	Immune cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6476	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"vimentin4, Dcn, Col1a1, Ddr2, Col3a1, Eln, Fn1, Acta, Tagln5"	Smooth muscle cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6477	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Myh11, Tcf21"	Myofibroblasts	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6478	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Myh11	Smooth muscle cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6479	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Fabp4, Cdh5, Cav1"	Vascular endothelial cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6480	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam1, Fabp4, Cav1"	Vascular endothelial cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6481	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	c-kit	Common myeloid progenitors	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6482	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Acta2, Tagln"	Vascular smooth muscle cells	Tissue	Heart	30385745	Nat Commun	Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy Mouse vessels	"GSE79436, GSE117963"
6483	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Acta2, Tagln, Ly6a"	VSMC-lineage cells	Tissue	Heart	30385745	Nat Commun	Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy Mouse vessels	"GSE79436, GSE117963"
6484	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Acta2, Tagln, Pde1c, Hand2"	AA region	Tissue	Heart	30385745	Nat Commun	Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy Mouse vessels	"GSE79436, GSE117963"
6485	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Acta2, Tagln, Hoxa7"	DT region	Tissue	Heart	30385745	Nat Commun	Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy Mouse vessels	"GSE79436, GSE117963"
6486	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Heart	30479344	Nat Commun	Macrophage-derived netrin-1 promotes abdominal aortic aneurysm formation by activating MMP3 in vascular smooth muscle cells	GSE118237
6487	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Itgax	Dendritic cells	Tissue	Heart	30479344	Nat Commun	Macrophage-derived netrin-1 promotes abdominal aortic aneurysm formation by activating MMP3 in vascular smooth muscle cells	GSE118237
6488	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Lef1, Ms4a4b, Cd8a"	Cytotoxic T cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6489	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79b, Cd79a, Ly6d, Ptprcap"	B cells	Tissue	Heart	30538339	Nat Immunol	Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction	GSE119355
6490	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ms4a7, Spp1"	Monocytes	Tissue	Heart	30538339	Nat Immunol	Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction	GSE119355
6491	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Sparc, Fabp4, Igfbp7, Crip2"	Stromal cells	Tissue	Heart	30538339	Nat Immunol	Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction	GSE119355
6492	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Csf1r, Cd14, Adgre1, Cd68"	"Canonical myeloid cell, monocyte, and macrophages"	Cell line	Heart	30830865	JCI Insight	"Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression"	GSE123587
6493	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocardial cells	Npr3	Endocardial cells	Tissue	Heart	30143541	Development	Pitx2 maintains mitochondrial function during regeneration to prevent myocardial fat deposition	GSE117893
6494	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocardial cells	"Npr3, Pecam1"	Endocardial cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6495	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocardial cells	Npr3	Endocardial cells	Tissue	Heart	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6496	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocardial cells	"Ecscr, Cdh5"	Endocardial cells	Tissue	Heart	31365875	Cell Rep	Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.	NA
6497	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocardial cells	"Efnb2, Vwf, Actn1, Plagl1, Nuak1, Pecam1, Nxn, Smoc1, Npr3, Rps6ka2, Crim1, Sncaip, Setbp1, Cemip2, Fgf14, Cfh, Ptpn14, Eng, Acvr1, Epha7, Unc13b, Eln, Plxna4, Foxp1, Tmtc1, Dennd5b, Bmx, Pir, Gpm6a, Pdlim3, Cdh11, Cgnl1, Thsd4, Kank1, Itgbl1, Kcnc2, Tmtc"	Endocardial cells	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6498	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocardial cells	"Tm4sf1, Cytl1, Tmem108, Vwf, Npr3"	Endocardial cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6499	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Irx5	Endocrine cells	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6500	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Plvap, Emcn, Sox17, Pecam1, Gpr116"	Endothelial/Endocardial cell	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6501	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Etv2, Tal1, Lmo2"	Hematoendothelial Progenitors	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6502	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Hand2, Msx1, Tbx20, Gata4, Nfatc1, Smad6"	Endothelial-to-Mesenchymal Transition cells	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6503	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Ms4a1"	B cells	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6504	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd209a, Itgam"	Dendritic cells	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6505	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Kdr, Pecam1"	EC1 (Endothelial cells 1)	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6506	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Pdgfra"	Fibroblasts	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6507	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd68, Itgam, Ifitm6, Lrg1, Mcemp1, Sell, Gm9733"	M1 monocyte	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6508	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrk1, Ccl5"	Natural killer (NK) cells	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6509	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"C1qb, C1qa, C1qc, Ms4a7"	M1 macrophage	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6510	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Hpgds, Olfml3, Cd83"	M2 macrophage	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6511	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	Rspo1	Epicardial cells	Tissue	Heart	30143541	Development	Pitx2 maintains mitochondrial function during regeneration to prevent myocardial fat deposition	GSE117893
6512	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	Wt1	Epicardial cells	Tissue	Heart	31142541	Development	Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development	GSE122403
6513	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	Lhx9	Epicardial cells	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6514	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	Wt1	Epicardial cells	Tissue	Heart	31216470	Cell Rep	Rational Reprogramming of Cellular States by Combinatorial Perturbation	GSE117795
6515	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	"Upk3b, Upk1b"	Epicardial cells	Tissue	Heart	31365875	Cell Rep	Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.	NA
6516	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	"1700112E06Rik, 9030624G23Rik, 9530026P05Rik, Abcb1b, Abi1, Adamtsl1, Adgrd1, Adk, Aebp1, Agap1, Aldh1a2, Ano1, Ano6, Ap4e1, Aqp1, Arhgap18, Arhgap29, Arhgef12, Arid4b, B4galt1, Bcam, Bicc1, Bicd1, Bmpr1a, Bnc2, Bsg, C3, Cacnb2, Cadm2, Cald1, Calr, Ccdc171"	Epicardial cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6517	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cldn5, Icam2, Esam, Tm4sf1, Egfl7"	Adventitial endothelial cells (ADV-ECs)	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6518	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd19, Ptprc"	B cells	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6519	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Flt3, Zbtb36, Itgax"	Dendritic cells	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6520	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6521	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Gypa, Snca"	Erythrocytes	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6522	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Ddr2, Col1a1, Serpinh1"	Fibroblasts	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6523	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Il1rl121, Gata3, Ptprc"	Innate lymphoid cells (ILCs)	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6524	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd14, Cebpb, Ptprc"	Monocytes/macrophages	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6525	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd14, Cebpb, Ptprc"	Monocytes/macrophages	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6526	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd14, Cebpb, Ptprc"	Monocytes/macrophages	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6527	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd14, Cebpb, Ptprc"	Monocytes/macrophages	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6528	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzma, Gzmb, Klrb1c, Ptprc"	Natural killer (NK) cells	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6529	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Tagln, Flna, Myh11, Tpm2, Acta2"	Smooth muscle cells	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6530	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Sca1, Cd34, Tbx18"	Stem cells	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6531	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	"1700112E06Rik, 9030624G23Rik, 9530026P05Rik, Abcb1b, Abi1, Adamtsl1, Adgrd1, Adk, Aebp1, Agap1, Aldh1a2, Ano1, Ano6, Ap4e1, Aqp1, Arhgap18, Arhgap29, Arhgef12, Arid4b, B4galt1, Bcam, Bicc1, Bicd1, Bmpr1a, Bnc2, Bsg, C3, Cacnb2, Cadm2, Cald1, Calr, Ccdc171"	Epicardial cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6532	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	"Rarres2, Igfbp5, Muc16, Msln, Upk3b"	Epicardial cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6533	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	"Wt1, Tbx1, Cebpb, Krt18"	Epicardial cells	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6534	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Plp1, Kcna1"	Glial cells	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6535	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Heart	31142541	Development	Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development	GSE122403
6536	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Fbln2	Mesenchymal cells	Tissue	Heart	31142541	Development	Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development	GSE122403
6537	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Gpihbp1, Pecam1, Ccl21a, Cytl1, Fabp4"	Endothelial cells	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6538	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Gpihbp1, Pecam1, Ccl21a, Cytl1, Fabp4"	Endothelial cells	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6539	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Gpihbp1, Pecam1, Ccl21a, Cytl1, Fabp4"	Endothelial cells	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6540	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Serpinf1, Lum, Clec3b, Gsn, Dcn"	Fibroblasts	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6541	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Pf4, C1qb, Retnla, C1qa, Lyz2"	Monocytes	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6542	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Tpm2, Myl9, Tagln, Acta2"	Vascular smooth muscle cells	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6543	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6544	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1A1	Cardiac fibroblasts	Tissue	Heart	31216470	Cell Rep	Rational Reprogramming of Cellular States by Combinatorial Perturbation	GSE117795
6545	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a1	Ccardiac fibroblastss	Tissue	Heart	31231540	Cell Discov	Single-cell imaging and transcriptomic analyses of endogenous cardiomyocyte dedifferentiation and cycling	GSE129175
6546	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cd31"	Endothelial cells	Tissue	Heart	31231540	Cell Discov	Single-cell imaging and transcriptomic analyses of endogenous cardiomyocyte dedifferentiation and cycling	GSE129175
6547	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Rerg	Smooth muscle cells	Tissue	Heart	31231540	Cell Discov	Single-cell imaging and transcriptomic analyses of endogenous cardiomyocyte dedifferentiation and cycling	GSE129175
6548	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Onecut2	Hepatocytes	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6549	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Lox, Ctgf"	Fibroblasts	Tissue	Heart	31271750	Cell Stem Cell	Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming	GSE131328
6550	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Spp1, Lyz2"	Myeloid cells	Tissue	Heart	31271750	Cell Stem Cell	Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming	GSE131328
6551	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	Acta2	Myofibroblasts	Tissue	Heart	31359001	Nat Med	Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis.	GSE131778
6552	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Postn, Cthrc1"	Mesenchymal cells	Tissue	Heart	31365875	Cell Rep	Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.	NA
6553	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Rgs5, Cxcl12, Acta2, Tagln, Cnn1, Myl9"	Vascular smooth muscle cells	Tissue	Heart	31365875	Cell Rep	Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.	NA
6554	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Tw2	Interstitial myogenic progenitor	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6555	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Leukocytes	Lyz2	Leukocytes	Tissue	Heart	29449267	Cancer Res	Single-Cell Transcriptome Analyses Reveal Endothelial cells Heterogeneity in Tumors and Changes following Antiangiogenic Treatment.	GSE110501
6556	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	CD31	Endothelial cells	Tissue	Heart	31572976	Nat Metab	Endothelial TGF-beta signalling drives vascular inflammation and atherosclerosis.	GSE134557
6557	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"PD-L2, CD301"	Alternatively activated M2 macrophages	Cell line	Heart	30830865	JCI Insight	"Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression"	GSE123587
6558	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Fcgr1"	Macrophages	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6559	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Csf1r, Fcgr1, Cd68, F13a1, Lyve1, Gas6"	Macrophages	Tissue	Heart	29545365	Circ Res	Single-Cell RNA-Seq Reveals the Transcriptional Landscape and Heterogeneity of Aortic Macrophages in Murine Atherosclerosis	GSE97310
6560	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Mrc1	Macrophages	Tissue	Heart	30143541	Development	Pitx2 maintains mitochondrial function during regeneration to prevent myocardial fat deposition	GSE117893
6561	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccl4, Cxcl2, Ccl3"	Inflammatory macrophages	Cell line	Heart	30830865	JCI Insight	"Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression"	GSE123587
6562	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd11b, Cd68, Adgre1"	Macrophages	Tissue	Heart	30479344	Nat Commun	Macrophage-derived netrin-1 promotes abdominal aortic aneurysm formation by activating MMP3 in vascular smooth muscle cells	GSE118237
6563	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	NA	Macrophages	Tissue	Heart	30538339	Nat Immunol	Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction	GSE119355
6564	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	NA	Macrophages	Tissue	Heart	30538339	Nat Immunol	Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction	GSE119355
6565	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Btg1, Ltb, Coro1a, Rac2, Cd52"	Macrophages	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6566	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Spi1	Macrophages	Tissue	Heart	31201182	Development	A cellular atlas of Pitx2- dependent cardiac development	GSE131181
6567	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Lys6C	Macrophages	Tissue	Heart	31216470	Cell Rep	Rational Reprogramming of Cellular States by Combinatorial Perturbation	GSE117795
6568	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, Cd45"	Macrophages	Tissue	Heart	31231540	Cell Discov	Single-cell imaging and transcriptomic analyses of endogenous cardiomyocyte dedifferentiation and cycling	GSE129175
6569	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Lgals3	Macrophages	Tissue	Heart	31359001	Nat Med	Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis.	GSE131778
6570	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Fcgr1, Adgre"	Macrophages	Tissue	Heart	31365875	Cell Rep	Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.	NA
6571	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Mac-2	Macrophages	Tissue	Heart	31572976	Nat Metab	Endothelial TGF-beta signalling drives vascular inflammation and atherosclerosis.	GSE134557
6572	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre, Cd68"	Macrophages	Tissue	Heart	31594470	Circ Res	Context-specific regulation of surface and soluble IL7R expression by an autoimmune risk allele	NA
6573	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Cd68, Csf1r"	Macrophages	Tissue	Heart	31988506	Nat Nanotechnol	Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis.	NA
6574	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, Lgals3, Trem2"	Macrophages	Tissue	Heart	31988506	Nat Nanotechnol	Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis.	NA
6575	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"1700112E06Rik, 4732471J01Rik, 4930402H24Rik, 4930556N13Rik, 4931406C07Rik, 4933406I18Rik, Aacs, Abcd3, Acaca, Acacb, Acadl, Acly, Aco2, Acox1, Acsl1, Acss2, Acss3, Acvr1c, Adam12, Adamts12, Adipoq, Adipor2, Adra1a, Adrb3, Agmo, Agpat2, Ahcyl2, Akap1, Aldh"	Adipocytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6576	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"1700112E06Rik, 4732471J01Rik, 4930402H24Rik, 4930556N13Rik, 4931406C07Rik, 4933406I18Rik, Aacs, Abcd3, Acaca, Acacb, Acadl, Acly, Aco2, Acox1, Acsl1, Acss2, Acss3, Acvr1c, Adam12, Adamts12, Adipoq, Adipor2, Adra1a, Adrb3, Agmo, Agpat2, Ahcyl2, Akap1, Aldh"	Adipocytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6577	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccl8, Fbxo32"	Macrophage cluster 3	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6578	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"C1qa, Cd68"	Macrophages	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6579	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	NA	Endothelial cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6580	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	NA	Endothelial cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6581	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	NA	Endothelial cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6582	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"1700112E06Rik, 4931406P16Rik, 9330175M20Rik, 9530026P05Rik, A930011G23Rik, Acer2, Airn, Akt3, Aplp2, Apoe, App, Arhgap31, Arhgef3, Asxl2, Atp1b3, Bace2, Bgn, Bmp6, Bmpr2, Bmx, Bsg, Calm2, Cd200, Cd81, Cd9, Cdh11, Cfh, Cgnl1, Chrm3, Clic1, Col5a2, Cox6a1, Cpe, Cped1, Crim1, Crip1, Crip2, Csga"	Endothelial (A)	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6583	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"1810011O10Rik, 4921511C10Rik, 4930448N21Rik, 4931406P16Rik, 9330175M20Rik, Ablim1, Actb, Actg1, Adgrf5, Adgrl2, Adgrl4, Apbb2, App, Aqp1, Arhgap18, Arhgap31, Arhgef3, Arl15, Atxn1, B2m, Bsg, Calm1, Cav1, Ccdc85a, Cd200, Cd36, Cd81, Cd9, Cdh13, Cdh5, Col4a1, Col4a2, Cox6a1, Cox6c, Crip1, Cr"	Endothelial (B)	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6584	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"1700025G04Rik, 4930448N21Rik, 4930578G10Rik, 4931406P16Rik, 9330175M20Rik, Abhd17b, Abi3bp, Adam10, Adamtsl1, Aplp2, App, Aqp1, Arap3, Arhgap29, Asap1, Atp11c, Calcrl, Ccl21a, Ccser1, Cd9, Chrm3, Cldn5, Cmip, Cp, Cped1, Cpne8, Crim1, Csgalnact1, Ctdspl, D5Ertd615e, Dab2, Dapk2, Dennd4a"	Endothelial (C)	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6585	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Gpr34	Macrophage cluster 4	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6586	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cd93	Macrophage cluster 5	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6587	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	NA	Fibroblasts	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6588	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	NA	Fibroblasts	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6589	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	NA	Fibroblasts	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6590	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	NA	Fibroblasts	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6591	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	NA	Fibroblasts	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6592	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	NA	Fibroblasts	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6593	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"4933406I18Rik, Acaca, Acacb, Acsl1, Acss3, Acvr1c, Adipor2, Car3, Cdo1, Cfd, Chpt1, Cidec, Dbi, Ebf1, Efna5, Erbb4, Fabp4, Fam13a, Fry, G0s2, Ghr, Gm26917, Gphn, Ifi27, Immp2l, Lipe, Neat1, Negr1, Nfia, Nrg4, Pcx, Pde3b, Pik3r1, Plcb1, Plin1, Pnpla3, Ppar"	Granulocytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6594	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"4933406I18Rik, Acaca, Acacb, Acsl1, Acss3, Acvr1c, Adipor2, Car3, Cdo1, Cfd, Chpt1, Cidec, Dbi, Ebf1, Efna5, Erbb4, Fabp4, Fam13a, Fry, G0s2, Ghr, Gm26917, Gphn, Ifi27, Immp2l, Lipe, Neat1, Negr1, Nfia, Nrg4, Pcx, Pde3b, Pik3r1, Plcb1, Plin1, Pnpla3, Ppar"	Granulocytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6595	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	NA	Immune cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6596	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	NA	Immune cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6597	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	NA	Immune cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6598	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	NA	Immune cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6599	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	NA	Immune cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6600	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	NA	Immune cells	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6601	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Vcan, Plac8, Ly6c2"	Macrophage cluster 6	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6602	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccr7, Wnt11, Clec10a, Tnip3"	Macrophage cluster 7	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6603	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Tnf, Il-10, Cd207, Vsig4"	Macrophage cluster 8	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6604	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre4, Treml4"	Macrophage cluster 9	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6605	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Pmp22	Macrophages 1	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6606	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Milr1, Cxcl9, Ly6i, Nos2, Arg1, Ass1"	Macrophages 2	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6607	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Macrophages	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6608	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Lyve1, Timd4, Retnla, Cd163, Folr2, Klf2"	Mature macrophages	Tissue	Heart	30538339	Nat Immunol	Self-renewing resident cardiac macrophages limit adverse remodeling following myocardial infarction	GSE119355
6609	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrg1, Klrb1c"	Natural killer (NK) cells	Tissue	Heart	31732166	Immunity	Tissue-specific macrophage responses to remote injury impact the outcome of subsequent local immune challenge	GSE104342
6610	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrg1, Klrb1c"	Natural killer (NK) cells	Tissue	Heart	31732166	Immunity	Tissue-specific macrophage responses to remote injury impact the outcome of subsequent local immune challenge	GSE104342
6611	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Spp1, Pf4, Lgals3, Ftl1, Ctsb, Ctsd, Acp5, C1qb, C1qa, Hmox1"	Macrophages	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6612	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Mrc1, Adgre1, Ptprc, Cd68"	Macrophages	Tissue	Heart	32674599	Circulation	Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis.	GSE150644
6613	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Csf1r, Mafb, Fcgr1"	Macrophages	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6614	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Csf1r, Mafb, Fcgr1"	Macrophages	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6615	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Lyz2, Ccl4, C1qb, Cxcl2, Cd74"	Macrophages	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6616	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Itgam"	Macrophages	Tissue	Heart	32917889	Nat Commun	Ontogeny of arterial macrophages defines their functions in homeostasis and inflammation	GSE155569
6617	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Itgam"	Macrophages	Tissue	Heart	32917889	Nat Commun	Ontogeny of arterial macrophages defines their functions in homeostasis and inflammation	GSE155569
6618	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Itgam"	Macrophages	Tissue	Heart	32917889	Nat Commun	Ontogeny of arterial macrophages defines their functions in homeostasis and inflammation	GSE155569
6619	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ly6c1, Lgals3"	Macrophages	Tissue	Heart	32962412	Circulation	Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human	NA
6620	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	CX3CR1	Stem-like macrophages	Cell line	Heart	30830865	JCI Insight	"Single-cell analysis of fate-mapped macrophages reveals heterogeneity, including stem-like properties, during atherosclerosis progression and regression"	GSE123587
6621	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, _l2r, _tprc_nd_l7r, CD45RO, CD127"	Memory T cells	Tissue	Heart	31988506	Nat Nanotechnol	Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis.	NA
6622	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	c-kit	Multipotent progenitors (mpps)	Organoids	Heart	30127033	Proc Natl Acad Sci U S A	Identification of a multipotent Twist2-expressing cell population in the adult heart	GSE118411
6623	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Isl1, Foxf1, Tbx1, Rgs5, Osr1, Fgf8"	Multipotent progenitors (mpps)	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6624	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Rgs5, Irx3, Hand2, Fgf8, 3632451O06Rik, Irx5, Smyd1, Mef2c, Isl1"	Anterior second heart field	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6625	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Six1, Ebf2, Ebf1.1, Lhx2, Tbx1, Tlx1"	Branchiomeric Muscle Progenitors	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6626	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Wnt2, Foxf1, Osr1, Gata4, Tbx5, Aldh1a2"	Posterior second heart field	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6627	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD19	B cells	Tissue	Heart	31945014	JCI Insight	Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men	GSE142515
6628	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myoblasts	"Mrvi1, Map2, Cacnb4, Plxdc1, Myo1b, Lin7a, Cfap54, Pde8b, Ebf2, Sema5a, Tnfrsf21, Nrxn1, Slc12a2, Pdgfrb, Rgs5, Plxdc2, Zeb2, Trpc3, Serpini1, Gucy1b1, Tbc1d1, Cald1, Rerg, Abcc9, Ano1, Dlc1, Il34, Arhgef17, Gucy1a1, Cacna1a, Art3, Mdga2, Dgkb, Adgrl3, In"	Myoblasts	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6629	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd209a, Flt3, Itgax"	Dendritic cells	Tissue	Heart	31988506	Nat Nanotechnol	Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis.	NA
6630	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Csf3r, S100a9"	Granulocytes	Tissue	Heart	31988506	Nat Nanotechnol	Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis.	NA
6631	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ccr2, Ly6c2, Itgam"	Monocytes	Tissue	Heart	31988506	Nat Nanotechnol	Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis.	NA
6632	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Spp1, Acta2, Mgp"	Smooth muscle cells	Tissue	Heart	31988506	Nat Nanotechnol	Pro-efferocytic nanoparticles are specifically taken up by lesional macrophages and prevent atherosclerosis.	NA
6633	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Pparg, Lrp3, Slc1a5, Prkar2b, Slc1a3, Por, Acsl1, Slc36a2, Acaca, Tshr, Smoc1, Adcy5, Csad, Pcsk5, Pcx, Gpam, Cyp2e1, Rgs7, Acvr1c, Pck1, Car3, Bnc2, Scp2, Gpat3, Adipor2, Cidec, Plin1, Pde3b, Car5b, Slc27a1, Nrg4, Cdo1, Dpyd, Art3, Hacd2, Acss3, Sik2, Fa"	Adipocytes	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6634	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Clec2g, Bcl11a, Cacna1e, Arhgef18, Pax5, Slamf6, Cmah, Ikzf3, Ikzf1, Dock2, Ly86, Syk, St6gal1, Runx1, Satb1, Pik3ap1, Stk17b, Inpp5d, Tmem163, Ptprc, Ralgps2, Cr2, Kynu, Itga4, Kcnq5, Coro2a, Rhoh, Stap1, Foxp1, Fchsd2, Swap70, Btk, Pou2af1, Ccnd3, Arhga"	B cells	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6635	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Spi1, Adgre1, Cd163, Cmah, Ikzf1, Dock2, Aoah, Ly86, Syk, Mctp1, Iqgap2, Rnf180, Lcp1, Epsti1, Dab2, Slc7a8, Mtss1, Fam49b, Cd86, Runx1, Myo1f, Pik3ap1, Ptprj, Pstpip2, Inpp5d, Tnfrsf11a, Ptprc, Dclre1c, Mrc1, Zeb2, Kcnip4, Tbxas1, Frmd4b, Ctsc, Pde3b, Sl"	Cardiomyocyte-like endothelial cellss	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6636	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Corin, Fhl2, Rbfox1, Myl2, Jph2, Trdn, Grm1, Mypn, Myocd, Dpf3, Ryr2, Ckmt2, Pde4d, Ldb3, Ivns1abp, Myom1, Cdh2, Pip5k1b, Sorbs1, Tnnt2, Esrrg, Grb14, Itgb6, Pde4b, Pcdh7, Fgf13, Sorbs2, Mlip, Alpk2, Ppargc1b, Fhod3, Pde4dip, Nexn, Prdm16, Rcan2, Cpeb3, M"	Endothelial cells myo10 high	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6637	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Hdac9, Rasa4, B4galnt2, Fli1, Slfn3, Sema6a, Kitl, Ptprb, Nav3, Pecam1, Prkch, Rasgrf2, Ptprg, Shank3, Lims2, Podxl, Mgat4a, Pkp4, Itga6, Zbtb46, Adgrl2, D5Ertd615e, Flt1, Slc6a6, Mcf2l, Vegfc, Kirrel3, Ccdc85a, Mgll, Fgd5, Kcnc2, Tmtc2, Meox2, Eepd1, Etl"	Endothelial cells myo10 low	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6638	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Celf2, Axl, Bicc1, Eya2, Lama2, Dcn, Egfr, Gfpt2, Abca8b, Meg3, Vcan, Scara5, Ebf2, Sdc2, Enpp2, Fstl1, Adamts5, Fkbp5, Zeb1, Lvrn, Col5a2, Col3a1, Lamc1, Ddr2, Plxdc2, Fbn1, Dclk1, Col15a1, Bnc2, Htra3, Pdgfra, Foxp2, Pcsk6, Gpm6b, Tenm3, Gnao1, Bmper, R"	Endothelial-derived fibroblasts	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6639	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Celf2, Fbln1, Bicc1, Eya2, Dcn, Igf1, Egfr, Meg3, Vcan, Scara5, Ebf2, Angpt1, Vit, Fkbp5, Papss2, Col5a2, Col3a1, Cfh, Gsn, Mmp16, Svep1, Cntfr, Bnc2, Htra3, Foxp2, Eln, Nox4, Aff2, Col4a6, Gpm6b, Slit2, Pdlim3, Gnao1, Bmper, Tbx20, Rora, Thsd7a, Itgbl1"	Epicardial-derived fibroblasts	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6640	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Mrvi1, Map2, Cacnb4, Plxdc1, Myo1b, Lin7a, Cfap54, Pde8b, Sema5a, Tnfrsf21, Nrxn1, Slc12a2, Pdgfrb, Mark1, Frmd4a, Rgs5, Trpc3, Serpini1, Gucy1b1, Errfi1, Tbc1d1, Cald1, Rerg, Abcc9, Ano1, Dlc1, Il34, Arhgef17, Gucy1a1, Art3, Mdga2, Dgkb, Adgrl3, Inpp4b"	Monocytes	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6641	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gria3, Bicd1, Rbfox1, Wt1, Sulf1, Wwc1, Efemp1, Npas3, Pde10a, Crim1, C3, Myo5b, Col3a1, Il18r1, Gpr39, Adam33, Kcnq5, Bnc2, Dnajc6, Sema3c, Shroom3, Plxna4, Ano1, Gpm6a, Cdh11, Thsd4, Kank1, Ptpn13, Grip1, Pawr, Slc2a13, Cdon, Pkhd1l1, Arhgap18, Tbce, Wd"	Neural crest-derived fibroblasts	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6642	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Corin, Tbx5, Myocd, Rgs6, Dpf3, Ryr2, Cap2, Ldb3, Angpt1, Fgf12, Enah, Myom1, Pip5k1b, Fgf14, Rp1, Pam, Tmem163, Tnnt2, Esrrg, Kcnj3, Zfp385b, Acss1, Pde4b, Pcdh7, Ppargc1a, Shroom3, Mtus2, Anapc15, Dkk3, Mlip, Alpk2, Tbc1d4, Rxfp1, Ano4, Pdzrn3, Pdzrn4"	Smooth muscle cells	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6643	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Tcf7, Il7r, Arhgef18, Cd247, Slamf6, Cmah, Ikzf3, Ikzf1, Peli1, Dock2, Itk, Pik3r5, Iqgap2, Emb, Sidt1, Runx1, Satb1, Myo1f, Ms4a6b, Dgka, Il18r1, Ptprc, Prkcq, Itga4, Rasgrp1, Lef1, Kcnq5, Coro2a, Rhoh, Foxp1, Pde3b, Ets1, Cd226, Ccnd3, Arhgap45, Ripor2"	Vascular endothelial cells	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6644	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Dlx5, Dlx2, Twist1, Nr2f1, Barx1"	Neural crest cells	Tissue	Heart	31341279	Nature	Single-cell analysis of cardiogenesis reveals basis for organ level developmental defects	NA
6645	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Msx1, Twist, Sox9"	Neural crest-derived cells	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6646	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vwa1, Prnp, Cnp, Gpm6b, Mbp"	Neuronal cells	Tissue	Heart	31146585	Circulation	Single-Cell Analysis of the Normal Mouse Aorta Reveals Functionally Distinct Endothelial cells Populations	NA
6647	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Dtx3, Trpc3, Notch3, Abcc9, Pgdfrb, Rgs5, Steap4, Kcnj8"	Neuronal cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6648	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Dlst, Hnrnpa2b1, Sod2, Ppp1cb, Lpl, Pitpna, Trdn, Nmbr, Hexb, Ldb3, Nisch, Ndufa5, Hsp90ab1, Clip4, Grm8, Gpam, Rabgef1, Phkg1, Pam, Zfp106, Car1, Nceh1, Fastk, Tsc22d4, Coq7, Rps3, Fgfr2, Tpm1, Zranb3, Cox6b1, Zc3h7a, Hrc, Nexn, Camk1d, Ttc41, Bri3, Yjef"	Neuronal cells (ano1 high)	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6649	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Efnb2, Col18a1, St8sia6, B4galnt2, Utrn, Nuak1, Ptprb, Efr3b, Pecam1, Fbln5, Arhgef28, Rasgrf2, Spata13, Myo10, Arhgap31, Epas1, Map4k3, Lama3, Sncaip, Pcsk5, Apba1, Afap1l2, Eps8l2, Podxl, Eng, Stmn2, Mecom, Apbb2, Flt1, Eln, Slc6a6, Adipor2, Bmx, Vegfc"	Neuronal cells (ano1 low)	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6650	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Abi1, Arhgap18, Bicc1, Bicd1, C3, Cdh11, Cdon, Celf2, Col3a1, Crip1, Dpp4, Efemp1, Efna5, Flrt2, Gpc3, Gpm6a, Igfbp5, Igfbp6, Il1rapl1, Kcnd2, Mast4, Muc16, Pbx1, Pcdh15, Pkhd1l1, Plce1, Plxna4, Ptprd, Rarres2, Rbfox1, Sema3d, Slit3, Sox6, Sugct, Sulf1, S"	Neuronal like	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6651	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Abi1, Arhgap18, Bicc1, Bicd1, C3, Cdh11, Cdon, Celf2, Col3a1, Crip1, Dpp4, Efemp1, Efna5, Flrt2, Gpc3, Gpm6a, Igfbp5, Igfbp6, Il1rapl1, Kcnd2, Mast4, Muc16, Pbx1, Pcdh15, Pkhd1l1, Plce1, Plxna4, Ptprd, Rarres2, Rbfox1, Sema3d, Slit3, Sox6, Sugct, Sulf1, S"	Neuronal like	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6652	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Oasl2, Ngp, S100a8, Il18bp, Prok2, S100a9"	Neutrophils	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6653	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Ly6g	Neutrophils	Tissue	Heart	30479344	Nat Commun	Macrophage-derived netrin-1 promotes abdominal aortic aneurysm formation by activating MMP3 in vascular smooth muscle cells	GSE118237
6654	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, H2-DMb2"	B cells	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6655	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"H2ab1, Cd74"	Dendritic cells	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6656	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Fabp4, Pecam1"	Endothelial cells	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6657	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Gsn, Dcn"	Fibroblasts 1	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6658	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Wif1, Dkk3"	Fibroblasts 2	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6659	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Mt2, Timp1"	Fibroblasts 3	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6660	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"S100a8, S100a9"	Granulocytes	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6661	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Lyve1, Cldn5"	Lymphatic endothelial cells (LECs)	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6662	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	NA	Monocytes	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6663	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	NA	Monocytes	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6664	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Myofb, Cthrc1, Acta2, Postn"	Myofibroblasts	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6665	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Oasl2, Il18bp, Cxcl3, Gbps"	"L1a neutrophils, proinflammatory neutrophils"	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6666	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Rgs5, Vtn, Kcnj8"	Smooth muscle cells	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6667	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	S100a8	Neutrophils	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6668	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ngp, Prok2, Mmp8"	"Ngp mmp8 neutrophils, profibrotic neutrophi"	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6669	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a8, S100a9, Clec4e, Il1b, G0s2, Retnlg, Ifitm1, Gm5483, Cxcl2, Ccrl2"	Neutrophils	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6670	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"P2ry14, Pdgfrb"	Pericytes	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6671	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Pdgfrb	Pericytes	Organoids	Heart	30104715	Sci Rep	In situ transcriptome characteristics are lost following culture adaptation of adult cardiac stem cells	GSE114284
6672	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Trpc3	Pericytes	Tissue	Heart	30143541	Development	Pitx2 maintains mitochondrial function during regeneration to prevent myocardial fat deposition	GSE117893
6673	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"9530026P05Rik, Abcc9, Adap2, Adap2os, Adgrl3, Airn, Akap13, Ano1, Apbb2, Arhgap26, Arhgap42, Arhgap6, Art3, Aspn, Cacna2d1, Cacnb4, Cald1, Chn1, Cobll1, Col4a1, Cped1, Creb3l2, Daam1, Dgkb, Dlc1, Dock6, Dtx3, Ebf1, Ebf2, Eif4g3, Epb41l2, Eps8, Farp1, Ferm"	Pericytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6674	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"9530026P05Rik, Abcc9, Adap2, Adap2os, Adgrl3, Airn, Akap13, Ano1, Apbb2, Arhgap26, Arhgap42, Arhgap6, Art3, Aspn, Cacna2d1, Cacnb4, Cald1, Chn1, Cobll1, Col4a1, Cped1, Creb3l2, Daam1, Dgkb, Dlc1, Dock6, Dtx3, Ebf1, Ebf2, Eif4g3, Epb41l2, Eps8, Farp1, Ferm"	Pericytes	Tissue	Heart	31723062	JCI Insight	Transcriptional heterogeneity of fibroblasts is a hallmark of the aging heart	NA
6675	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	"Scd1, Acaca, Ctd, Plin1, Car3"	Adipocytes	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6676	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Uba52, Rn45s, Spnb2, Sdpr"	B cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6677	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Arthgap45, Cd52, Gimap3, Il7r, Ms4a4b"	Endothelial cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6678	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Tagln, Acta2"	Soomth muscle cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6679	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Flt4, Reln, Mmrn1, Ccl21a"	Vascular endothelial cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6680	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	"Jchain, Eaf2, Ighj3"	Plasma cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6681	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	"Jchain, Sdc1"	Plasma cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6682	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	"Ccr9, Klk1"	Plasmacytoid dentritic cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6683	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Platelet	Pf4	Platelet	Tissue	Heart	31694925	Sci Transl Med	Platelet regulation of myeloid suppressor of cytokine signaling 3 accelerates atherosclerosis	NA
6684	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6685	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cst3, Sept3"	Cst3+Sept3+ dendritic cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6686	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Flt3	Dendritic cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6687	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cd34, Dcn"	Endothelial cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6688	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Il12b, Cacnb3"	Il12b+Cacnb3+ dendritic cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6689	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ms4a1, Cd19, Ighd"	Immature B cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6690	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Gata3, Il5"	Innate lymphoid cells (ILCs)	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6691	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Ifng, Gzma"	Natural killer (NK) cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6692	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Klf2, Pecam1, Cdh5"	Endothelial cells	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6693	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts-like cells	"Tcf21, Fn1"	Fibroblasts-like cells	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6694	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	Ctla2a	Lymphoid	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6695	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Fcer1g	Myeloid cells	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6696	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ly6d, Mzb1, Siglech, Igkc, Klk1, Ighm, Iglc1, Plac8"	B cells	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6697	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Plbd1, H2-Eb1, H2-Aa, H2-DMa, H2-DMb1, H2-Ab1, Cd74, Naaa, Cst3"	Dendritic cells	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6698	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Ctla2a, Egfl7, Ramp2, Cdh5, Cldh5, Plvap, Fabp4, Igfbp3"	Endothelial cells	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6699	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Lgals7, Msln, Upk3b, Igfbp6, Dmkn, Ptgis, C3"	Epithelial cells	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6700	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Mfap5, Col8a1, Cthrc1, Fbln2"	Fibroblasts	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6701	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Gm13889, Rgs5, Mustn1, Myl9, Tagln"	Smooth muscle cells	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6702	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	Hemgn	Red blood cells	Tissue	Heart	31142541	Development	Single cell expression analysis reveals anatomical and cell cycle-dependent transcriptional shifts during heart development	GSE122403
6703	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	Hba-a1	Red blood cells	Tissue	Heart	32521264	Cell Rep	PRMT1-p53 Pathway Controls Epicardial EMT and Invasion	GSE144271
6704	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Egfl7, Claudin-5"	Endothelial cells	Tissue	Heart	32668254	Cell Rep	Antagonistic Activities of Vegfr3/Flt4 and Notch1b Fine-tune Mechanosensitive Signaling during Zebrafish Cardiac Valvulogenesis	GSE136786
6705	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Snail1, Tgfb2"	Mesenchymal cells	Tissue	Heart	32668254	Cell Rep	Antagonistic Activities of Vegfr3/Flt4 and Notch1b Fine-tune Mechanosensitive Signaling during Zebrafish Cardiac Valvulogenesis	GSE136786
6706	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Twist, Prrx2, Loxl"	Transitioning to mesenchymal cells	Tissue	Heart	32668254	Cell Rep	Antagonistic Activities of Vegfr3/Flt4 and Notch1b Fine-tune Mechanosensitive Signaling during Zebrafish Cardiac Valvulogenesis	GSE136786
6707	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd4, Foxp3, Ctla4"	Regulatory T cells (Treg)	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6708	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam1, Vwf, Nos3"	Endothelial cells	Tissue	Heart	32674599	Circulation	Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis.	GSE150644
6709	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Acta2"	Smooth muscle cells	Tissue	Heart	32674599	Circulation	Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis.	GSE150644
6710	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79a, Jchain"	B cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6711	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79a, Jchain"	B cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6712	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Flt3	Dendritic cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6713	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Flt3	Dendritic cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6714	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Flt3	Dendritic cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6715	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Flt3	Dendritic cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6716	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5, Kdr, Tie1"	Endothelial cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6717	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5, Kdr, Tie1"	Endothelial cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6718	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Lum, Dcn, Cd34, Pdgfra, Ly6a"	Mesenchymal stem_stromal cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6719	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cd14, Fcgr3"	Monocytes	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6720	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Gzmb, Fasl, Klrb1c, Klra3, Fcer1g, Gzma"	Natural killer (NK) cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6721	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cldn5, Ctla2a, Nts, Ccl21a"	Endothelial cells	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6722	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Hsd11b1, Dpep1, Cygb, Gdf10, Smoc2"	Fibroblasts 1	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6723	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"1500015O10Rik, Prg4, Comp, Wif1, Thbs1"	Fibroblasts 2	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6724	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Ly6a, Clec3b, C3, Mfap5"	Ly6a fibroblasts	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6725	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Acta2, Myl9, Myh11, Tpm2, Tagln"	Smooth muscle cells	Tissue	Heart	32698686	Arterioscler Thromb Vasc Biol	Single-Cell Transcriptomic Profiling of Vascular Smooth Muscle Cell Phenotype Modulation in Marfan Syndrome Aortic Aneurysm	GSE153534
6726	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ebf1, Cd79a, Cd79b"	B cells	Tissue	Heart	32724455	Theranostics	Specific ablation of CD4+ T-cells promotes heart regeneration in juvenile Mouse	NA
6727	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Plp1, Cnp"	Schwann cells	Tissue	Heart	29346760	Cell Rep	Single-Cell Transcriptional Profiling Reveals Cellular Diversity and Intercommunication in the Mouse Heart	NA
6728	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Plp1, Kcna1"	Schwann cells	Tissue	Heart	32130914	Cell Rep	Dynamic Interstitial Cell Responseduring Myocardial Infarction PredictsResilience to Rupture in Genetically Diverse Mouse	E-MTAB-7895
6729	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79b, Cd19, Ms4a1, Ighd"	B cells	Tissue	Heart	32917889	Nat Commun	Ontogeny of arterial macrophages defines their functions in homeostasis and inflammation	GSE155569
6730	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Trbc2, Thy1, Cd3g, Cd3d, Nkg7"	T cells/Natural killer (NK) cells	Tissue	Heart	32917889	Nat Commun	Ontogeny of arterial macrophages defines their functions in homeostasis and inflammation	GSE155569
6731	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Vcam1	Endothelial cells	Tissue	Heart	32962412	Circulation	Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human	NA
6732	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Col3a1, Fn1, Fsp1, Tnc, Vim"	Fibroblasts	Tissue	Heart	32962412	Circulation	Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human	NA
6733	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Cnn1, Acta2"	Smooth muscle cells	Tissue	Heart	32962412	Circulation	Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human	NA
6734	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Ly6a	Stem cells	Tissue	Heart	32962412	Circulation	Single-Cell Genomics Reveals a Novel Cell State During Smooth Muscle Cell Phenotypic Switching and Potential Therapeutic Targets for Atherosclerosis in Mouse and Human	NA
6735	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Sell, Il7r"	Memory T-cells	Tissue	Heart	29545366	Circ Res	Atlas of the Immune Cell Repertoire in Mouse Atherosclerosis Defined by Single-Cell RNA-Sequencing and Mass Cytometry	GSE21419
6736	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	T cells	Tissue	Heart	30479344	Nat Commun	Macrophage-derived netrin-1 promotes abdominal aortic aneurysm formation by activating MMP3 in vascular smooth muscle cells	GSE118237
6737	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd3d, Lef1, Cd8a"	TC1-Cd8	Tissue	Heart	30912746	eLife	"Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury."	E-MTAB-7376 and E-MTAB-7365.
6738	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Ptprc"	T cells	Tissue	Heart	30943771	Arterioscler Thromb Vasc Biol	Adventitial Cell Atlas of wt (Wild Type) and ApoE (Apolipoprotein E)-Deficient Mouse Defined by Single-Cell RNA Sequencing	NA
6739	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Themis	T cells	Tissue	Heart	31231540	Cell Discov	Single-cell imaging and transcriptomic analyses of endogenous cardiomyocyte dedifferentiation and cycling	GSE129175
6740	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	CD3	T cells	Tissue	Heart	31572976	Nat Metab	Endothelial TGF-beta signalling drives vascular inflammation and atherosclerosis.	GSE134557
6741	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Col18a1, Dlgap1, Mrvi1, Actn1, Map2, Cacnb4, Myh11, Ppp1r12a, Csrp2, Myocd, Klhl29, Cap2, Mylk, Adcy5, Enah, Myom1, Mark1, Ccdc3, Itga8, Kcnab1, Serpini1, Eln, Cald1, Nox4, Ano1, Aff2, Col4a6, Rbpms, Sorbs2, Thsd4, Rbpms2, Kank1, Mamdc2, Lpp, Gucy1a1, Act"	T cells	Tissue	Heart	32013057	Cells	Single-Nucleus Sequencing of an Entire Mammalian Heart: Cell Type Composition and Velocity	E-MTAB-8751
6742	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"H20Eb1, Ighm, H2-Aa, H2-Ab1"	T cells	Tissue	Heart	32384695	Cells	Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mouse	NA
6743	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3g	T cells	Organoids	Heart	32431172	Circulation	Single-Cell RNA Sequencing to Dissect the Immunological Network of Autoimmune Myocarditis	GSE142564
6744	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd3d, Nkg7, Ms4a4b, Trbc2, Trbc1, AW112010, Ccl5, Gzma, Hmgb2"	T cells	Tissue	Heart	32621799	Cell	Type V Collagen in Scar Tissue Regulates the Size of Scar after Heart Injury	GSE152122
6745	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd8a, Lat, Trbc1, Ctla4, Gzmb"	T cells	Tissue	Heart	32674599	Circulation	Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis.	GSE150644
6746	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd4, Cd8b1"	T cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6747	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd4, Cd8b1"	T cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6748	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd4, Cd8b1"	T cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6749	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd4, Cd8b1"	T cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6750	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd4, Cd8b1"	T cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6751	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd4, Cd8b1"	T cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6752	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd4, Cd8b1"	T cells	Tissue	Heart	32689904	Circ Res	Impact of Local Allo-Immunity and Recipient Cells in Transplant Arteriosclerosis	"GSE149452, GSE140812 and GSE140968"
6753	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"kdr, cdh5, cd34"	Endothelial cells	Organoids	Heart	33176168	Cell Stem Cell	Capturing Cardiogenesis in Gastruloids.	GSE158999
6754	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"MAP2, TUJ1"	Classical neuronal cells	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6755	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"RBFOX3, SYN1"	Classical panneuronal cells	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6756	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dentate granule cells (dgc)	"Slc17a7, Nrn1, Nrgn, Fh12, Neurod2"	Dentate granule cells (dgc)	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6757	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Developing inhibitory neuron	NKX2.1	Developing inhibitory neuron	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6758	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dorsal telencephalic	PAX6	Dorsal telencephalic	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6759	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Forebrain	FOXG1	Forebrain	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6760	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	GABA	Neuronal cells	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6761	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mossy cells (mc)	"Slc17a7, Nrn1, Nrgn, Fh12, Neurod2"	Mossy cells (mc)	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6762	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Slc1a3	Astrocytes	Tissue	Hippocampus	29724792	Genome Res	bigSCale:an analytical framework for big-scale single-cell data.	GSE60361
6763	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Grad1	Interneurons	Tissue	Hippocampus	29724792	Genome Res	bigSCale:an analytical framework for big-scale single-cell data.	GSE60361
6764	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Thy1, Mdh1"	Neurons	Tissue	Hippocampus	29724792	Genome Res	bigSCale:an analytical framework for big-scale single-cell data.	GSE60361
6765	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Plp1	Oligodendrocytes	Tissue	Hippocampus	29724792	Genome Res	bigSCale:an analytical framework for big-scale single-cell data.	GSE60361
6766	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gria1	Pyramidal neurons	Tissue	Hippocampus	29724792	Genome Res	bigSCale:an analytical framework for big-scale single-cell data.	GSE60361
6767	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a1, Sst, Grm1, Npy, Ngf"	Hippocamposeptal neurons	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99888
6768	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a2, Sst, Grm1, Pnoc, Reln, Npy"	O-LM cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99889
6769	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a3, Tac1, Satb1, Erbb4, Grm1, Pvalb, Sst_"	Basket cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99890
6770	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a4, Tac1, Satb1, Erbb4, Grm1, Pvalb, Sst, Npy"	Bistratified cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99891
6771	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a5, Tac1, Satb1, Erbb4, Grm1, Pvalb"	Oriens-Bistratified (O-Bi) cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99892
6772	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a6, Pvalb, Satb1, Tac1, Snca, Pthlh, C1ql1"	Axo-axonic cells in isocortex	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99893
6773	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a7, Cacna2d1, Lhx6, Nos, Reln"	MGE-derived neurogliaform cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99894
6774	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a8, Cacna2d1, Lhx6, Nos, Reln_, Vwa5a"	Ivy cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99895
6775	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a9, Cacna2d1, Lhx6, Nos1, Ndnf"	Caudal ganglionic eminence (CGE)-derived neurogliaform cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99896
6776	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a10, Ntng1, Chrm2, Sst, Pvalb"	Trilaminar cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99897
6777	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a11, Ntng1"	Putative radiatum-retrohippocampal neurons that project to the retrosplenial cortex.	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99898
6778	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a12, Cck, Cnr1, Sncg, Trp53i11, Cxcl14, Slc17a8"	Soma-targeting basket cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99899
6779	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a13, Cck, Cnr1, Sncg, Trp53i11, Cxcl14, Calb1, Reln"	Dendrite-targeting cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99900
6780	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a14, Cck, Cnr1, Sncg, Trp53i11, Calb1, Vip, Slc17a8, Sema5a, Calca"	Cck cells of other layers	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99901
6781	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a15, Calb2, Vip_, Penk"	IS-1 cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99902
6782	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a16, Calb2, Vip, Penk"	IS-2 cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99903
6783	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a17, Calb2, Vip, Penk"	IS-3 cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99904
6784	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Slc32a18, Sst, Nos1"	Both backprojection cells and PENK-positive projection cells	Tissue	Hippocampus	29912866	PLoS Biol	Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics	GSE99905
6785	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	Cd9	Glial cells	Tissue	Hippocampus	29724792	Genome Res	bigSCale:an analytical framework for big-scale single-cell data.	GSE60361
6786	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Slc1a3, Gfap, Aldoc, Glul"	Astrocytes	Tissue	Hippocampus	32341542	Nat Neurosci	Bidirectional perisomatic inhibitory plasticity of a Fos neuronal network	GSE143758
6787	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"GFAP, APOE, AQP4, SLC1A2"	Astrocytes	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6788	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"TBR1, vGlut1"	Excitatory neurons	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6789	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"NEUROD6, SLC17A7"	Excitatory neurons	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6790	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"DLX1, GAD1"	Inhibitory neurons	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6791	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"RBFOX3, SYN1, SYT1, NRXN3, SNAP25"	Neurons	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6792	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	TBR1	Cortical neuron	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6793	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	vGlut1	Excitatory neuron	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6794	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"FEZF2, BCL11B, CTIP2"	Deeper-layer cortical	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6795	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	SATB2	Upper-layer marker	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6796	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	PROX1	Hippocampal granule cell	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6797	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"PLP1, MBP"	Oligodendrocytes	Tissue	Hippocampus	32726626	Cell Rep	In Vivo Chimeric Alzheimer Disease Modeling of Apolipoprotein E4 Toxicity in Human Neurons	GSE152867
6798	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Slc17a7, Nrn1, Nrgn, Fh12, Neurod2"	Astrocytes	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6799	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Slc17a7, Nrn1, Nrgn, Fh12, Neurod2"	Excitatory neurons	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6800	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Gad2, Kcnip1, Erbb4, Rbms3, Kcnmb2"	Inhibitory neurons	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6801	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Slc17a7, Nrn1, Nrgn, Fh12, Neurod2"	Oligodendrocyte precursors	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6802	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Slc17a7, Nrn1, Nrgn, Fh12, Neurod2"	Oligodendrocytes	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6803	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Slc17a7, Nrn1, Nrgn, Fh12, Neurod2"	Pyramidal neurons	Tissue	Hippocampus	33084572	eLife	"Developmental, cellular, and behavioral phenotypes in a Mouse model of congenital hypoplasia of the dentate gyrus"	GSE157983.
6804	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Slc17a7, Fibcd1, Pex5l"	Dorsal CA1 excitatory Neurons	Tissue	Hippocampus	33299180	Nature	RUNX1 and CBFbeta-SMMHC transactivate target genes together in abnormal myeloid progenitors for leukemia development	GSE158843
6805	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular cells	Itm2a	Vascular cells	Tissue	Hippocampus	29724792	Genome Res	bigSCale:an analytical framework for big-scale single-cell data.	GSE60361
6806	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Embryonic hypothalamus cells	"Gap43, Cldn5, S100a1, Zbtb20, Rgs5, Hba-a1, Ndufa4l2, Fabp7, Ptprz1, Plac8, Igfbp7, Malat1"	Embryonic hypothalamus cells	Tissue	Hypothalamus	31469823	PLoS Computational Biology	An iterative clustering method for single-cell RNA sequencing data	GSE45719
6807	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Olig2	Oligodendrocytes	Tissue	Hypothalamus	32868762	Nat Commun	The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development	GSE132355
6808	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tanycytes	Rax	Tanycytes	Tissue	Hypothalamus	30941008	Front Neurosci	Tanycyte-Independent Control of Hypothalamic Leptin Signaling	GSE93374
6809	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tanycytes	Rax	Tanycytes	Tissue	Hypothalamus	32868762	Nat Commun	The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development	GSE132355
6810	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	Foxj1	Ependymal cells	Tissue	Hypothalamus	30941008	Front Neurosci	Tanycyte-Independent Control of Hypothalamic Leptin Signaling	GSE93374
6811	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	Foxj1	Ependymal cells	Tissue	Hypothalamus	32868762	Nat Commun	The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development	GSE132355
6812	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Ntsr2	Astrocytes	Tissue	Hypothalamus	30941008	Front Neurosci	Tanycyte-Independent Control of Hypothalamic Leptin Signaling	GSE93374
6813	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Cx3cr1	Microglia cells	Tissue	Hypothalamus	30941008	Front Neurosci	Tanycyte-Independent Control of Hypothalamic Leptin Signaling	GSE93374
6814	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Olig2	Oligodendrocytes	Tissue	Hypothalamus	30941008	Front Neurosci	Tanycyte-Independent Control of Hypothalamic Leptin Signaling	GSE93374
6815	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Esr1	Glutamatergic neurons	Tissue	Hypothalamus	31626771	Cell	Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior	NA
6816	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Esr1	Glutamatergic neurons	Tissue	Hypothalamus	31626771	Cell	Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior	NA
6817	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Esr1	Glutamatergic neurons	Tissue	Hypothalamus	31626771	Cell	Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior	NA
6818	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	NA	Hematopoietic stem cells	Tissue	Hypothalamus	31628891	J Thromb Haemost	Role of thrombomodulin expression on hematopoietic stem cells	pending
6819	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Stmn3	Neuronal cells	Tissue	Hypothalamus	30941008	Front Neurosci	Tanycyte-Independent Control of Hypothalamic Leptin Signaling	GSE93374
6820	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Gfap	Astrocytes	Tissue	Hypothalamus	32868762	Nat Commun	The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development	GSE132355
6821	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc321	Gabaergic neurons	Tissue	Hypothalamus	32868762	Nat Commun	The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development	GSE132355
6822	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a6	Glutamatergic neurons	Tissue	Hypothalamus	32868762	Nat Commun	The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development	GSE132355
6823	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Agt, Rgcc"	Mature astrocytes	Tissue	Hypothalamus	32868762	Nat Commun	The cellular and molecular landscape of hypothalamic patterning and differentiation from embryonic to late postnatal development	GSE132355
6824	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Il1rl1, Gata3, Klrg1, Il4, Il5, Il13, Areg"	Innate lymphoid cells (ILCs)	Tissue	Ileum	32814028	Immunity	Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine.	GSE151152
6825	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	Mmp7	Paneth cells	Tissue	Ileum	32814028	Immunity	Paneth Cell-Derived Lysozyme Defines the Composition of Mucolytic Microbiota and the Inflammatory Tone of the Intestine.	GSE151152
6826	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"Plek, Pf4, Gp9, Cd41a"	Megakaryocytes	Cell line	Ilscs	32492433	Cell Rep	Endocrine-Exocrine Signaling Drives Obesity-Associated Pancreatic Ductal Adenocarcinoma.	GSE124992
6827	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Runx2, Gli1"	Runx2+/Gli1+ niche cells	Tissue	Incisor	32783935	Cell Rep	Runx2+ Niche Cells Maintain Incisor Mesenchymal Tissue Homeostasis through IGF Signaling	NA
6828	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amplifying cells	Ki67	Transit-amplifying cells	Tissue	Incisor	32783935	Cell Rep	Runx2+ Niche Cells Maintain Incisor Mesenchymal Tissue Homeostasis through IGF Signaling	NA
6829	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hair cells	Pou4f3	Hair cells	Tissue	Inner cell	32579737	Laryngoscope	Cell Type-Specific Expression Analysis of the Inner Ear A Technical Report	NA
6830	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	EpCAM	Epithelial cells	Tissue	Inner cell	32579737	Laryngoscope	Cell Type-Specific Expression Analysis of the Inner Ear A Technical Report	NA
6831	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"CD326-, CD49f-, CD34-"	Mesenchymal cells	Tissue	Inner cell	32579737	Laryngoscope	Cell Type-Specific Expression Analysis of the Inner Ear A Technical Report	NA
6832	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	CD49f	Neurons	Tissue	Inner cell	32579737	Laryngoscope	Cell Type-Specific Expression Analysis of the Inner Ear A Technical Report	NA
6833	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	CD49f	"Neurons, vascular endothelium and the sensory epithelial cells"	Tissue	Inner cell	32579737	Laryngoscope	Cell Type-Specific Expression Analysis of the Inner Ear A Technical Report	NA
6834	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	CD34	Vascular endothelial cells	Tissue	Inner cell	32579737	Laryngoscope	Cell Type-Specific Expression Analysis of the Inner Ear A Technical Report	NA
6835	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"CD34, CD49f"	Vascular endothelial cells	Tissue	Inner cell	32579737	Laryngoscope	Cell Type-Specific Expression Analysis of the Inner Ear A Technical Report	NA
6836	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	"Lgr5, Olfm4"	Intestinal stem cells	Tissue	Intestine	29950724	Nature	Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche	NA
6837	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	Lgr5	Intestinal stem cells	Organoids	Intestine	31019299	Nature	Self-organization and symmetry breaking in intestinal organoid development	GSE115956
6838	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	R26Ryfp	Intestinal stem cells	Tissue	Intestine	32027840	Mol Cell	Replicational Dilution of H3K27me3 in Mammalian Cells and the Role of Poised Promoters	GSE128671
6839	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	R26Ryfp	Intestinal stem cells	Tissue	Intestine	32027840	Mol Cell	Replicational Dilution of H3K27me3 in Mammalian Cells and the Role of Poised Promoters	GSE128671
6840	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	Cdca7	Intestinal stem cells	Tissue	Intestine	32084390	Cell Stem Cell	Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells	GSE130822
6841	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	Msi1	Intestinal stem cells	Tissue	Intestine	32726617	Cell Rep	Cycling Stem Cells Are Radioresistant and Regenerate the Intestine.	GSE145866
6842	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	"Gkn3, Ascl2, Olfm4, Jun, Pdgfa, 2210407c18Rik"	Intestinal stem cells	Tissue	Intestine	32726617	Cell Rep	Cycling Stem Cells Are Radioresistant and Regenerate the Intestine.	GSE145866
6843	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	"Igfbp, Ascl2"	Intestinal stem cells	Tissue	Intestine	32726617	Cell Rep	Cycling Stem Cells Are Radioresistant and Regenerate the Intestine.	GSE145866
6844	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lo-1 cells	"Cd81, Grem1"	Lo-1 cells	Tissue	Intestine	32084389	Cell Stem Cell	Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient	GSE130681
6845	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lo-2 cells	Sfrp1	Lo-2 cells	Tissue	Intestine	32084389	Cell Stem Cell	Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient	GSE130681
6846	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ly6c2, Ccr2, Hp, Emilin2"	Monocyte-derived cells	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6847	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mural cells	"Vtn, Ptp4a3"	Mural cells	Tissue	Intestine	32796823	Nat Commun	Distinct fibroblast subsets regulate lacteal integrity through YAP/TAZ-induced VEGF-C in intestinal villi	GSE124488
6848	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Ngb, Gsg1l, Col25a1"	Cluster 1	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6849	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Vwa5b1, Sv2b, Oprd1"	Cluster 2	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6850	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Penk, Sncb, Olfm3"	Cluster 3	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6851	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cemip, Kcnip1"	Cluster 4	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6852	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Num, Pcdh10, Cbln2"	Cluster 5	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6853	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Skap1, Nefl, Nxph2"	Cluster 6	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6854	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cdh9, Mgat4c, Klhl1"	Cluster 7	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6855	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	NA	Cluster 8	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6856	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Sst, Galnt5, Pantr1"	Cluster 9	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6857	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Trhde, Bean1, Neurod6"	Cluster 10	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6858	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Myrf, Nkain4, Cldn15"	Cluster 11	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6859	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Col11a1, Tmprss5, Car12"	Cluster 12	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6860	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Pigr, Klf5, Cdh1"	Cluster 13	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6861	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Klhl4, Arap3, Radil"	Cluster 14	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6862	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth - distal	"Defa20, Defa32, Gm15308, Defa22, Defa21, Nupr1"	Paneth - distal	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6863	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth - proximal	"Defa23, Clps, Defa17, Rnase1, Defa-rs1"	Paneth - proximal	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6864	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	"Cdk4, Mcm5, Mcm6, Mki67, Pcna"	Proliferating cells	Organoids	Intestine	31019301	Nature	Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell	GSE123516
6865	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Slc12a2, Olfm4"	Proliferating or stem cells	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6866	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Regenerating cells	"Ascl2, Cdca7, Smoc2"	Regenerating uppe rcells	Tissue	Intestine	32084390	Cell Stem Cell	Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells	GSE130822
6867	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cell	"Stmn1, Hells, Tuba1b, Rrm2"	Singly profiled stem cell	Organoids	Intestine	31019301	Nature	Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell	GSE123516
6868	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cell	"Clu, Anxa1, Basp1, Cxadr"	Singly profiled stem cell	Organoids	Intestine	31019301	Nature	Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell	GSE123516
6869	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Surface cells	"Cd68, Iba1, Cd11b, Ptprc"	Surface cells	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6870	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ta	"Hmgb2, Ube2c, Top2a, Birc5, Mki67"	TA	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6871	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ta cells	CDKN2A	Ta cells	Tissue	Intestine	32027840	Mol Cell	Replicational Dilution of H3K27me3 in Mammalian Cells and the Role of Poised Promoters	GSE128671
6872	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ta cells	CDKN2A	Ta cells	Tissue	Intestine	32027840	Mol Cell	Replicational Dilution of H3K27me3 in Mammalian Cells and the Role of Poised Promoters	GSE128671
6873	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Telocytes	"Pdgfra, Bmp5, Bmp7, Bmp3"	Telocytes	Tissue	Intestine	32084389	Cell Stem Cell	Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient	GSE130681
6874	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Trans colo	"Bmi1, Clu"	Trans colo	Tissue	Intestine	32084390	Cell Stem Cell	Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells	GSE130822
6875	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	"Lrmp, Alox5ap, Dclk1, Ltc4s, Cd24a"	Tuft cells	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6876	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Mycn, Cd24a, Fez1, Gja1, Hm2a, Kif21a, Ly6h, Psip1, Slc22a17, Sox11, Tubb2b"	Atypical teratoid/rhabdoid tumors-SHH cell	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6877	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Anxa2, Arid5b, Bmp4, Ccdc80, Dcn, Hmox1, Ly6d, Ogn, Sfn, Tfpi"	Atypical teratoid/rhabdoid tumors-MYC cell	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6878	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Bmi1, mTert, Hopx"	Neural cells c4	Tissue	Intestine	32726617	Cell Rep	Cycling Stem Cells Are Radioresistant and Regenerate the Intestine.	GSE145866
6879	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Crypt cells	Ly6a	Crypt cells	Tissue	Intestine	29950724	Nature	Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche	NA
6880	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	MUC2	Goblet cells	Tissue	Intestine	29950724	Nature	Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche	NA
6881	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	MMP7	Paneth cells	Tissue	Intestine	29950724	Nature	Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche	NA
6882	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Colonocytes	"Fabp2, Car1"	Colonocytes	Tissue	Intestine	32084390	Cell Stem Cell	Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells	GSE130822
6883	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Columnar cells	"Lgr5, Axin2, Ascl2"	Crypt-base columnar cells	Organoids	Intestine	31019301	Nature	Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell	GSE123516
6884	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	Mttp	Enterocyte immature	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6885	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Agr2, Retnlb"	Enterocyte immature proximal	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6886	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Vil1, Myo1a"	Enterocyte mature	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6887	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	Mttp	Enterocyte mature	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6888	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Fabp6, Tmigd1"	Enterocyte mature distal	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6889	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Apoa4, Fabp2"	Enterocyte mature proximal	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6890	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	Apoc3	Enterocytes	Organoids	Intestine	31019299	Nature	Self-organization and symmetry breaking in intestinal organoid development	GSE115956
6891	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	Sst	Enteroendocrine cells	Organoids	Intestine	31019299	Nature	Self-organization and symmetry breaking in intestinal organoid development	GSE115956
6892	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	Muc2	Goblet cells	Organoids	Intestine	31019299	Nature	Self-organization and symmetry breaking in intestinal organoid development	GSE115956
6893	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	Lyz1	Paneth cells	Organoids	Intestine	31019299	Nature	Self-organization and symmetry breaking in intestinal organoid development	GSE115956
6894	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Olfm4	Stem cells	Organoids	Intestine	31019299	Nature	Self-organization and symmetry breaking in intestinal organoid development	GSE115956
6895	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Vil1, Krt20, Cldn7, Cdh1"	Epithelial cells	Organoids	Intestine	31019301	Nature	Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell	GSE123516
6896	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Cd3e, Cd3g"	Lymphocyte cells	Organoids	Intestine	31019301	Nature	Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell	GSE123516
6897	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Reg3b, Apoa1, Fabp6, Reg3g, Mep1b"	Enterocyte cells	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6898	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Chgb, Cck, Sct, Gip, Neurod1"	Enteroendocrine cells	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6899	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	NA	Goblet cells	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6900	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	NA	Goblet cells	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6901	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	NA	Goblet cells	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6902	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Clca4, Amica1, Pdgfa, Kcne3, Hes1"	Stem cells	Tissue	Intestine	31442404	Cell	Ketone body signaling mediates intestinal stem cell homeostasis and adaptation to diet	GSE112205
6903	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ms4a7, Tgfbi, Cd74, H2-Aa, Cd68"	Macrophages	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6904	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Cldn4, Spint2"	Epithelial cells	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6905	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Lyz2, Ms4a7, Apoe"	Immune cells	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6906	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Cd44, Twist1, Vim, Anxa2, Col1a2"	Mesenchymal cells	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6907	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"P2ry12, Siglech, Gpr34, Fcrls, TMEM119, CD33, GPR34, TREM2, CSF1R, MEF2C, SALL1, SALL3, CD68"	Microglia cells	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6908	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Cd68	Monocytes/macrophages	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6909	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Slc12a2, Tubb5"	Stem cells	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6910	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	Rac2	Tuft cells	Tissue	Intestine	31900405	Mucosal Immunol	Single-cell RNA sequencing analysis reveals alginate oligosaccharides preventing chemotherapy-induced mucositis	GSE131630
6911	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Tff3, Muc2"	Goblet cells	Tissue	Intestine	32084390	Cell Stem Cell	Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells	GSE130822
6912	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Emb, Mcm6, Ccne1"	SP LysoDCs in G1/S	Cell line	Intestine	32268097	Cell Rep	"Differentiation Paths of Peyer Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming"	GSE141776
6913	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Emb, Cenpa, Ccnb2"	SP LysoDCs in G2/M	Cell line	Intestine	32268097	Cell Rep	"Differentiation Paths of Peyer Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming"	GSE141776
6914	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Emb	SP LysoDCs	Cell line	Intestine	32268097	Cell Rep	"Differentiation Paths of Peyer Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming"	GSE141776
6915	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Emb, F11r"	DP LysoDCs	Cell line	Intestine	32268097	Cell Rep	"Differentiation Paths of Peyer Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming"	GSE141776
6916	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Emb, F11r, Cd24a, Plet1, Clec4d"	TP LysoDCs	Cell line	Intestine	32268097	Cell Rep	"Differentiation Paths of Peyer Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming"	GSE141776
6917	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Tspan10	TN LysoDCs	Cell line	Intestine	32268097	Cell Rep	"Differentiation Paths of Peyer Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming"	GSE141776
6918	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rgs5, Pdgfrb"	Pericytes	Tissue	Intestine	31470007	Gastroenterology	Interleukin 1 beta and Matrix Metallopeptidase 3 Contribute to Development of EGFR-dependent Serrated Polyps in Mouse Cecum	NA
6919	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	"Lyz1, Defa17, Gm15284"	Paneth cells	Tissue	Intestine	32726617	Cell Rep	Cycling Stem Cells Are Radioresistant and Regenerate the Intestine.	GSE145866
6920	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Cnn1, Actg2"	Smooth muscle cells	Tissue	Intestine	32796823	Nat Commun	Distinct fibroblast subsets regulate lacteal integrity through YAP/TAZ-induced VEGF-C in intestinal villi	GSE124488
6921	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3g	T cells	Tissue	Intestine	31848709	Acta Neuropathol	Macrophage-tumor cell interaction promotes ATRT progression and chemoresistance	GSE141534
6922	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Elavl4, Snap25, Oprk1, Brinp2, Tmem132c"	Cluster 0	Tissue	Intestine	33010250	Gastroenterology	Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ.	GSE153202
6923	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Alpi, Apoa1, Fabp1, Apoa4"	Enterocytes	Organoids	Intestine	33029001	Nature	Phenotypic landscape of intestinal organoid regeneration	GSE147136
6924	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Chga, Chgb, Tac1, Tph1, Neurog3"	Enteroendocrine cells	Organoids	Intestine	33029001	Nature	Phenotypic landscape of intestinal organoid regeneration	GSE147136
6925	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Muc2, Clca3, Tff3, Agr2"	Goblet cells	Organoids	Intestine	33029001	Nature	Phenotypic landscape of intestinal organoid regeneration	GSE147136
6926	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	"Lyz1, Defa17, Defa22, Defa24, Ang4"	Paneth cells	Organoids	Intestine	33029001	Nature	Phenotypic landscape of intestinal organoid regeneration	GSE147136
6927	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lgr5, Ascl2, Slc12a2, Axin2, Olfm4, Gkn3"	Stem cells	Organoids	Intestine	33029001	Nature	Phenotypic landscape of intestinal organoid regeneration	GSE147136
6928	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	"Dclk1, Trpm5, Gfi1b, Il25"	Tuft cells	Organoids	Intestine	33029001	Nature	Phenotypic landscape of intestinal organoid regeneration	GSE147136
6929	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Exocrine cells	Sox9	Duct cell	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6930	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Exocrine cells	Cpa1	Acinar cell	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6931	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alpha cells	"Gcg, Arx, Cryba2, Mki67, Pcna, Mcm2"	SC-alpha cells	Tissue	Islets	32846125	Cell Rep	Single-Cell Transcriptome Profiling Reveals beta Cell Maturation in Stem Cell-Derived Islets after Transplantation	"GSE151117, GSE139535, GSE114297"
6932	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"Hhex, Rbp4"	Pancreatic delta cells	Tissue	Islets	32220307	Cell Metab	Beta Cell Dedifferentiation Induced by IRE1alpha Deletion Prevents Type 1 Diabetes	GSE144471
6933	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pracreatic beta cells	"MafA, Ucn3, Glut2, Ins1, Ins2"	Pracreatic beta cells	Tissue	Islets	32182217	J Clin Invest	Sel1L-Hrd1 ER-associated degradation maintains β cell identity via TGF-beta signaling	GSE137785
6934	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Beta cells	"Ins1, Ins2"	Beta cells	Tissue	Islets	30799288	Cell Metab	Targeted Elimination of Senescent Beta Cells Prevents Type 1 Diabetes	GSE117770
6935	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Beta cells	"MafA, Ucn3, Slc2a2"	Beta cell maturity	Tissue	Islets	32220307	Cell Metab	Beta Cell Dedifferentiation Induced by IRE1alpha Deletion Prevents Type 1 Diabetes	GSE144471
6936	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Ins2	Beta cell	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6937	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Gcg	Alpha cell	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6938	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Sst	Delta cell	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6939	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Ppy	PP cell	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6940	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Ngn3	Endocrine progenitors	Tissue	Islets	32182217	J Clin Invest	Sel1L-Hrd1 ER-associated degradation maintains β cell identity via TGF-beta signaling	GSE137785
6941	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Islet cells	"Irx2, Ttr"	Islet alpha cells	Tissue	Islets	32220307	Cell Metab	Beta Cell Dedifferentiation Induced by IRE1alpha Deletion Prevents Type 1 Diabetes	GSE144471
6942	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, Cd74"	Macrophages	Tissue	Islets	32304665	Cell	Human lymphoid organ cDC2 and macrophages play complementary roles in T follicular helper responses	GSE137236
6943	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"EpCAM, Krt8, Cldn10"	Epithelial cells	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6944	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Mmp2, Col1a1, Vim"	Mesenchymal cells	Tissue	Islets	32200801	Cell	Long-Term Expansion of Pancreatic Islet Organoids from Resident Procr + Progenitors	OEP000249
6945	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	CD3	T cells	Tissue	Islets	32220307	Cell Metab	Beta Cell Dedifferentiation Induced by IRE1alpha Deletion Prevents Type 1 Diabetes	GSE144471
6946	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bowman capsule	Osr2	Bowman capsule	Tissue	Kidney	33420268	Sci Rep	Single cell RNA sequencing uncovers cellular developmental sequences and novel potential intercellular communications in embryonic kidney	GSE108291
6947	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	C.d.principal	"Frmpd4, Phactr1, Bmpr1b, Kif26b, Egfem1"	C.d.principal	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
6948	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cdica	"Aqp6, Slc4a9"	Cdica	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
6949	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cdicb	"Slc4a9, Slc26a4"	Cdicb	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
6950	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cdpc	"Aqp2, Fxyd4"	Cdpc	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
6951	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	D.c.tubule	"Slc12a3, Trom6, Klhl3, Wnk1, Slc8a1"	D.c.tubule	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
6952	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dct1-2	"Slc12a3, Wnk1"	Dct1-2	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
6953	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule	"Umod, Slc12a3"	Convoluted tubule	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
6954	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule cells	"Kcne1, Scnn1a, Aqp2"	Collecting duct principal cells	Tissue	Kidney	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6955	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule cells	Slc12a1	Distal tubule cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
6956	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule cells	Slc12a1	Distal tubule cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
6957	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule cells	"Slc12a1, Slc12a3, Calb1"	Distal tubule cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129800
6958	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule cells	"Calb1, Slc12a3"	Convoluted tubule cells	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
6959	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule cells	Ncc	Convoluted tubule cells	Tissue	Kidney	33159963	Kidney Int	Targeting fibroblast growth factor 23-responsive pathways uncovers controlling genes in kidney mineral metabolism.	GSE142113
6960	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ecting duct principal cell	"Aqp2, Hsd11b2, Rhbg"	Ecting duct principal cell	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
6961	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glomerular podocytes	Nphs1	Glomerular podocytes	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6962	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Inflammation	"Jak1, Stat3, I16ra"	Inflammation	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
6963	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intercalated cells	Atp6v1g3	Intercalated cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129802
6964	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intercalated cells	Atp6v1g3	Intercalated cells	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6965	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Jga	"Ren1, Slit3"	Jga	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
6966	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	L.henle	"Scl12a1, Erbb4, Sgcz, Ptger3, Egf"	L.henle	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
6967	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Loh collecting duct stalks	Aqp2	Loh collecting duct stalks	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6968	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Loh distal tubules	Slc12a3	Loh distal tubules	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6969	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Limb cells	"Umod, Slc12a1"	Loh thick ascending limb	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6970	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Limb cells	"Aqp1, Slc39a8"	Loh thin descending limb	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6971	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Loh ureteric bud tips	Ret	Loh ureteric bud tips	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6972	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Loop of henle	"Slc12a1, Umod"	Ascending loop of henle	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
6973	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Loop of henle	"Cryab, Abg1"	Loop of henle	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
6974	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Loop of henle	"Umpd, Egf, Slc13a1"	Loop of henle	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
6975	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesangial cells	"Des, Vim, Acta2"	Mesangial cells	Tissue	Kidney	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6976	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesangial cells	"Gsn, Dcn"	Mesangial cells	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
6977	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesangial cells	Nt5e	Mesangial cells	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6978	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Hmgb2, Lubb5, Stmn1"	Cycling	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
6979	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Novel	"Dnm3, Nfat5"	Novel	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
6980	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	P. tubule	"Ghr, Drand1b, Dab2, Cyp7b1, RP24-362L9.2"	P. tubule	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
6981	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Principal cells	"Hsd11b2, Aqp4, Aqp2"	Principal cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129801
6982	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Principal cells	"Scnn1g, Aqp2"	Principle cells of collecting duct in cortex	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
6983	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Principal cells	Aqp2	Principle cells of collecting duct in medulla	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
6984	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	Mki67	Proliferating cells	Tissue	Kidney	33301705	Cell Metab	The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation	GSE156686
6985	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal cells	Vil1	Proximal brush border cells	Tissue	Kidney	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
6986	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Renal corpuscle cells	Cldn1	Renal corpuscle cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129798
6987	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Renin-producing cells	Ren1	Renin-producing cells	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
6988	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	S3 segment of proximal tubule	"Lrp2, Slc16a9"	S3 segment of proximal tubule	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
6989	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Starburst amacrine cells	"Megf10, Sox2, Isl1, Slc18a3"	Starburst amacrine cells	Cell line	Kidney	31812516	Neuron	Binary Fate Choice between Closely Related Interneuronal Types Is Determined by a Fezf1- Dependent Postmitotic Transcriptional Switch	GSE132555
6990	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tal	"Slc12a1, Umod"	Tal	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
6991	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ifng, Nkg7, Ccl4, Ccl5"	T helper 1 effector cells	Tissue	Kidney	32051345	JCI Insight	Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis	"E-MTAB-7957, E-MTAB-7961, and E-MTAB-8002"
6992	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Il17a, Tmem176a, Tmem176b"	T helper 17 cells	Tissue	Kidney	32051345	JCI Insight	Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis	"E-MTAB-7957, E-MTAB-7961, and E-MTAB-8002"
6993	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thin limb of loop of henle cells	"Aqp1, Sptssb"	Thin limb of loop of henle cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129799
6994	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tub epithelial	Slc22a12	Tub epithelial	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
6995	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Type a intercalated cells of collecting duct	Kit	Type a intercalated cells of collecting duct	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
6996	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Type B intercalated cells of collecting duct	Slc26a4	Type B intercalated cells of collecting duct	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
6997	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ureteric bud tip cells	Slco4c	Ureteric bud tip cells	Tissue	Kidney	33420268	Sci Rep	Single cell RNA sequencing uncovers cellular developmental sequences and novel potential intercellular communications in embryonic kidney	GSE108291
6998	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ret, Wnt11, Wnt9b, Gata3"	Ureteric epithelium	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
6999	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ret, Wnt11, Wnt9b, Gata3"	Ureteric epithelium	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7000	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ret, Wnt11, Wnt9b, Gata3"	Ureteric epithelium	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7001	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ret, Wnt11, Wnt9b, Gata3"	Ureteric epithelium	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7002	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ret, Wnt11, Wnt9b, Gata3"	Ureteric epithelium	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7003	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ret, Wnt11, Wnt9b, Gata3"	Ureteric epithelium	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7004	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Urothelium	Upk1b	Urothelium	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7005	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Arterial cells	"Kdr, Cdh5"	Arterial cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129803
7006	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"MEIS1, Gdnf"	Stromal cells	Tissue	Kidney	29183737	Dev Biol	Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf	GSE104396
7007	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Plac8, Cdca3"	Fibroblasts	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
7008	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ptprc, Adgre1, Cx3cr1, Ppt1"	CDC1	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
7009	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ptprc, Adgre1, Sirpa, Cx3cr1"	CDC2	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
7010	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Plvap	Fenestrated endothelial cells	Tissue	Kidney	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7011	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Collecting duct cells	"Tmem213, Sfc26a4, Atp6v1g3"	Collecting duct-3	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7012	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Collecting duct cells	Hsd11b2	Collecting duct-2	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7013	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Collecting duct cells	"Hsd11b2, Agp2"	Collecting duct-1	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7014	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Collecting duct cells	Upk1b	Collecting duct root cells	Tissue	Kidney	33420268	Sci Rep	Single cell RNA sequencing uncovers cellular developmental sequences and novel potential intercellular communications in embryonic kidney	GSE108291
7015	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Cdh16, Mal, Spp1, Spint2"	Distal nephron	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7016	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Cdh16, Mal, Spp1, Spint2"	Distal nephron	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7017	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Slc12a3	Ductal epithelial cells	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7018	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	Wnt4	Early nephrons	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7019	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Nrp1, Kdr"	"Endothelial, vascular, and descending loop of henle"	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
7020	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, B220"	B cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7021	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Snx22, Batf3"	Dendritic cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7022	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Snx22, Batf3"	Dendritic cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7023	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	Il7r	Innate lymphoid cells (ILCs)	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7024	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Gzma	Natural killer (NK) cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7025	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7026	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7027	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Tryobp	Immune cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7028	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Tryobp	Immune cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7029	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Cldn1	Glomerular parietal epithelial cells	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
7030	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Umod, Scnn1a, Slc12a1, Ppp1r1a, Sostdc1"	Kidney loop of henle epithelial cells	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7031	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"C1qa, C1qb"	Macrophages	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
7032	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccr2, Itgam, Plac8, Lyz2, Cebpb"	Infiltrating macrophages	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7033	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccr2, Itgam, Plac8, Lyz2, Cebpb"	Infiltrating macrophages	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7034	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Apoe, Lyz, Ctsb, Trem2, Cx3cr1, Lamp1, Lyz2, Fcgr3"	Inflammatory macrophages	Tissue	Kidney	32051345	JCI Insight	Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis	"E-MTAB-7957, E-MTAB-7961, and E-MTAB-8002"
7035	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, Adgre1, Fyb"	M1 macrophages	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
7036	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	C1qc	Macrophages	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129804
7037	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129806
7038	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Dcn	Fibroblasts	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129807
7039	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Tyrobp	Natural killer (NK) cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129807
7040	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Thy1	T lymphocytes cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129805
7041	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Cnn1	Vascular smooth muscle cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129807
7042	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, Adgre1, Mertk, Stab1"	M2-like macrophages	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
7043	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Axl, Apoe, C1ga"	Macro-1	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7044	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Arf1	Macro-2	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7045	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Itgam	Macrophages	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7046	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"St18, Spi1, Hdac9"	Macrophages	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7047	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd22, Cd19"	B cells	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7048	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Podxl"	Capillary endothelial cells	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7049	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Nkg7	Natural killer (NK) cells	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7050	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Adgre1, Fcgr1, C1qc"	Resident macrophage	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7051	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd14, Cd68, Csf1r, Fcgr4, Cst3"	Resident macrophages	Tissue	Kidney	32051345	JCI Insight	Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis	"E-MTAB-7957, E-MTAB-7961, and E-MTAB-8002"
7052	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ccr7, Lef1, Satb1, Sell"	Naive T cells	Tissue	Kidney	32051345	JCI Insight	Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis	"E-MTAB-7957, E-MTAB-7961, and E-MTAB-8002"
7053	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	SIX2	Nephron progenitors	Tissue	Kidney	29183737	Dev Biol	Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf	GSE104396
7054	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	SIX2	Nephron progenitors	Tissue	Kidney	29183737	Dev Biol	Cross-platform single cell analysis of kidney development shows stromal cells express Gdnf	GSE104396
7055	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Cited1, Six2, Pax2, Meox1"	Nephron progenitors	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7056	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Cited1, Six2, Pax2, Meox1"	Nephron progenitors	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7057	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Rspo3, Cited1, Crym, Six2, Eya1, Spock2"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7058	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Rrm2, Top2a, Hist1h2ap"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7059	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Hist1h2bc, Ccnb2, Cenpa, Hmgb1"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7060	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Hist1h2bc, Fam132a, Frzb, Snap91"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7061	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Notch2, Cbx3, Spry2"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7062	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Rrm2, Top2a, Notch2, Cbx3, Spry2"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7063	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Wnt4, Tmem100, Lhx1, Jag1, Pax8, Pou3f3"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7064	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	"Col3a1, Meg3, Lgals1, Foxd1, Meis1"	Nephron progenitors	Cell line	Kidney	32554463	J Biol Chem	The polycomb proteins EZH1 and EZH2 co-regulate chromatin accessibility and nephron progenitor cell lifespan in Mouse	GSE110925 and GSE144384
7065	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	Six2	Nephron progenitors	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
7066	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nephron	Six1	Nephron progenitors	Tissue	Kidney	33301705	Cell Metab	The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation	GSE156686
7067	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a8, S100a9"	Neutrophils	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
7068	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Lcn2	Neutrophils	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
7069	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ptprc, Lcn2, G0s2, S100a8"	Neutrophils	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
7070	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a9, S100a8, Retnlg"	Neutrophils	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7071	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Ncam1	Parietal epithelial cells	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7072	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Thsd4, Pdgfrb, Myh11"	Pericytes	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7073	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	"Irr8, Siglecn"	Plasmacytoid dentritic cells	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7074	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	"Siglech, Cd300c"	Plasmacytoid dentritic cells	Tissue	Kidney	33301705	Cell Metab	The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation	GSE156686
7075	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	"Nphs1, Nphs2"	Podocytes	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
7076	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	"Podxl, Wt1, Mme"	Podocytes	Tissue	Kidney	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7077	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	"Mafb, Nphs1"	Podocytes	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7078	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	"Mafb, Nphs1"	Podocytes	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7079	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	Nphs2	Podocytes	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7080	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	"Nphs1, Nphs2"	Podocytes	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7081	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	Slc3a1	Podocytes	Tissue	Kidney	33301705	Cell Metab	The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation	GSE156686
7082	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Podocytes	"Nphs1, Nphs2"	Podocytes	Tissue	Kidney	33420268	Sci Rep	Single cell RNA sequencing uncovers cellular developmental sequences and novel potential intercellular communications in embryonic kidney	GSE108291
7083	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Flt1, Eln"	Endothelial cells	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7084	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Pdgfrb	Fibroblasts	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7085	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Slc27a2, Lrp2"	Proximal tubular cells	Tissue	Kidney	29622724	Science	Single-cell transcriptomics of the Mouse kidney reveals potential cellular targets of kidney disease	NA
7086	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Spp2, Lrp2"	Proximal tubular cells	Tissue	Kidney	31689386	Dev Cell	"Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney"	GSE129798
7087	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Gatm, Spp2, Gpx3, Cyr61, Lmo3, Zbtb20, Mox, Aldob, Ass1"	Proximal tubule5	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7088	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Gatm, Spp2, Gpx3, Mox, Aldob, Ass1"	Proximal tubule4	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7089	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Gatm, Spp2, Gpx3, Cyr61, Lmo3, Zbtb20, Mox, Aldob, Ass1"	Proximal tubule3	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7090	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Gatm, Spp2, Gpx3, Mox, Aldob, Ass1"	Proximal tubule2	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7091	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Acy3, Naosa, Kap"	Proximal tubule1	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7092	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	Npt2a	Proximal tubular cells	Tissue	Kidney	33159963	Kidney Int	Targeting fibroblast growth factor 23-responsive pathways uncovers controlling genes in kidney mineral metabolism.	GSE142113
7093	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Slc22a6, Kap"	Proximal tubular cells	Tissue	Kidney	33420268	Sci Rep	Single cell RNA sequencing uncovers cellular developmental sequences and novel potential intercellular communications in embryonic kidney	GSE108291
7094	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Fbp1, Pck1"	Proximal tubular cells	Tissue	Kidney	32694833	Nat Metab	Altered proximal tubular cell glucose metabolism during acute kidney injury is associated with mortality	GSE151167
7095	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Slc27a2, Slc3a1, Slc5a12"	Proximal tubular cells	Tissue	Kidney	33301705	Cell Metab	The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation	GSE156686
7096	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	Slc5a2	Proximal tubular cells 1	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7097	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	Cubn	Proximal tubular cells 3	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7098	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	Pck1	Proximal tubular cells 4	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7099	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Knl1, Prc1"	Proximal tubular cells 5	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7100	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	Slc5a2	Proximal tubules s1 segment	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
7101	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	Slc34a1	Proximal tubules s2 segment	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
7102	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Aqp1, Slc7a13"	Proximal tubules s3 segment	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
7103	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ikzf2, Klrg1, Foxp3, IL2ra"	Regulatory T cells (Treg)	Tissue	Kidney	32051345	JCI Insight	Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis	"E-MTAB-7957, E-MTAB-7961, and E-MTAB-8002"
7104	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Zeb1"	Endothelial cells	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7105	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Adam33, Nos2"	Immune cells	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7106	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Meis1, Ctgf"	Mesenchymal cells	Tissue	Kidney	32673289	JCI Insight	Fluid-electrolyte homeostasis requires histone deacetylase function	GSE148354
7107	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col3a1, Foxd1"	Stromal cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7108	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col3a1, Foxd1"	Stromal cells	Tissue	Kidney	31118232	Development	Single cell analysis of the developing Mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk	GSE108291
7109	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	Foxd1	Stromal progenitors	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
7110	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"lgkc, Cd79a, Ighm"	B cells	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7111	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cst3, Lso1, H2-Aa"	Conventional dendritic cells	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7112	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Emcn, Tm4sf1, Lkpc1"	Endothelial cells	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7113	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cst3, Lso1, H2-Aa, Cybb, Gngt2, Cenbbb, Lyz2, Ifrp3"	Monocytes/macrophages	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7114	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	"Ccl3, ler3, Ccl4"	Mast cells_basophils	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7115	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzma, Klra4"	Natural killer (NK) cells	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7116	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Ltb, Trpc2, Ccf5, Cd30, Nkg7"	T lymphocyte-1	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7117	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Ltb, Trpc2, Ccf5, Cd30"	T lymphocyte-2	Organoids	Kidney	32970632	JCI Insight	Single cell transcriptomics of Mouse kidney transplants reveals a myeloid cell pathway for transplant rejection	GSE157292
7118	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	T cells	Tissue	Kidney	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7119	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd247	T cells	Tissue	Kidney	32571916	Proc Natl Acad Sci U S A	Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.	GSE139107
7120	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Kidney	33197428	Dev Biol	Molecular detection of maturation stages in the developing kidney	GSE149134
7121	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd209a, Cd11b"	DC 11b+	Tissue	Kidney	33301705	Cell Metab	The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation	GSE156686
7122	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd24a, Clec9a"	DC 11b-	Tissue	Kidney	33301705	Cell Metab	The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation	GSE156686
7123	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Acta2, Lta, Umod"	Tubular epithelial cells	Organoids	Kidney	32938648	J Am Soc Nephrol	"Only Hyperuricemia with Crystalluria, but not Asymptomatic Hyperuricemia, Drives Progression of Chronic Kidney Disease"	NA
7124	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Spacrc, Vsig4"	CX3CR1+ lining marcophages	Tissue	Knee	31391580	Nature	Locally renewing resident synovial macrophages provide a protective barrier for the joint.	GSE134691
7125	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Early articular chondrocytes	Col22a1	Early articular chondrocytes	Tissue	Knee	31522976	Stem Cell Reports	Lgr5 and Col22a1 Mark Progenitor Cells in the Lineage toward Juvenile Articular Chondrocytes	GSE130919
7126	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Interzones	"Gdf5, Wnt9a"	Interzones	Tissue	Knee	31522976	Stem Cell Reports	Lgr5 and Col22a1 Mark Progenitor Cells in the Lineage toward Juvenile Articular Chondrocytes	GSE130919
7127	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stmn1+ proliferating cells	"Stmn1, Ube2c, Birc5"	STMN1+ proliferating cells	Tissue	Knee	31391580	Nature	Locally renewing resident synovial macrophages provide a protective barrier for the joint.	GSE134691
7128	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Chondrocytes	"Col2a1, Acan, Sox9"	Chondrocytes	Tissue	Knee	31935848	Int J Mol Sci	Global Gene Expression Analysis Identifies Age-Related Differences in Knee Joint Transcriptome during the Development of Post-Traumatic Osteoarthritis in Mouse.	NA
7129	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Lgr5	Highly proliferative progenitor cells	Tissue	Knee	31522976	Stem Cell Reports	Lgr5 and Col22a1 Mark Progenitor Cells in the Lineage toward Juvenile Articular Chondrocytes	GSE130919
7130	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Aqp1, Fxyd2"	AQP1+ interstitial macrophages	Tissue	Knee	31391580	Nature	Locally renewing resident synovial macrophages provide a protective barrier for the joint.	GSE134691
7131	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"H2-Eb1, H2-Ab1"	MHCII interstitial marcophages	Tissue	Knee	31391580	Nature	Locally renewing resident synovial macrophages provide a protective barrier for the joint.	GSE134691
7132	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Acp5, Ctsk"	ACP5+ osteoclast precursors	Tissue	Knee	31391580	Nature	Locally renewing resident synovial macrophages provide a protective barrier for the joint.	GSE134691
7133	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccl8, Ccl7"	RELM-alpha+ interstitial marcophages	Tissue	Knee	31391580	Nature	Locally renewing resident synovial macrophages provide a protective barrier for the joint.	GSE134691
7134	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Esam, Cav1, Igfbp7, Sparcl1"	Endothelial cells	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7135	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Esam, Cav1"	Endothelial cells	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7136	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Ecad, Epcam, Krt8, Krt18"	Epithelial cells	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7137	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt8, Epcam"	Epithelial cells	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7138	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Hba2, Snca, Alas2"	Erythrocytes	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7139	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Coro1a, Lsp1, Cd52a, Lat"	Lymphocytes/mast cell	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7140	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Coro1a, Lsp1, Cd14, Cd68"	Macrophage/monocytes	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7141	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Coro1a, Fcer1g, Apoe, Cd52, Cd68"	Innate immune cells	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7142	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Ly6a, Mfap5"	Mes1	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7143	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Ly6a, Mfap5, Gap43"	Mes2	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7144	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Ly6a, Mfap5, Ndufa4l2, Sec23a"	Mes3	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7145	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Ly6a, Mfap5, Ckap2"	Mes4	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7146	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vim, Lum, Col1a1, Col3a1, Gap43"	Mesenchymal neural crest cells 1	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7147	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vim, Lum, Col1a1, Col3a1, Gdf10"	Mesenchymal neural crest cells 2	Tissue	Lacrimal gland	28576768	Development	Defining epithelial cell dynamics and lineage relationships in the developing lacrimal gland	GSE10010
7148	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lgr5, Mki67"	Proliferating stem cells	Tissue	Large intestine	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7149	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Chromaffin cells	"Chga, Chgb"	Chromaffin cells	Tissue	Large intestine	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7150	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Krt20, Slc26a3"	Enterocytes	Tissue	Large intestine	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7151	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Atoh1, Spdef"	Goblet cells	Tissue	Large intestine	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7152	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	Dclk1	Tuft cells	Tissue	Large intestine	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7153	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd14, Fcgr3, Csf1r, Adgre1"	Macrophages	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7154	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b"	B cells	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7155	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Vwf"	Endothelial cells	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7156	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Lum, Dcn"	Mesenchymal stromal cells	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7157	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cd14, Fcgr3"	Monocytes	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7158	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzma, Nkg7"	Natural killer (NK) cells	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7159	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Cnn1, Acta2, Tagln"	Smooth muscle cells	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7160	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	"Gypa, Alas2"	Red blood cells	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7161	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd3g, Rora, Gata3"	T cells	Tissue	Large vessels	32166394	Cell Mol Life Sci	Cellular and Molecular Life Sciences	"GSE140811, GSE117963, GSE109774"
7162	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eritrocytes	Hbb-bs	Eritrocytes	Tissue	Left ventricle	31399586	Nat Commun	WWP2 regulates pathological cardiac fibrosis by modulating SMAD2 signaling	GSE133015
7163	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiomyocytes	Ttn	Cardiomyocytes	Tissue	Left ventricle	31399586	Nat Commun	WWP2 regulates pathological cardiac fibrosis by modulating SMAD2 signaling	GSE133015
7164	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Aplnr, Pecam1"	Endothelial cells	Tissue	Left ventricle	31399586	Nat Commun	WWP2 regulates pathological cardiac fibrosis by modulating SMAD2 signaling	GSE133015
7165	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Lum	Fibroblasts	Tissue	Left ventricle	31399586	Nat Commun	WWP2 regulates pathological cardiac fibrosis by modulating SMAD2 signaling	GSE133015
7166	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"Ccr2, Cd163, Ptprc"	Immune cells	Tissue	Left ventricle	31399586	Nat Commun	WWP2 regulates pathological cardiac fibrosis by modulating SMAD2 signaling	GSE133015
7167	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	San	"Hcn4, Isl1, Shox2, Tbx3"	San	Tissue	Limb	31284824	Circ Res	Transcriptomic Profiling of the Developing Cardiac Conduction System at Single-Cell Resolution	GSE132658.
7168	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Fcgr1, Cd33, Cd48"	Hematopoietic cells	Tissue	Limb buds	32386547	Cell	Unblending of Transcriptional Condensates in Human Repeat Expansion Disease.	GSE128818
7169	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myoblasts	"Myod1, Myog, Tnnt2"	Myoblasts	Tissue	Limb buds	32386547	Cell	Unblending of Transcriptional Condensates in Human Repeat Expansion Disease.	GSE128818
7170	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Hbb-bh1, Hbb-bs, Hba-a2"	Erythrocytes	Tissue	Limb buds	32386547	Cell	Unblending of Transcriptional Condensates in Human Repeat Expansion Disease.	GSE128818
7171	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Atxn1	Mesenchymal stem cells	Tissue	Limb muscle	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7172	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Satellite cells	Vcam1	Satellite cells	Tissue	Limb muscle	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7173	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Limb muscle	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7174	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Limb muscle	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7175	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Itgam	Monocytes/macrophages	Tissue	Limb muscle	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7176	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3g	T cells	Tissue	Limb muscle	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7177	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Canonical biliary	"Epcam, Krt7, Krt19, Aqp1, Aqp4, Cldn7"	Canonical biliary	Tissue	Liver	30500539	Cell	Inflammatory Cytokine TNFalpha Promotes the Expansion of Primary Hepatocytes in 3D Culture	"GSM3040892, GSM3040898, GSM3040899"
7178	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Clec4f macs	"Mafb, Fcgr1, Csf1r, Sirpa, Zeb2, H2-Aa"	Clec4f macs	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7179	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dividing cells	Top2a	Dividing cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7180	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrophagocytosis	"Hba-a1, Marco"	Erythrophagocytosis	Organoids	Liver	32663195	J Clin Invest	Hemolysis transforms liver macrophages into antiinflammatory erythrophagocytes	GSE145244
7181	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eythrocytes	"Alas2, Hbb-bt, Hbb-bs, Hba-a2, Hba-a1"	Eythrocytes	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7182	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocyte precursors	AFP	Hepatocyte precursors	Tissue	Liver	33208554	JCI Insight	Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration	"GSE158866 [scRNA-Seq], and GSE158874 [scATAC-Seq]"
7183	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immature cholangiocytes	"Sox9, Hnf1b"	Immature cholangiocytes	Tissue	Liver	33208554	JCI Insight	Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration	"GSE158866 [scRNA-Seq], and GSE158875 [scATAC-Seq]"
7184	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Inflammatory cells	Opn	Inflammatory cells	Tissue	Liver	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
7185	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Insulin cells	Alb	Insulin liver cells	Tissue	Liver	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
7186	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kc3-control	"Cxcl13, Wfdc17, Marco, Ifitm2, Gm10116, Vsig4, Apoc1, Timd4, Fabp7, Cfp, Folr2, Ccl6, Aif1, AW112010, Blvrb, Clec1b, Fcgr4, Ninj1, Cd302, Ctla2b"	Kc3-control	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7187	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kc-h (healthy)	"Cd163, Marco, C6, Hmox1, Fcna, Slc40a1, Sdc3, C4b, Timd4, Tnfaip2, Mrc1, Ptprj, Adgre4, Itgal, BC005537, Vcam1, Cd44, Cxcl13, Paqr9, Atp1b3"	Kc-h (healthy)	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7188	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kc-n (nash)	"Folr2, Cd5l, Ear2, Apoc1, Clec1b, C1qb, Ctsd, Fabp7, Il18bp, Pltp, Aif1, Apoe, Wfdc17, Igf1, Trem2, Clec4n, Lpl, Clec4f, Mmp12, Ccl24"	Kc-n (nash)	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7189	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Cd34	Keratinocyte stem cells	Tissue	Liver	32075962	Nat Commun	Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants	GSE11546
7190	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kn-rm-nash	"Cx3cr1, Ms4a7, Trem2, Cd63, Apoe, H2-Eb1, Cd74, H2-Ab1, H2-Aa, Gpnmb, Hexb, Cd9, Clec4b1, Bcl2a1b, H2-M2, Cxcl14, Pf4, Mmp12, Fabp5, Cd207"	Kn-rm-nash	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7191	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ly6chi-rm	"Chil3, Fn1, S100a4, Hp, F13a1, Gm9733, F10, Emb, Ccr2, S100a6, Mcemp1, Sirpb1c, Ms4a4c, Lyz2, Ly6c2, Coro1a, Ms4a6b, Ccl9, Ifitm6, Plac8"	Ly6chi-rm	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7192	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ly6clo-rm	"Cd209a, Klrd1, S100a4, Flt3, Cbfa2t3, Napsa, S100a6, Lsp1, Cd7, Tppp3, S100a11, Vim, Gm2a, Crip1, H2-Oa, Coro1a, Fxyd5, S100a10, Lgals1, Tagln2"	Ly6clo-rm	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7193	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mig.cdc2s	"H2-Aa, Ccr7"	Mig.cdc2s	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7194	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pdc-control	"Siglech, Cox6a2, Ly6d, Klk1, Cd209d, Cd300c, Smim5, Ccr9, D13Ertd608e, Atp1b1, Klk1b27, Sell, Ly6c2, Rpgrip1, Rnase6, Dnajc7, Tcf4, Lgals1, Bst2, Irf8"	Pdc-control	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7195	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pdc-nash	"Siglech, Ccr9, Atp1b1, Cd300c, Cox6a2, Upb1, Pacsin1, Smim5, Klk1, Sell, Ly6d, Cd209d, Ly6c2, Rnase6, Tsc22d1, Irf8, Dnajc7, Bst2, Lgals1, Plac8"	Pdc-nash	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7196	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pdcs	"Ly6c2, Irf8, Clec10a, Zeb2, Tcf4, Siglech, Cd7"	Pdcs	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7197	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	"Ccna2, Top2a, Mki67, Cdk1, Cenpm"	Proliferating cells	Tissue	Liver	30500539	Cell	Inflammatory Cytokine TNFalpha Promotes the Expansion of Primary Hepatocytes in 3D Culture	"GSM3040892, GSM3040898, GSM3040899"
7198	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Keratinocytes	"Stmn1, Top2a, Ube2c, Birc5, 2810417H13Rik, Ccnb2, Mki67, Cdca3, Lockd, Cdk1, Smc2, Cenpa, Cks2, Cks1b, Hmgb2, H2afx, Hist1h2ap, Smc4, Tubb5, Tuba1b"	Proliferating keratinocytes	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7199	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Keratinocytes	"Mafb, Adgre1, Clec4f, Csf1r, Cd51, Sirpa, Zeb2"	Proliferating keratinocytes	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7200	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stellate cell	"Fcna, Angptl6, Fgf21"	Resting hepatic stellate cell	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7201	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stellate cell	"Fcna, Angptl6, Fgf21"	Resting hepatic stellate cell	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7202	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Retinoblastima cells	"Hbb-bt, Hbb-bs, Hba-a2, Hba-a1, Bpgm, Snca"	Retinoblastima cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7203	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stellate cells	Dcn	Stellate cells	Tissue	Liver	30762896	Hepatology	Tissue Repair in the Mouse Liver Following Acute Carbon Tetrachloride Depends on Injury-Induced Wnt/beta-Catenin Signaling	NA
7204	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stellate cells	"Dcn, Colec11, Ecm1, Cxcl12, Sod3, Angptl6, Rgs5, Reln, Tmem56, Rbp1, G0s2, Rarres2, Acta2, Tagln"	Stellate cells	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7205	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Yap, Gata6"	Bipotent liver progenitors	Tissue	Liver	33208554	JCI Insight	Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration	"GSE158866 [scRNA-Seq], and GSE158873 [scATAC-Seq]"
7206	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Opn	Biliary epithelial cells	Tissue	Liver	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
7207	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Irf8, Itgax, Xcr1, Clec9a, H2-Aa"	CDC1	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7208	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Itgam, H2-Aa, Zeb2"	CDC2	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7209	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cholangiocytes	Sox9	Cholangiocytes	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7210	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cholangiocytes	"Krt7, Krt19, Tff2, Scgb3a1, Fxyd2, Defb1"	Cholangiocytes	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7211	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cholangiocytes	Epcam	Cholangiocytes	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK9 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7212	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Cd74, Cd19"	Circulating B cells	Tissue	Liver	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7213	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Nrp1, Kdr, Oit3"	Endothelial cells	Tissue	Liver	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7214	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Zap70, Il2rb, Nkg7, Cxcr6, Gzma"	Natural killer T (NKT) cells	Tissue	Liver	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7215	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Cd3, Cd4"	CD4 T cells	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7216	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Cd3, Cd8"	CD8 T cells	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7217	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd74, H2-Ab1, Ccl22, Ccl17"	Dendritic cells	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7218	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Csf1r, Itgam"	Monocytes	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7219	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Cd3, Ncr1"	Natural killer (NK) cells	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7220	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Tissue	Liver	30762896	Hepatology	Tissue Repair in the Mouse Liver Following Acute Carbon Tetrachloride Depends on Injury-Induced Wnt/beta-Catenin Signaling	NA
7221	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Siglech	Dendritic cells	Tissue	Liver	30762896	Hepatology	Tissue Repair in the Mouse Liver Following Acute Carbon Tetrachloride Depends on Injury-Induced Wnt/beta-Catenin Signaling	NA
7222	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Liver	30762896	Hepatology	Tissue Repair in the Mouse Liver Following Acute Carbon Tetrachloride Depends on Injury-Induced Wnt/beta-Catenin Signaling	NA
7223	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Klrb1c, Cd3g"	Natural killer T (NKT) cells	Tissue	Liver	30762896	Hepatology	Tissue Repair in the Mouse Liver Following Acute Carbon Tetrachloride Depends on Injury-Induced Wnt/beta-Catenin Signaling	NA
7224	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Nes, Gja1, Cdh1"	Epithelial mesenchymal transition	Tissue	Liver	31514486	Cells	Single-Cell Transcriptomes Reveal Characteristic Features of Mouse Hepatocytes with Liver Cholestatic Injury	NA
7225	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Acta2, Tglna, Col1a1, col3a1, Col6a3"	Activated myofibroblasts  I	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7226	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Slpi, C3, Saa3, Cd74"	Activated myofibroblasts II	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7227	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Ap1, Jund, FosB"	Activated myofibroblasts III	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7228	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Mgp, Fbln1, Gas6"	Activated myofibroblasts IV	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7229	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Acta2, Tglna, Col1a1, col3a1, Col6a3"	Activated myofibroblasts I	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7230	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Slpi, C3, Saa3, Cd74"	Activated myofibroblasts II	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7231	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Ap1, Jund, FosB"	Activated myofibroblasts III	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7232	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"S100a6, Mgp, Fbln1, Gas6"	Activated myofibroblasts IV	Organoids	Liver	31137713	MDPI cells	Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis	NA
7233	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	Dcn	Hepatic stellate cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7234	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	NA	Hepatic stellate cells	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7235	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	NA	Hepatic stellate cells	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7236	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	"Lrrn3, Gja1, Sprn, Inmt, Adm, Robo2, Vcam1, Loxl1, Tsc22d1, Htra3, Sox4, Sectm1a, Adamts5, Slc43a3, Apoc1, Gm13889, Qpct, Lpar1, Podn, Gem, Ackr4, Bmyc, Fcna, Lum, Ano1, Adamtsl2, Rspo3, Spon2"	Hepatic stellate cells	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7237	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	"gfbp3, Sparc, Gcgr, Ndufa4l2, Tnfrsf11b, Tagln, Rgs4, Ttyh1, Clca3a1, Clec4g, Rasl11a, Il34, Tmem178, Col14a1, Heyl, Prss23, Myl9, Tpm2, Lama1, Susd2, Fam84a, Gns, Alpl, Bcr, Pdgfrb, Klhl23, Mest, Ckb, Gpc6, Cyp4b1, Itgb3, Tbx2, Disp2, Serpina3g, Ccl2, Fhl2, Crip1, Rem1, Hilpda, Hsd11b1, Gja4, M"	Hepatic stellate cells	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7238	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	"Col1a1, Col11a2, Acta1, Tagln, Col13a1, Rbp1, Sparc"	Hepatic stellate cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7239	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	"Dcn, Cxcl12, Colec11, Rbp1, Lum, Mmp2, Col1a1, Col1a2, Col3a1, Lrat, Rgs5, Hand2, Reln, Sod3, Ifitm1"	Hepatic stellate cells	Tissue	Liver	32145072	Hepatology	Transcriptional Dynamics of Hepatic Sinusoid-Associated Cells After Liver Injury	NA
7240	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	Lrat	Hepatic stellate cells	Tissue	Liver	32455750	Pharmaceutics	Osteoprotegerin is More than a Possible Serum Marker in Liver Fibrosis: A Study into its Function in Human and Murine Liver	NA
7241	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	Dcn	Hepatic stellate cells	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK7 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7242	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	"Col1a1, Acta2"	Hepatic stellate cells	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7243	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt8, Krt18, Tjp1"	Hepatocyte epithelial cells	Tissue	Liver	30500539	Cell	Inflammatory Cytokine TNFalpha Promotes the Expansion of Primary Hepatocytes in 3D Culture	"GSM3040892, GSM3040898, GSM3040899"
7244	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Alb, Ttr, Apoa1, Serpina1c, Cyp2e1, Glul, Oat, Gulo"	PC hepatocytes	Tissue	Liver	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7245	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Alb, Ttr, Apoa1, Serpina1c, Cyp2f2, Pck1, Hal, Cdh1"	Periportal PP hepatocytes	Tissue	Liver	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7246	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Alb, Ttr, Apoa1, Serpina1c, Ass1, Hamp, Gstp1, Ubb"	Midlobular (ML) hepatocytes	Tissue	Liver	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7247	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Alb, Apoa1, Ttr, Serpina1c, Hnf4a, Fga, Fn1, Rbp4, Glul, Slc1a2"	Hepatocytes	Tissue	Liver	30500539	Cell	Inflammatory Cytokine TNFalpha Promotes the Expansion of Primary Hepatocytes in 3D Culture	"GSM3040892, GSM3040898, GSM3040899"
7248	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Apoc3	Hepatocytes	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7249	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Alb	Hepatocytes	Tissue	Liver	31514486	Cells	Single-Cell Transcriptomes Reveal Characteristic Features of Mouse Hepatocytes with Liver Cholestatic Injury	NA
7250	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Mup3	Hepatocytes	Tissue	Liver	31514486	Cells	Single-Cell Transcriptomes Reveal Characteristic Features of Mouse Hepatocytes with Liver Cholestatic Injury	NA
7251	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Alb	Hepatocytes	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7252	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Apoa1, Apob, Pck1, G6pc, Ttr"	Hepatocytes	Tissue	Liver	31784108	Immunity	Type I Interferon Signaling Disrupts the Hepatic Urea Cycle and Alters Systemic Metabolism to Suppress T Cell Function	"GSE123688,"
7253	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Ambp, Clu, Serpina1c, Ttr, Serpina1a, Serpina1e, Mup7, Rbp4, Serpina1b, Alb, Bhmt, Mup11, Apoc3, Spp1, Serpina3k, Mup3, Fabp1, Mup20, Apoa1, Apoa2"	Hepatocytes	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7254	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Dcn, Apoa2, Ttr, Alb"	Hepatocytes	Organoids	Liver	32663195	J Clin Invest	Hemolysis transforms liver macrophages into antiinflammatory erythrophagocytes	GSE145244
7255	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	"Alb, Ttr, Ambp, Rbp4, Cyp2e1, Spp1"	Hepatocytes	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7256	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Gulo	Hepatocytes 1	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK2 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7257	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Hsd17b13	Hepatocytes 2	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK3 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7258	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Pecr	Hepatocytes 3	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK4 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7259	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Mlxipl	Hepatocytes 4	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK5 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7260	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"NK1.1, NKp46, Eomes"	Natural killer (NK) cells	Tissue	Liver	31393266	eLife	Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells.	GSE124577
7261	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Ebf1	B cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7262	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Irf8	Dendritic cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7263	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Stab2	Endothelial cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7264	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Stab2	Endothelial cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7265	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Stab2	Endothelial cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7266	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Jchain	Plasma cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7267	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Keratinocytes	"Mafb, Adgre1, Clec4f, Csf1r, Cd51, Sirpa, Zeb2, H2-Aa"	Keratinocytes	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7268	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kupffer cells	"Emr1, Clec4f, Cd68, Irf7"	Kupffer cells	Tissue	Liver	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7269	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kupffer cells	"Clec4f, Spic, Marco, Vsig4, Cpvl, Cd163, Cd68"	Kupffer cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7270	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kupffer cells	"Clec4f, Csf1r, C1qc, C1qa, C1qb"	Kupffer cells	Tissue	Liver	31784108	Immunity	Type I Interferon Signaling Disrupts the Hepatic Urea Cycle and Alters Systemic Metabolism to Suppress T Cell Function	"GSE123688,"
7271	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kupffer cells	"Clec4f, Cd68, Adgre1, Ptprc"	Kupffer cells	Organoids	Liver	32663195	J Clin Invest	Hemolysis transforms liver macrophages into antiinflammatory erythrophagocytes	GSE145244
7272	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Leukocytes	Lyz2	Leukocytes	Tissue	Liver	32075962	Nat Commun	Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants	GSE11546
7273	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Leukocytes	Lyz2	Leukocytes	Tissue	Liver	32075962	Nat Commun	Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants	GSE11546
7274	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Liver	31514486	Cells	Single-Cell Transcriptomes Reveal Characteristic Features of Mouse Hepatocytes with Liver Cholestatic Injury	NA
7275	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"S100a11, Ccr2, Itgam, S100a6"	Early recruited macrophages	Organoids	Liver	32663195	J Clin Invest	Hemolysis transforms liver macrophages into antiinflammatory erythrophagocytes	GSE145244
7276	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Epor, Klf1"	Erythroblastic island macrophages	Organoids	Liver	32663195	J Clin Invest	Hemolysis transforms liver macrophages into antiinflammatory erythrophagocytes	GSE145244
7277	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Csf1r, Itgam"	Macrophages	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7278	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Macrophages	Tissue	Liver	30762896	Hepatology	Tissue Repair in the Mouse Liver Following Acute Carbon Tetrachloride Depends on Injury-Induced Wnt/beta-Catenin Signaling	NA
7279	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd74, C1qc, Wfdc17, Cd5l, Lyz2, Vsig4, C1qb, Tyrobp, Clec4f, Cd44, Aif1, Adgre1, Spi1"	Kupffer cell/monocyte_derived macrophages (kc/mdms)	Tissue	Liver	32145072	Hepatology	Transcriptional Dynamics of Hepatic Sinusoid-Associated Cells After Liver Injury	NA
7280	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Kupffer cell/monocyte_derived macrophages (kc/mdms)	Tissue	Liver	32455750	Pharmaceutics	Osteoprotegerin is More than a Possible Serum Marker in Liver Fibrosis: A Study into its Function in Human and Murine Liver	NA
7281	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Csf1r	Macrophages	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7282	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Csf1r	Macrophages	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7283	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Csf1r	Macrophages	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7284	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	NA	Mesenchymal cells	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7285	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	NA	Mesenchymal cells	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7286	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	NA	Mesenchymal cells	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7287	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Abca8a, Ablim1, Ace, Ackr3, Acvrl1, Adamts2, Adcy7, Adk, Aebp1, Aes, Aff3, Ahnak, Ahnak2, Akap12, Ang, Angptl4, Anpep, Anxa5, Arf4, Arrdc3, Aspn, Atf5, Atxn10, B3gnt9, Bicc1, Bmp4, Boc, C1qtnf7, C3, C4b, C7, Camk2n1, Capg, Ccdc80, Cd302, Cd34, Cd63, Cd9, Cdon, Cebpd, Celf2, Ces2g, Cfh, Cgnl1, Cilp"	Fibroblast	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7288	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"1700025G04Rik, A230050P20Rik, Aard, Abcc9, Abcg1, Abi3bp, Ablim2, Acaa2, Acap1, Acsl5, Actn4, Acvr2a, Adamts13, Adamtsl2, Adamtsl4, Adap2, Adap2os, Add3, Adora2a, Adra2b, Afap1l2, Agtr1a, Aldh2, Angptl2, Angptl6, Ank3, Ano1, Anxa2, Apoc1, Apoe, Apold1, App, Arap2, Arhgap24, Arhgap42, Arhgd"	Hepatic stellate cell	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7289	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Abr, Acta2, Actb, Actg2, Actn1, Adcy5, Adcy6, Adcy9, Amigo2, Aoc3, Arhgap1, Arhgef2, Arid5a, Arl4d, Asap2, Asb2, Aspn, Atp1a2, Atp1b2, Atp2a2, Atp2a3, Atp2b4, Atp5a1, Atp5b, Atp5c1, Atp5d, Atp5e, Atp5g3, Atp5h, Atp5j, Atp5j2, Atp5k, Atp5l, Atp6v0e2, Atpif1, AW549542, Axl, B3gnt2, Bcam, Blmh, Bt"	Vascular smooth muscle cell	Tissue	Liver	31722201	Cell Rep	Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis	NA
7290	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Ms4a6c	Macrophages	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK9 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7291	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd38, Igll1, Cd19, Cd79b"	B cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7292	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Ushbp1, Oit3, F8, Bmp2, Mmrn2"	Endothelial cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7293	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd68, Ccr2, Ly6c2, Lyz1, Lyz2"	Monocytes/macrophages	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7294	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Nkg7, Cd3e-"	Natural killer (NK) cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7295	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Cd3e, Nkg7"	Natural killer T (NKT) cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7296	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Lyz2, Apoe, Fn"	Macrophages	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7297	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Kdr, Egflfl7, Igfbp7, Aqp1"	Endothelial cells	Tissue	Liver	31784108	Immunity	Type I Interferon Signaling Disrupts the Hepatic Urea Cycle and Alters Systemic Metabolism to Suppress T Cell Function	"GSE123688,"
7298	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	Krt1	Basal cells	Tissue	Liver	32075962	Nat Commun	Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants	GSE11546
7299	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	Krt1	Basal cells	Tissue	Liver	32075962	Nat Commun	Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants	GSE11546
7300	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Top2a	Stem cells	Tissue	Liver	32075962	Nat Commun	Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants	GSE11546
7301	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Top2a	Stem cells	Tissue	Liver	32075962	Nat Commun	Cellular deconvolution of GTEx tissues powers discovery of disease and cell-type associated regulatory variants	GSE11546
7302	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Retnlg, Lcn2, Mmp9, Hdc, Wfdc21, S100a9, Pglyrp1, Lrg1, S100a8, Mmp8, Mcemp1, Gda, Camp, Ngp, Hp, Slpi, Chil3, S100a11, Anxa1, Ifitm6"	Neutrophils	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7303	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Csf3r, Cd33"	Neutrophils	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7304	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Csf3r	Neutrophils	Tissue	Liver	30762896	Hepatology	Tissue Repair in the Mouse Liver Following Acute Carbon Tetrachloride Depends on Injury-Induced Wnt/beta-Catenin Signaling	NA
7305	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	S100a8	Neutrophils	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7306	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Clec4g, Aqp1, Gpihbp1, Ptprb, Fcgr2b, Kdr, Gpr182, Egf17, Cldn5, Sdpr, Lyve1, Stab2, Nrp1, Pde2a, Stab1"	Liver Endothelial cells (LECs)	Tissue	Liver	32145072	Hepatology	Transcriptional Dynamics of Hepatic Sinusoid-Associated Cells After Liver Injury	NA
7307	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Itgam, Ly6g, S100a8, S100a9, Ly6c2"	Neutrophils	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7308	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Cd11b, Gzma, Prf1, Ncr1, Klra4, Cma1"	Neutrophils	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7309	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Csf1r, Spn, Sirpa, Zeb2"	Pat.monocytes	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7310	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Ly6c2	Monocytes	Tissue	Liver	32346042	Scientific Reports	Adaptable haemodynamic Endothelial cellss for organogenesis and tumorigenesis.	NA
7311	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Ms4a1, Ebf1, Fcmr, Cd19, Cd79b, Mzb1, Ly6d, Siglecg, H2-DMb2, H2-Ob, Ltb, Cd2, Gm43603, Ralgps2, Ptprcap, Cd37, Napsa, Cd24a, Foxp1"	B cells	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7312	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Derl3, Fkbp11, Eaf2, Tnfrsf17, Pou2af1, Gm43291, Mzb1, Jchain, Creld2, Txndc5, Pdia4, Edem1, Slpi, Xbp1, Sec11c, H13, Sdf2l1, Ssr4, Manf, Hsp90b1"	B cells	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7313	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Xcr1, Cd24a, Ifi205, Flt3, Tnni2, Amica1, Naaa, Septin5, H2-Oa, Wdfy4, Cxx1a, Ppt1, Cst3, Plbd1, Tmsb10, Irf8, Lsp1, H2-Aa, H2-Ab1, Gm2a"	DC-1	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7314	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Fscn1, Ccr7, Ccl22, Tbc1d4, Il12b, Il4i1, Traf1, Eno3, Zmynd15, Serpinb6b, Gadd45b, Relb, Rogdi, Tspan3, Ccl5, Bcl2a1d, Tmem123, Gyg, Fabp5, Epsti1"	DC-2	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7315	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Igfbp7, Aqp1, Ptprb, Gpihbp1, Clec4g, Kdr, Ehd3, Eng, Egfl7, Adgrf5, Timp3, Bgn, Bmp2, Il6st, Tinagl1, Sdpr, Fabp4, Rspo3, Fcgr2b, Dnase1l3"	Liver sinusoidal endothelial cells (lsecs)	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7316	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Nkg7, Ms4a4b, Xcl1, Cd3g, Cd3d, Ctsw, Thy1, Gimap3, Lck, Lat, Skap1, Ltb, Klre1, Klrb1c, Gimap4, Ptprcap, Ccl5, Bcl2, Tmsb10, Cd7"	Natural killer T (NKT) cells	Tissue	Liver	32362324	Immunity	Niche-Specific Reprogramming of Epigenetic Landscapes Drives Myeloid Cell Diversity in Nonalcoholic Steatohepatitis	GSE128662
7317	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	Cox6a2	Plasma cells	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK6 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7318	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Ptprb	Liver Endothelial cells	Tissue	Liver	32455750	Pharmaceutics	Osteoprotegerin is More than a Possible Serum Marker in Liver Fibrosis: A Study into its Function in Human and Murine Liver	NA
7319	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Xrc1	Dendritic cells	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK9 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7320	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Clec14a	Endothelial cells	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK9 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7321	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Hbb-bt	Erythrocytes	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK9 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7322	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	Mature B cells	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK8 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7323	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Cd3d, Nkg7"	T cells/Natural killer (NK) cells	Tissue	Liver	32513687	Proc Natl Acad Sci U S A	Hepatocyte-specific TAK1 deficiency drives RIPK9 kinase-dependent inflammation to promote liver fibrosis and hepatocellular carcinoma.	GSE148859 (71).
7324	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3, Cd4, Foxp3"	Regulatory T cells (Treg)	Tissue	Liver	30447042	Cancer science	Immunomodulatory activity of lenvatinib contributes to antitumor activity in the Hepa1-6 hepatocellular carcinoma model	NA
7325	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Sparc, Kdr, F8, Clec4g"	Endothelial cells	Organoids	Liver	32663195	J Clin Invest	Hemolysis transforms liver macrophages into antiinflammatory erythrophagocytes	GSE145244
7326	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD79a, Ms4a1, Cd19, H2-Aa"	B cells	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7327	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7328	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Fcgr1, Csf1r, Ly6c2, Zeb2"	Monocytes	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7329	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, spn, Jrf8"	Natural killer (NK) cells	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7330	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3g	T cells	Tissue	Liver	31398325	Mol Cell	Landscape of Intercellular Crosstalk in Healthy and NASH Liver Revealed by Single-Cell Secretome Gene Analysis	GSE129516
7331	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd4, Cd8a"	T cells	Tissue	Liver	31747600	Cell Rep	Intestinal IL-17R Signaling Constrains IL-18-Driven Liver Inflammation by the Regulation of Microbiome-Derived Products	GSE128284
7332	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	CD8	T cells	Tissue	Liver	32161196	JCI Insight	Differentiated agonistic antibody targeting CD137 eradicates large tumors without hepatotoxicity.	GSE144473
7333	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79b, Cd79a, Ms4a1, Siglecg, Fcmr, Cd19, Fcer2a"	B cells	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7334	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Gpihbp1, Aqp1, Clec4g, Dnase1l3, Fabp4, Ptprb, Kdr, Gpr182"	Endothelial cells	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7335	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Lrg1, Inhbb, Thbd, Bhlhe40"	Endothelial cells	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7336	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd3d, Cd5, Cd28, Nki67, Stmn1, Pclat"	T cells	Tissue	Liver	32888418	Immunity	Osteopontin Expression Identifies a Subset of Recruited Macrophages Distinct from Kupffer Cells in the Fatty Liver	GSE156059
7337	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd3g, Cd3d, Lat, Thy1, Cxcr6, Nkg7, Cd4, Cd8b1, Klra4, Ncr1, Gzmb, Lck, Txk, Ms4a4b, Ccl5"	T cells	Tissue	Liver	33106666	Nat Med	Acute liver failure is regulated by MYC- and microbiome-dependent programs	NA
7338	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"Cd9, Itga2b, Mpl, Pf4, VWF"	Megakaryocytes	Tissue	Liver	33239297	Sci Adv	Epigenetic Regulation of IL-17-Induced Chemokines in Lung Epithelial Cells	GSE160466
7339	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd74, H2-aa, H2-eb1, H2-ab1, Igkc, Cd79b"	B cells	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7340	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	CD4	CD4 T cells	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7341	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	Cd8a	CD8 T cells	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7342	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Icos, Bst2, Siglech, Tcf4, Ctsl"	Dendritic cells	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7343	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Tbet, Cd127, Cd7, Xcl1"	Innate lymphoid cells (ILCs)	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7344	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"S100a9, S100a8, Il1b, Cxcl2"	Natural killer (NK) cells	Tissue	Liver	33391261	Front Immunol	The T Cell Receptor Immune Repertoire Protects the Liver From Reconsitution	CRA003280
7345	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ciliated tracheobronch	Mlf1	Ciliated tracheobronch	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7346	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lysosomal cell	Lamp-1	Lysosomal cell	Organoids	Lung	31481690	Nat Commun	Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the Mouse lung	GSE94135
7347	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	"Wt1, Msln"	Mesothelial cells	Organoids	Lung	30824323	Immunity	Adventitial Stromal Cells Define Group 2 Innate Lymphoid Cell Tissue Niches	GSE125492
7348	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	Wt1	Mesothelial cells	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7349	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	Msin	Mesothelial cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7350	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	Msln	Mesothelial cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7351	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mlecs (murine lung ecs)	"Cd31, Cd34, Cdh5"	Ecs	Tissue	Lung	32128409	Sci Adv	Sirt7Vascular endothelium-targeted gene therapy rejuvenates blood vessels and extends life span in a Hutchinson-Gilford progeria model.	GSE138975
7352	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mlecs (murine lung ecs)	"Cd31, Ly6d, Cd22, Cd81"	B-like	Tissue	Lung	32128409	Sci Adv	Sirt7Vascular endothelium-targeted gene therapy rejuvenates blood vessels and extends life span in a Hutchinson-Gilford progeria model.	GSE138975
7353	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mlecs (murine lung ecs)	"Cd31, Cd3d, Cd3e, Cd28"	T-like	Tissue	Lung	32128409	Sci Adv	Sirt7Vascular endothelium-targeted gene therapy rejuvenates blood vessels and extends life span in a Hutchinson-Gilford progeria model.	GSE138975
7354	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mlecs (murine lung ecs)	"Cd31,Cd14, Cd68, Cd282"	Macrophages-like	Tissue	Lung	32128409	Sci Adv	Sirt7Vascular endothelium-targeted gene therapy rejuvenates blood vessels and extends life span in a Hutchinson-Gilford progeria model.	GSE138975
7355	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Mafb, Mertk, Fcgr1"	Monocyte-derived cells	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7356	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mpp3	"LKS, CD48, CD34"	Mpp3	Tissue	Lung	29328912	Cell	BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis	GSE98600
7357	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mpp4	"LKS, CD48, CD34, Flt3"	Mpp4	Tissue	Lung	29328912	Cell	BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis	GSE98600
7358	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Ctsg, Elane, Mpo"	MPP3.C3	Tissue	Lung	29328912	Cell	BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis	GSE98600
7359	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Sftpc, Lamp3, Lyz2, Abca3, Sftpa1"	ACE2	Tissue	Lung	30913038	JCI Insight	Single-cell RNA sequencing identifies TGF-b as a key regenerative cue following LPS-induced lung injury	GSE113049
7360	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Scgb1a1, Scgb3a1, Scgb3a2"	Club	Tissue	Lung	30913038	JCI Insight	Single-cell RNA sequencing identifies TGF-b as a key regenerative cue following LPS-induced lung injury	GSE113049
7361	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Foxj1, Ccdc39, Ccdc113"	Ciliated	Tissue	Lung	30913038	JCI Insight	Single-cell RNA sequencing identifies TGF-b as a key regenerative cue following LPS-induced lung injury	GSE113049
7362	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nilc2	ST2	Nilc2	Tissue	Lung	31353223	Immunity	Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation	NA
7363	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nilc2	ST2	Nilc2	Tissue	Lung	31353223	Immunity	Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation	NA
7364	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nilc2	ST2	Nilc2	Tissue	Lung	31353223	Immunity	Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation	NA
7365	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pdcs	"Siglech, Tcf4, Ccr9, Bst2"	Pdcs	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7366	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Des	Pericyte-like cells	Tissue	Lung	28886382	Cell	Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung	GSE99714
7367	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plvap ecs	Esm1	Plvap ecs	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7368	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Primary Wharton	"Pf4, Itga2b"	Primary Wharton	Tissue	Lung	29328912	Cell	BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis	GSE98600
7369	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pulmonary ams	"Siglecf, Itgax, Mrc1, Pparg"	Pulmonary ams	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7370	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD3, CD4, ST2"	Activated T helper 2	Tissue	Lung	31353223	Immunity	Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation	NA
7371	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD3, CD4"	T helper	Tissue	Lung	31353223	Immunity	Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation	NA
7372	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Nkx2-1, Ncam1, Cas9, Myc, Uchl1, EGFP, Sox2, Insm1, Neurod1"	Tumor cells	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7373	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Type ii pneumocyte	Pdpn	Type ii pneumocyte	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7374	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Venous cells	Nr2f2	Venous cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7375	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Ager, Pdpn, Cdh1"	Epithelial cells	Tissue	Lung	28886382	Cell	Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung	GSE99714
7376	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Eln, Pdgfra, Col1a1"	Matrix-producing fibroblasts	Tissue	Lung	28886382	Cell	Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung	GSE99714
7377	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	Tagln	Myofibroblasts	Tissue	Lung	28886382	Cell	Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung	GSE99714
7378	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Acta2, Aoc3"	Myofibroblasts	Tissue	Lung	28886382	Cell	Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung	GSE99714
7379	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta2	Smooth muscle cells	Tissue	Lung	28886382	Cell	Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung	GSE99714
7380	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"SM22alpha, alphaSMA"	Smooth muscle cells	Tissue	Lung	28886382	Cell	Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung	GSE99714
7381	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Arterial cells	Gja5	Arterial cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7382	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	AT1 cells	Pdpn	AT1 cells	Tissue	Lung	32989251	Nat Cell Biol	STAT3-BDNF-TrkB signaling promotes alveolar epithelial regeneration after lung injury	GSE132535
7383	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	AT2 cells	Sftpc	AT2 cells	Tissue	Lung	32989251	Nat Cell Biol	STAT3-BDNF-TrkB signaling promotes alveolar epithelial regeneration after lung injury	GSE132535
7384	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Aqp5	ATI cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
7385	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Pax5, Irf4"	Lymphoid tfs	Tissue	Lung	29328912	Cell	BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis	GSE98600
7386	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Lck, Rag1, Rag2"	Lymphoid-lineage	Tissue	Lung	29328912	Cell	BCG Educates Hematopoietic Stem Cells to Generate Protective Innate Immunity against Tuberculosis	GSE98600
7387	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basophils	Mcpt8	Basophils	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7388	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basophils	Cd200r3	Basophils	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7389	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd163l1, Trdv4, Gzma, Cdk6"	Gamma delta T cell	Tissue	Lung	32848068	Proc Natl Acad Sci U S A	beta2 Integrins differentially regulate gammadelta T cell subset thymic development and peripheral maintenance	NA
7390	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Scgb1a1, Scgb3a1, Foxj1, Il33"	Bronchial epithelial cells	Organoids	Lung	32963227	Nat Commun	IL-33-ST2 axis regulates myeloid cell differentiation and activation enabling effective club cell regeneration	GSE155261
7391	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Flt3, Dpp4, Zbtb46, Cd81, Gcsam, Xcr1, Irf8"	Non-migratory cDC1	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 CDCs Acquire Features of CDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7392	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	EpCAM	Epithelial cells	Tissue	Lung	30135312	JCI Insight	CCR10+ epithelial cells from idiopathic pulmonary fibrosis lungs drive remodeling	GSE115982
7393	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ciliated cells	Foxj1	Ciliated cells	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7394	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ciliated cells	Foxj1	Ciliated cells	Organoids	Lung	32963227	Nat Commun	IL-33-ST2 axis regulates myeloid cell differentiation and activation enabling effective club cell regeneration	GSE155261
7395	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ly6c2, Cd62l, Ccr2, Itga4, Cx3cr1"	Circulating monocytes	Tissue	Lung	31744829	Cancer Discov	In Vivo_pigenetic CRISPR Screen Identifies_sf1a_s an Immunotherapeutic Target in_ras-Mutant Lung Adenocarcinoma	NA
7396	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Fcgr1	Classical monocytes	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7397	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Itgax, Cd24a, Cd68"	Dendritic cells	Tissue	Lung	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7398	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Endomucin, CD31"	Endothelial cells	Tissue	Lung	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7399	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Lung	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7400	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Pdgfra, Pdgfrb, Thbs1, syndecan4"	Mesenchymal cells	Tissue	Lung	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7401	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7402	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Siglech	Dendritic cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7403	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Cdh5	Endothelial cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7404	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelium progenitors	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7405	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Akap5"	AT1 cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7406	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Lamp3"	AT2 cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7407	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Scgb3a2"	Club cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7408	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Foxj1"	Ciliated cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7409	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a2, Enpp2"	Mooth muscle cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7410	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a2, Mfap4"	Matrix fibroblasts	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7411	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a2, Gucy1a3"	Pericytes	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7412	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Il7r, Rora"	ILC subset 2	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7413	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	Mcpt4	Mast cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7414	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	F13a1	Monocytes	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7415	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ccl5	Natural killer (NK) cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7416	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Cldn4, AW112010, Tnip3, Mcam"	Damage associated transient progenitors	Tissue	Lung	32750316	Cell Stem Cell	Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration	GSE144468
7417	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ccl17, Cxcl16, Siglech"	Dendritic cells	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7418	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col1a1, Pdgfra, Pdgfrb"	Adventitial stromal cells	Organoids	Lung	30824323	Immunity	Adventitial Stromal Cells Define Group 2 Innate Lymphoid Cell Tissue Niches	GSE125492
7419	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Acta2, Ltbp2, Col1a1"	Fibroblasts	Organoids	Lung	30848683	Am J Respir Cell Mol Biol	Defining the Activated Fibroblast Population in Lung Fibrosis Using Single-Cell Sequencing	GSE129605
7420	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	Acta2	Myofibroblasts	Organoids	Lung	30848683	Am J Respir Cell Mol Biol	Defining the Activated Fibroblast Population in Lung Fibrosis Using Single-Cell Sequencing	GSE129605
7421	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eosinophils	Prg2	Eosinophils	Tissue	Lung	32213713	JCI Insight	Host immunology and rational immunotherapy for carbapenem-resistant Klebsiella pneumoniae infection	NA
7422	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"EpCAM, Pdpn, Cav1, Ager, Hopx, Aqp5"	ACE1	Tissue	Lung	30913038	JCI Insight	Single-cell RNA sequencing identifies TGF-b as a key regenerative cue following LPS-induced lung injury	GSE113049
7423	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt5, Trp63, Krt15"	Basal cells	Tissue	Lung	30913038	JCI Insight	Single-cell RNA sequencing identifies TGF-b as a key regenerative cue following LPS-induced lung injury	GSE113049
7424	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Itga8	Fibroblasts	Tissue	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
7425	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Ptprc, Vav1"	Hematopoietic cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7426	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	"Sftpc, Sftpb, Sftpd"	Alveolar cells	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7427	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	"Hopx, Pdpn, Ager"	Alveolar cells	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7428	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7429	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a1	Fibroblasts	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7430	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Col1a1, Acta2, S100a4;"	Mesenchymal cells	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7431	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Itpr2, Slc31a2"	Neutrophils	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7432	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Itga4, Ly6c2, Ccr2, Cd62l, Cx3cr1"	Inflammatory monocytes	Tissue	Lung	31744829	Cancer Discov	In Vivo_pigenetic CRISPR Screen Identifies_sf1a_s an Immunotherapeutic Target in_ras-Mutant Lung Adenocarcinoma	NA
7433	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Thy, CD127, KLRG1"	Innate lymphoid cells (ILCs)	Tissue	Lung	31353223	Immunity	Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation	NA
7434	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Thy, CD127, KLRG1"	Innate lymphoid cells (ILCs)	Tissue	Lung	31353223	Immunity	Neuropeptide CGRP Limits Group 2 Innate Lymphoid Cell Responses and Constrains Type 2 Inflammation	NA
7435	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, Mrc1, Lyz2, Adgre1, Axl"	Interstitial marcophages	Tissue	Lung	31601718	Eur Respir J	A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages	NA
7436	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79"	B cells	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7437	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Cd115	Monocytes	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7438	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klra4, Klra8"	NK cells	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7439	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Lung	31462798	Nature	Metastatic-niche labelling reveals parenchymal cells with stem features	GEO13150
7440	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ly6c2, Ccr2"	Monocytes	Organoids	Lung	31481690	Nat Commun	Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the Mouse lung	GSE94135
7441	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Leukocytes	Ptprc	Leukocytes	Organoids	Lung	31321669	Sci China Life Sci	Single-cell RNA sequencing profiling of the effects of aging on alveolar stem cells	NA
7442	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgax, Cd206, Retnla, Arg1, Chil3"	Alternatively activated macrophages	Organoids	Lung	32963227	Nat Commun	IL-33-ST2 axis regulates myeloid cell differentiation and activation enabling effective club cell regeneration	GSE155261
7443	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Siglecf	Alveolar macrophage	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7444	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ly6c2, Cx3cr1, Cd14, Csf1r, Mrc1, Marco, Itgax, Mrc1"	Alveolar macrophages	Tissue	Lung	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7445	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Lung	31604686	Immunity	Calcitonin Gene-Related Peptide Negatively Regulates Alarmin-Driven Type 2 Innate Lymphoid Cell Responses	GSE102299
7446	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Lung	31604686	Immunity	Calcitonin Gene-Related Peptide Negatively Regulates Alarmin-Driven Type 2 Innate Lymphoid Cell Responses	GSE102299
7447	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ly6c2, Cx3cr1, Cd14, Csf1r, Mrc1, Csf1r, MHCII"	Interstitial macrophages	Tissue	Lung	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
7448	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	IL-10	Lung interstitial macrophages	Organoids	Lung	31481690	Nat Commun	Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the Mouse lung	GSE94135
7449	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"MerTK, CD64"	Lung resident macrophages	Tissue	Lung	32220976	Sci Immunol	"Identification of a nerve-associated, lung-resident interstitial macrophage subset with distinct localization and immunoregulatory properties"	GSE146682
7450	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Cd86, Cd80, Ccl2, Il12, Il16"	M1 macrophages	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7451	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Nos2	M1-like macrophage cluster 1	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7452	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"H2.Aa, H2.Ab1, H2.DMb1, H2.Eb1, Aif1, Tmem176a, Tmem176b, Cd86, Ass1, Cxcl9"	M1 macrophages	Tissue	Lung	31744829	Cancer Discov	In Vivo_pigenetic CRISPR Screen Identifies_sf1a_s an Immunotherapeutic Target in_ras-Mutant Lung Adenocarcinoma	NA
7453	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	CD68	Macrophages	Organoids	Lung	31481690	Nat Commun	Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the Mouse lung	GSE94135
7454	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Arg1, Thbs1, Fn1, Cd206"	M2-like macrophages	Tissue	Lung	31744829	Cancer Discov	In Vivo_pigenetic CRISPR Screen Identifies_sf1a_s an Immunotherapeutic Target in_ras-Mutant Lung Adenocarcinoma	NA
7455	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Mrc1	M2-like tissue macrophage cluster 2	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7456	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	S100a9	Macrophages	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7457	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Pf4, Cd11b, Aif1, Trem2"	Macrophages	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7458	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cx3cr1, C1qa, C1qb"	Macrophage I cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7459	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccr2, F13a1, Il1b, Il1rn, Lpl, Pparg, Clec7a"	Macrophage II	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7460	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Pparg, Fabp4, Fabp5, Il1rn, Car4, Lpl, Clec7a, Itgax"	Macrophage III	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7461	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgax, Siglecf, Cd68, Ccr2"	Macrophages	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7462	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccl17, Ccr5, Mafb, C1qb, Cd86, Gpnmb, Spp1, Cd68, Alox15, Saa3, Prg4, Serpinb2, Krt79, Chil3, Car4, Krt19, Marco, Adgre1"	Macrophages	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7463	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd22, Cd19"	B cells	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7464	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7465	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, Adgre1"	Macrophages	Tissue	Lung	32855420	Nat Commun	Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages	GSE141733
7466	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrb1c, Nkg7"	Natural killer (NK) cells	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7467	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Siglecf, Cd11c"	Alveolar macrophages	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7468	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ear1, Fabp1"	Alveolar macrophages1	Tissue	Lung	31601718	Eur Respir J	A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages	NA
7469	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Car4, Ctsk, Chil3, S100A1, Wfdc21"	Alveolar macrophages2	Tissue	Lung	31601718	Eur Respir J	A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages	NA
7470	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Pparg, Car4, Ear1, Siglecf , Marco"	Alveolar macrophages3	Tissue	Lung	31601718	Eur Respir J	A spatially restricted fibrotic niche in pulmonary fibrosis is sustained by M-CSF/M-CSFR signalling in monocyte-derived alveolar macrophages	NA
7471	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mrc1, Itgax"	Alveolar marcophages	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7472	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Ccr7, Lef1"	Naive and central memory T cells	Tissue	Lung	31801068	Cell Rep	IL-33 Signaling Alters Regulatory T Cell Diversity in Support of Tumor Development	GSE139232
7473	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Junb, Nr4a1"	T cell activation	Tissue	Lung	31801068	Cell Rep	IL-33 Signaling Alters Regulatory T Cell Diversity in Support of Tumor Development	GSE139232
7474	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"TM4SF1, ENG, ADGRL3, TCF4, EPAS1, CLEC14A, TMEM100, ACER2, LDB2, BMPR2, PLVAP, VWF, CLDN5, CDH5, LRG1, TC2N, AQP1, ABI3BP, RELN, CCL21, PPFIBP1, GNG11, MMRN1, KDR, PRX, CA4, EDNRB, ICAM2, SLCO2A1, KITLG, TMEM47, KIF26B, APLN, FLT1"	Endothelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
7475	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"DCLK1, SOX9, RGS13, AVIL, POU2F3, LTC4S, SH2D6, PLCG2, SCGB3A1, BPIFB1, TFF3, LYPD2, ALDH1A1, AGR2, SCGB3A2, TPPP3, DNAH9, FAM183A, DNAH11, DYNLRB2, CCDC113, FOXJ1, TMEM212, KRT5, KRT14, KRT15, TP63, S100A2, ABCA3, CXCL17, NPW, SFTPD, S100G, SFTPA1, SFTPB"	Epithelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
7476	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"CD3G, CD3E, CD8A, KLRD1, NKG7, S100A8, S100A9, CD68, CD14, TPSB2, IL1RL1, C1QB, PF4, MRC1, NAAA, IL18, GATA3, CCL17, CD86, JCHAIN, CD79A, BANK1, MS4A1, EBF1"	Immune cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
7477	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"IFITM3, TAGLN, LTBP1, PPP1R14A, DCN, LGALS1, ACTA2, MYH11, TRPC6, PDE5A, ARHGAP42, COX4I2, PDZD2, SOX5, GUCY1A1, UPK1B, NKAIN4, MSLN, IGFBP5, IGFBP6, C4B, GPM6A, COL1A2, COL14A1, GPC3, COL1A1, COL3A1, ELN, MGP, MACF1, GSN, Hsd11b1, COL13A1, FHL1, GPX3, PL"	Mesenchymal cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
7478	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7479	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	Cd3d	Innate lymphoid cells (ILCs)	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7480	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	S100a9	Monocytes	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7481	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7482	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	Sparc	Stromal cells	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7483	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Phagocytes	"Cd14, Ctsb, Irf8, Klf4"	Mononuclear phagocytes	Organoids	Lung	31481690	Nat Commun	Non-classical tissue monocytes and two functionally distinct populations of interstitial macrophages populate the Mouse lung	GSE94135
7484	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	ICAM2	Endothelial cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7485	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	ECAD	Epithelial cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7486	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	CD45	Immune cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7487	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	SMA	Myofibroblasts	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7488	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	ERG	Nuclear endothelial cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7489	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Hes1, Flt1"	Stalk endothelial cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7490	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Esm1, Dll4"	Tip endothelial cells	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7491	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Gpihbp1, Plvap, Sox17"	MiEC 1	Tissue	Lung	32091393	eLife	Defining the role of pulmonary Endothelial cells heterogeneity in the response to acute lung injury.	GSE128944
7492	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Gbp2, Ifi47, Eif3m"	MiEC 2	Tissue	Lung	32091393	eLife	Defining the role of pulmonary Endothelial cells heterogeneity in the response to acute lung injury.	GSE128944
7493	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Ednrb, Car4, Cd34"	Car4-high ECs	Tissue	Lung	32091393	eLife	Defining the role of pulmonary Endothelial cells heterogeneity in the response to acute lung injury.	GSE128944
7494	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Hn1, Iigp1, Irf1"	MiEC3	Tissue	Lung	32091393	eLife	Defining the role of pulmonary Endothelial cells heterogeneity in the response to acute lung injury.	GSE128944
7495	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Lrg1, Vcam1, Vwf"	MaECs	Tissue	Lung	32091393	eLife	Defining the role of pulmonary Endothelial cells heterogeneity in the response to acute lung injury.	GSE128944
7496	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd19"	B cells	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7497	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Il1a, Il1b, Ccl3, Ccl4, Cxcl10"	C13 granulocytes	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7498	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Cd11b, Ly6g, S100a8, S100a9, IL1b, Csf3r"	C14 granulocytes	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7499	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd209a, Cd209b, Siglech, Cd300c, Cd74"	Dendritic cells	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7500	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7501	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"Hbb-bs, Hba-a1, Hba-a2"	Erythrocytes	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7502	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	NA	Innate lymphoid cells (ILCs)	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7503	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ccr2, Cd300e, Cd163, Ccl24"	Monocytes	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7504	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Ccr2, Ly6C, Cd11b"	Monocytes/macrophages	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7505	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Cxcr2, Retnlg"	Neutrophils	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7506	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Retnlg	Neutrophils	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7507	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"CD45, S100a8, S100a9, Csf3r"	Neutrophils	Cell line	Lung	31591573	Nat Immunol	Locally instructed CXCR4 neutrophils trigger environment-driven allergic asthma through the release of neutrophil extracellular traps.	NA
7508	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Ly6G	Neutrophils	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7509	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a9, S100a8, Mmp9, Csf3r, Mmp8, Il1rn, Cxcr2, Ly6g, Itgam, Adgre1, Siglecf, Mpo"	Neutrophils	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7510	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Ly6g	Neutrophils	Tissue	Lung	32855420	Nat Commun	Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages	GSE141733
7511	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Cxcr2, S100a9"	Neutrophils	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7512	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7513	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd86, Itgae"	Dendritic cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7514	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Tek"	Endothelial cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7515	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Cdh1"	Epithelial cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7516	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Pdgfra, Tcf21, Cdh11"	Mesenchymal cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7517	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Nkg7, Gzmb"	Natural killer (NK) cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7518	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	CSPG4	Pericytes	Tissue	Lung	32059772	Dev Cell	Epithelial Vegfa Specifies a Distinct Endothelial Population in the Mouse Lung	GSE124325
7519	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Pdgfrb	Pericytes	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7520	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Sirpa, S100a4, CD209a"	Non-migratory cDC2s	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7521	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ccr7, Nudt17, Cd81, Gcsam, Laptmb4, Ncoa7"	Migratory cDC1s	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7522	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ccr7, Nudt17, S100a4, Anxa3, Cdc42ep3"	Migratory cDC2s	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7523	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Mki67, Stmn1"	Proliferating DC	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7524	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Fcgr1, Irf8, Irf4"	Inf-cDC2s	Tissue	Lung	32392463	Immunity	Inflammatory Type 2 cDCs Acquire Features of cDC1s and Macrophages to Orchestrate Immunity to Respiratory Virus Infection.	GSE149619
7525	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Icam2	Endothelial cells	Organoids	Lung	32414917	Proc Natl Acad Sci U S A	Redundant and additive functions of the four Lef/Tcf transcription factors in lung epithelial progenitors	GSE144170
7526	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Ecad	Epithelial cells	Organoids	Lung	32414917	Proc Natl Acad Sci U S A	Redundant and additive functions of the four Lef/Tcf transcription factors in lung epithelial progenitors	GSE144170
7527	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Cd45	Immune cells	Organoids	Lung	32414917	Proc Natl Acad Sci U S A	Redundant and additive functions of the four Lef/Tcf transcription factors in lung epithelial progenitors	GSE144170
7528	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Ecad	Mesenchymal cells	Organoids	Lung	32414917	Proc Natl Acad Sci U S A	Redundant and additive functions of the four Lef/Tcf transcription factors in lung epithelial progenitors	GSE144170
7529	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	Siglech	Plasmacytoid dentritic cells	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7530	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Airway cells	"Scgb1a1, Foxj1"	Airway cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7531	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	"Rtkn2, Lamp3"	Alveolar cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7532	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7533	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt5, Trp63"	Basal cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7534	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Car4, Plvap, Vwf, Prox1"	Endothelial cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7535	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Wnt5a, Pdgfra"	Fibroblasts	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7536	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7537	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	"Sftpc, Slc34a2, Scd1, Lamp3, Itih4, Scgb1a1, Cyp2f2, Sftpb"	AT2/club	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7538	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Fcmr, Cd79b, Cd19, Fcer2a, Pax5, Cd22"	B cells	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7539	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Clec9a, Cd14, Cd163, Lyz1, Csf1r, Cd300e, Mafb, Batf3, Krt79, Msr1, Itgae, Itgam"	Dendritic cells	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7540	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pparg, Plin2, Fabp1, Fabp4, Fabp5, Lpl, Lipa, Ear2, Ear1, Mrc1, Ccl6, Plet1, Ctss, Mpeg1, Atp6v0d2, Chil3, Abcg1, Krt79, Cybb, Pdgfra"	Lipofibroblasts	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7541	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Col13a1, Col14a1, Fn1, Eln, Vcam1, Fgf10"	Matrix fibroblasts	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7542	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Acta2, Myh11, Tagln, Hhip, Aspn, Mustn1, Enpp2, Igfbp3, Grem2, Lum, Bmp5"	Myofibroblasts	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7543	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzma, Klrb1c, Ncr1, Klra4, Eomes, Gzmb, Fasl, Klrk1"	Natural killer (NK) cells	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7544	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Mcam, Pecam1"	Pericytes_endothelial cells	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7545	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	Hba-a1	Red blood cells	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7546	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	"Sftpc, Lyz2"	AT2(alveolar type 2)	Tissue	Lung	32707077	Cancer Cell	Emergence of a High-Plasticity Cell State during Lung Cancer Evolution	GSE152607
7547	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alveolar cells	"Hopx, Pdpn"	AT1(normal alveolar type 1)	Tissue	Lung	32707077	Cancer Cell	Emergence of a High-Plasticity Cell State during Lung Cancer Evolution	GSE152607
7548	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ctla2a, Emb, Ccr2, Rps15a, Rpl10a"	Immature Natural killer (NK) cells	Organoids	Lung	32747815	Nat Immunol	ILC2-driven innate immune checkpoint mechanism antagonizes NK cell antimetastatic function in the lung	NA
7549	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Pim1, Nfkbia, Gadd45b, Ccl4, Icam1"	Natural killer (NK) cells	Organoids	Lung	32747815	Nat Immunol	ILC2-driven innate immune checkpoint mechanism antagonizes NK cell antimetastatic function in the lung	NA
7550	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Kcnj8, Ly6c2"	Natural killer (NK) cells	Organoids	Lung	32747815	Nat Immunol	ILC2-driven innate immune checkpoint mechanism antagonizes NK cell antimetastatic function in the lung	NA
7551	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ptprc, Cd3e, Lyz2, Cd19, Itgax"	Dendritic cells	Tissue	Lung	32816604	Autophagy	Autophagic protein ATG5 controls antiviral immunity via glycolytic reprogramming of dendritic cells against respiratory syncytial virus infection	NA
7552	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ptprc, Cd3e, Lyz2, Cd19, Itgax"	Dendritic cells	Tissue	Lung	32816604	Autophagy	Autophagic protein ATG5 controls antiviral immunity via glycolytic reprogramming of dendritic cells against respiratory syncytial virus infection	NA
7553	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd20	B cells	Tissue	Lung	32855420	Nat Commun	Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages	GSE141733
7554	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Lung	32855420	Nat Commun	Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages	GSE141733
7555	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	Cd3e	T-lymphocytes	Tissue	Lung	32855420	Nat Commun	Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages	GSE141733
7556	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta2	Vascular smooth muscle cells	Tissue	Lung	32855420	Nat Commun	Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages	GSE141733
7557	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Npnt, Col1a1"	Stromal cells	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7558	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Trbc2	T cells	Tissue	Lung	30318149	Cell	Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting	GSE119228
7559	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Ms4a1, Cd19"	B cells	Organoids	Lung	32977837	Stem Cell Res Ther	Immunosuppressive effects of mesenchymal stem cells on lung B cell gene expression in LPS-induced acute lung injury	NA
7560	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd3d"	T cell	Tissue	Lung	31391335	JCI Insight	High-dimensional analysis reveals a pathogenic role of inflammatory monocytes in experimental diffuse alveolar hemorrhage	GSE133083
7561	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Tm4sf1	Alveolar epithelial progenitors	Tissue	Lung	32989251	Nat Cell Biol	STAT3-BDNF-TrkB signaling promotes alveolar epithelial regeneration after lung injury	GSE132535
7562	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Gata3, Il1rl1"	Innate lymphoid cells (ILCs)	Organoids	Lung	33002412	Immunity	In Situ Maturation and Tissue Adaptation of Type 2 Innate Lymphoid Cell Progenitors	GSE141330
7563	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	Zbtb16	Innate lymphoid cells progenitors (ILCPs)	Organoids	Lung	33002412	Immunity	In Situ Maturation and Tissue Adaptation of Type 2 Innate Lymphoid Cell Progenitors	GSE141330
7564	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	T cells	Tissue	Lung	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
7565	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd4, Sell"	C1	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7566	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd44, Sell"	C5	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7567	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd4, Foxp3"	C6	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7568	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd44, Mki67"	C7	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7569	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd8a, Sell"	C0	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7570	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd8a, Sell"	C8	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7571	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Klrg1	C3	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7572	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Sell, Gzma, Gzmb"	C10	Tissue	Lung	31883968	Cancer Cell	CDK7 Inhibition Potentiates Genome Instability Triggering Anti-Tumor Immunity in Small Cell Lung Cancer	GSE129299ï¼_cRNA-seq GSE129299
7573	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Stab1, Cd3, Cd4, CD8, Ifng"	CD4/CD8 T cells	Tissue	Lung	32101596	PLoS Pathog	Two waves of pro-inflammatory factors are released during the influenza A virus (IAV)- driven pulmonary immunopathogenesis	NA
7574	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3E	T cells	Tissue	Lung	32317643	Nat Commun	Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis	GSE132771
7575	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	T cells	Tissue	Lung	32461220	Dis Model Mech	Quantitative single-cell interactomes in normal and virus-infected Mouse lungs	GSE144769
7576	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd3e, Cd3g, Cd28, Cd4, Ifng"	T cells	Tissue	Lung	32473656	Cancer Cell	MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate	NA
7577	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd68"	T cells	NA	Lung	32581358	Nature	IL-18BP is a secreted immune checkpoint and barrier to IL-18 immunotherapy	GSE146609
7578	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Lung	33116313	Nature	Exuberant fibroblast activity compromises lung function via ADAMTS4	PRJNA612345
7579	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3d	T cells	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7580	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Scgb1a1, Foxj1, Sftpc, Hopx"	Endothelial cells	Tissue	Lung	33180746	J Clin Invest	Age-determined expression of priming protease TMPRSS2 and localization of SARS-CoV-2 in lung epithelium	GSE160876
7581	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Tnfrsf17"	Plasma B cells	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7582	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7583	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7584	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Klrb1c	Natural killer (NK) cells	Tissue	Lung	33357452	Cancer Cell	Immunogenic Chemotherapy Enhances Recruitment of CAR-T Cells to Lung Tumors and Improves Antitumor Efficacy when Combined with Checkpoint Blockade.	GSE158109
7585	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"CD3, CD4, CD8a, CD19"	Lymphocytes	Tissue	Lung	33397719	Proc Natl Acad Sci U S A	Single-cell transcriptomic analysis reveals the immune landscape of lung in steroid-resistant asthma exacerbation	NA
7586	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"CD14, CD68, Ly6C"	Monocytes/macrophages	Tissue	Lung	33397719	Proc Natl Acad Sci U S A	Single-cell transcriptomic analysis reveals the immune landscape of lung in steroid-resistant asthma exacerbation	NA
7587	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	NKG7	Natural killer (NK) cells	Tissue	Lung	33397719	Proc Natl Acad Sci U S A	Single-cell transcriptomic analysis reveals the immune landscape of lung in steroid-resistant asthma exacerbation	NA
7588	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, CD14, Il1b"	Inflammatory macrophages	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7589	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ptprc, CD14, Mrc1, Cd163"	M2-like macrophages	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7590	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a8, Retnlg"	Neutrophils	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7591	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Ptprc, CD19, CD79a"	B cells	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7592	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5"	Endothelial cells	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7593	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Thy1, Dcn"	Fibroblasts	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7594	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Ptprc, CD14"	Myeloid cells	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7595	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Thy1, Dcn, Acta2"	Myofibroblasts	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7596	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Ptprc, Thy1, CD3e, Nkg7"	Natural killer T (NKT) cells	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7597	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Ptprc, CD14, Mki67"	Proliferating myeloid cells	Tissue	Lung and lymph node	32183351	Cancers (Basel)	"Comparative Molecular Analysis of Cancer Behavior Cultured In Vitro, In Vivo, and Ex Vivo."	NA
7598	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Capillary phenotype ec 1(capec1)	"Col4a1, Col4a2, Hlx, Id1, Id3, Igfbp3"	Capillary phenotype ec 1(capec1)	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7599	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Capillary phenotype ec 2(capec2)	"Att3, Cxcl1, Egr1, Fos, Fosb, Jun, Junb, Nfkbia, Nr4a1, Sgk1"	Capillary phenotype ec 2(capec2)	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7600	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dark zone	"Ung, Timeless, Cdt1, Mcm2, Mcm3, Mcm4"	Dark zone	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7601	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dark zone proliferating1	"Top2a, Aurkb, Kif11, Prc1, Ndc80, Nusap1, Cdca5, Smc4"	Dark zone proliferating1	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7602	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dark zone proliferating2	"Nek2, Ccnb1, Psrc1, Cdc20, Cenpa, Ccnb2, Cdkn3, Knstrn"	Dark zone proliferating2	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7603	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Lag3, Pdcd1, Tnfsf8"	Exhausted T cells	Tissue	Lymph node	31457092	Sci Adv	Aging promotes reorganization ofthe CD4 T cell landscape toward extreme regulatory and effector phenotypes	NA
7604	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germinal center	"Cd83, Irf4, Myc, Nfkbia, Cxcr4, Bcl6, Foxo1, Bach2, Aicda, Akt1, Bcl2l11, Cd86, Ezh2, Fos, Mki67, Rela"	Germinal center	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7605	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Interferon-stimulated gene-enriched capec (capifn)	"Cxcl9, Cxcl10, Irf7, Isg15, Lgals9"	Interferon-stimulated gene-enriched capec (capifn)	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7606	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Interfollicular reticular cells	Ch25h	Interfollicular reticular cells	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7607	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Light zone	"Cd86, Syk, Cd79b, Cxcr5, Cd19, Icosl, Bank1, Cd83, Il4ra, Cd74"	Light zone	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7608	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Light zone selected	"Mif, Pa2g4, Nolc1, Nhp2, Fbl, Npm1, Gnl3, Hspe1, Ldha, Mrto4"	Light zone selected	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7609	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphatic valve	Foxc2	Lymphatic valve	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7610	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Marginal reticular cells	"Cr2, Madcam1, Mfge8, Tnfsf11, Ch25h, Hamp"	Marginal reticular cells	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7611	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Medullary reticular cells	Lum	Medullary reticular cells	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7612	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Naive cells	"Lef1, Sell, Igfbp4"	Naive cells	Tissue	Lymph node	31457092	Sci Adv	Aging promotes reorganization ofthe CD4 T cell landscape toward extreme regulatory and effector phenotypes	NA
7613	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Non-hec veins (vn)	"Ackr1, Icam1, Nr2f2, Sele, Selp, Vcam1, Vwf"	Non-hec veins (vn)	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7614	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Peripheral capillary lymphatic vessels	"Ccl21, Lyve1"	Peripheral capillary lymphatic vessels	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7615	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Peripheral lymphatic vessels	"Lyve1, Ccl21"	Peripheral lymphatic vessels	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7616	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Reticulocytes	Cd21	Reticulocytes	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7617	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Stab2	Sinusoidal endothelial	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7618	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Subcapsular sinus ceiling	Ackr4	Subcapsular sinus ceiling	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7619	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Subcapsular sinus floor	Madcam1	Subcapsular sinus floor	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7620	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T_b border reticular cells	"Ccl21a, Ccl19, Fmod"	T_b border reticular cells	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7621	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Transitional ec (trec)	"Apoe, St3gal6"	Transitional ec (trec)	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7622	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Valve	"Cldn11, Esam, Foxc2, Gata2"	Valve	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7623	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Angpt2, Apln, Esm1, Mcam, Nid2, Pdgfb, Pgf, Vim"	Capillary resident progenitors	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7624	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Gzmk, Eomes, Ctla2a"	Cytotoxic T cells	Tissue	Lymph node	31457092	Sci Adv	Aging promotes reorganization ofthe CD4 T cell landscape toward extreme regulatory and effector phenotypes	NA
7625	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Lgals1, S100a4, Itgb1"	Effector memory T cells	Tissue	Lymph node	31457092	Sci Adv	Aging promotes reorganization ofthe CD4 T cell landscape toward extreme regulatory and effector phenotypes	NA
7626	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	"Jchain, Mzb1, Os9, Derl3, Edem2, Prdm1, Irf4, Cxcr3, Tnfrsf17"	Plasma cells	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7627	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmablasts	"Cd79a, Cd79b, Xbp1, Sdc1, Fkbp11, Mki67, Top2a, Cdk1, Ccna2, Cdca3"	Plasmablasts	Tissue	Lymph node	32591393	J IMMUNOL	A Potently Neutralizing Antibody Protects Mice against SARS-CoV-2 Infection	GSE149036
7628	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cxcl1, Cxcl16, Il6, Gstp1, Ptgs2, Cd151, Clec14a, Plat, Ptn, Ecm1, Mmp3, Mmp9, FcεR2A, CD21, CD35, TdTom, MYH11, PDLIM3, Pdlim3"	Dark zone follicular dendritic cells (FDC2)	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7629	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cr2, Madcam1, Mfge8"	Follicular dendritic cells	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7630	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cr2, Fcamr, Fcer2a, Fcgr2b, Coch, Homer2, Postn, Tmem119, Myh11, Sncg, FcεR2A, CD21, CD35, TdTom, MYH11"	Light zone follicular dendritic cells (FDC1)	Tissue	Lymph node	32424359	Nat Immunol	Remodeling of light and dark zone follicular dendritic cells governs germinal center responses	"E-MTAB-8445, E-MTAB-8454, E-MTAB-8904"
7631	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	B220	B cells	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7632	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Ackr4, Cav1, Bmp4, Cd93, Cldn5, Jag1, Pdgfa, Pdgfb, Stab2, Cd9, Cdh13, Edn1, Fabp4, Fn1, Gdf10, Gja4, Klf4, Mmrn1, Mmrn2, Nts, Nudt4"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7633	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Ccl20, Bmp2, Lyve1, Madcam1, Pd-l1, Cd274, Bmp2, Cd74, C2, Clu, Csf1, Ifngr2, Il33, Ltb, Mmp9, Relb, Vcam1, Msr1, Cxcl1, Cxcl16, Glycam1, H2-Ab1, Icam1, Pf4, Smad1, Smad4, Vcam1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7634	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"C2, Cd274, Clec4g, Csf1, Csf2rb, F8, Il2rg, Il33, Ltbp2, Marco, Tnc, Tspan7, Clec1b, Kdr, Lyve1"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7635	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Prox1	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7636	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Reln, Angpt2, Stab2, Tgfbi, Ccl21a, Flt4, Itih5, Kdr, Lyve1, Mgll, Mrc1, Npr1, Npr2, Ptx3"	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7637	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Ptn	Lymphatic endothelial cells (LECs)	Tissue	Lymph node	32426372	Front Cardiovasc Med	A Single-Cell Transcriptional Roadmap of the Mouse and Human Lymph Node Lymphatic Vasculature	"GSE143877, GSE145121"
7638	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Lymph node	30936494	Nature Immunology	Adaptive plasticity of IL-10 and IL-35 T cells cooperatively promotes tumor T cell exhaustion.	GSE126184.
7639	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Foxp3, Il2ra, Ikzf2"	Regulatory T cells (Treg)	Tissue	Lymph node	31457092	Sci Adv	Aging promotes reorganization ofthe CD4 T cell landscape toward extreme regulatory and effector phenotypes	NA
7640	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Arterial ec	"Bmx, Depp1, Gja4, Gja5, Gkn3, Sox17"	Arterial ec (pre-art)	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7641	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Ccl21a, Chst4, Glycam1"	High endothelial cells (HEC)	Tissue	Lymph node	32732867	Nat Commun	A molecular map of murine lymph node blood vascular endothelium at single cell resolution	GSE140348
7642	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd8b1, Ms4a4b, Cd3d, Cd3e, Ccr7, Il7r"	T cells	Tissue	Lymph node	32591393	J IMMUNOL	A Potently Neutralizing Antibody Protects Mice against SARS-CoV-2 Infection	GSE149036
7643	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesoderm cells	"Lhx2, Tnnt1"	Head mesoderm cells.	Tissue	Mandibular arch	30638444	eLife	Hedgehog signaling patterns the oral-aboral axis of the mandibular arch.	GSE112837
7644	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Barx1	Neural crest derived mesenchyme cells 1	Tissue	Mandibular arch	30638444	eLife	Hedgehog signaling patterns the oral-aboral axis of the mandibular arch.	GSE112837
7645	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Hand2	Neural crest derived mesenchyme cells 2	Tissue	Mandibular arch	30638444	eLife	Hedgehog signaling patterns the oral-aboral axis of the mandibular arch.	GSE112837
7646	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Mandibular arch	30638444	eLife	Hedgehog signaling patterns the oral-aboral axis of the mandibular arch.	GSE112837
7647	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Mandibular arch	30638444	eLife	Hedgehog signaling patterns the oral-aboral axis of the mandibular arch.	GSE112837
7648	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Prtn3, Lmo2, Cdk6, Cd34, Ms4a3"	Hematopoietic stem and progenitor cells	Tissue	Marrow	33154494	Sci Rep	The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.	GSE148115
7649	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d , Trbc2"	T cells	Tissue	Marrow	33154494	Sci Rep	The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.	GSE148115
7650	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Ebf1, Iglc2, H2-Aa, H2-Eb1"	B Lymphocytes	Tissue	Marrow	33154494	Sci Rep	The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.	GSE148115
7651	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Ebf1, Mzb1, Vpreb3"	"Pro-B, Pre-B"	Tissue	Marrow	33154494	Sci Rep	The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.	GSE148115
7652	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Tcf4, Ccr9, Siglech"	Dendritic cells	Tissue	Marrow	33154494	Sci Rep	The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.	GSE148115
7653	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Fn1, Ctss"	Monocytes	Tissue	Marrow	33154494	Sci Rep	The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.	GSE148115
7654	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrd1, Klrk1, Klre1, Gzma"	Natural killer (NK) cells	Tissue	Marrow	33154494	Sci Rep	The bone marrow microenvironment of pre-B acute lymphoblastic leukemia at single-cell resolution.	GSE148115
7655	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	Ki67	Proliferative cells	Tissue	Melanoma	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
7656	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Dct, MITF, Pmel"	Melanocytes	Tissue	Melanoma	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
7657	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"S100b, MCAM , Sox10"	Melanoma	Tissue	Melanoma	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
7658	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Pdgfra	Mesenchymal cells	Tissue	Melanoma	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
7659	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nestin, Tubb3 , Ngfr"	Neural crest cells	Tissue	Melanoma	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
7660	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxd3, L1cam"	Neural crest cells	Tissue	Melanoma	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
7661	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	Pdgfra	Adipose mesenchymal cells and precursors	Tissue	Mesentery	29728440	J Exp Med	Peripheral PDGFRalphagp38 mesenchymal cells support the differentiation of fetal liver-derived ILC2.	GSE102665
7662	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	KLRG1	ILC2/NK	Tissue	Mesentery	29728440	J Exp Med	Peripheral PDGFRalphagp38 mesenchymal cells support the differentiation of fetal liver-derived ILC2.	GSE102665
7663	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	M cells	"Zmat3, Mmp15, Myadm, Anxa5, Marcksl1"	M cells	Organoids	Mini-intestine	32939089	Nature	Homeostatic mini-intestines through scaffold-guided organoid morphogenesis	NA
7664	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Regenerating cells	Ly6a	Regenerating cells	Organoids	Mini-intestine	32939089	Nature	Homeostatic mini-intestines through scaffold-guided organoid morphogenesis	NA
7665	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Clu, Msln"	Revival stem cells	Organoids	Mini-intestine	32939089	Nature	Homeostatic mini-intestines through scaffold-guided organoid morphogenesis	NA
7666	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Fgfbp1, Dmbt1, Pdss1, Prss32"	Immature enterocytes	Organoids	Mini-intestine	32939089	Nature	Homeostatic mini-intestines through scaffold-guided organoid morphogenesis	NA
7667	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Ada, Ifrd1, Krt20, Pmp22, Serpinb1a"	Villus-top enterocytes	Organoids	Mini-intestine	32939089	Nature	Homeostatic mini-intestines through scaffold-guided organoid morphogenesis	NA
7668	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Fgfr3, Postn"	Cluster 0	Tissue	Molars	33038290	Stem Cells	Stem cell contributions to cementoblast differentiation in healthy periodontal ligament and periodontitis	NA
7669	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Dmp1, Ibsp, Bglap"	Cluster 2	Tissue	Molars	33038290	Stem Cells	Stem cell contributions to cementoblast differentiation in healthy periodontal ligament and periodontitis	NA
7670	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Apod, Ccl11"	Cluster 3	Tissue	Molars	33038290	Stem Cells	Stem cell contributions to cementoblast differentiation in healthy periodontal ligament and periodontitis	NA
7671	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gabaergic acs	"Gad1, Gad2"	Gabaergic acs	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7672	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glycinergic acs	"Slc6a5, Slc6a9"	Glycinergic acs	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7673	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Primary prcs	"Ccnd2, Fgf15"	Primary prcs	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7674	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Reticulocytes	"Hba-a1, Hba-a2, Hbb-bs, Hbb-bt"	Reticulocytes	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7675	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Isl2, Pou4f1, Pou4f2, Pou4f3, Rbpms"	Retinal ganglion cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7676	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Lrat, Pmel, Rpe65, Tyr"	Retina pigment epithelium	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7677	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	"Guca1b, Nrl, Rho, Rom1"	Rods	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7678	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Bhlhe23, Cabp5"	Bipolar cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7679	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Arr3, Cnga3, Opn1mw, Opn1sw, Thrb"	Cones	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7680	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Onecut1, Onecut2"	Horizontal cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7681	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Gfap	Astrocytes	Cell line	Muller glia	31383796	Development	"MicroRNAs miR-25, let-7 and miR-124 regulate the neurogenic potential of Mu_ ller glia in Mouse"	GSE135816
7682	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Fn1	Endothelial cells	Cell line	Muller glia	31383796	Development	"MicroRNAs miR-25, let-7 and miR-124 regulate the neurogenic potential of Mu_ ller glia in Mouse"	GSE135816
7683	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Aif1	Microglia cells	Cell line	Muller glia	31383796	Development	"MicroRNAs miR-25, let-7 and miR-124 regulate the neurogenic potential of Mu_ ller glia in Mouse"	GSE135816
7684	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prox1	Neurons	Cell line	Muller glia	31383796	Development	"MicroRNAs miR-25, let-7 and miR-124 regulate the neurogenic potential of Mu_ ller glia in Mouse"	GSE135816
7685	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Abca8a, Aldh1a1, Kcnj10"	Muller cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7686	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Aqu4, Rlbp1, Glul, Cnnd1, GLAST, Slc1a3"	Muller glia cells	Cell line	Muller glia	31383796	Development	"MicroRNAs miR-25, let-7 and miR-124 regulate the neurogenic potential of Mu_ ller glia in Mouse"	GSE135816
7687	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Acta2, Kcnj8, Pdgfrb"	Pericytes	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7688	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Cdk4	Retinal progenitor cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7689	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Cbln4, Tfap2b"	Amacrine cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7690	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Pax2, Pdgfra, S100b"	Astrocytes	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7691	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Csf2rb, Csf2rb2, Cx3cr1, Mpeg1, Ptprc, Tmem119"	Microglia cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7692	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mbp, Mog, Olig1"	Oligodendrocytes	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7693	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam1, Tek, Tie1"	Vascular/endothelial cells	Tissue	Muller glia	33004674	Science	Gene regulatory networks controlling vertebrate retinal regeneration	GSE135406
7694	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Tbx1"	Pharynx	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7695	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Nkx2-1, Foxa2"	Respiratory	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7696	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Sox2"	Esophagus	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7697	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Sox2, Osr1"	Stomach	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7698	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Alb, Prox1, Afp"	Hepatic	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7699	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Sox17, Pdx1"	Ventral hepatopancreatic duct	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7700	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Mnx1, Pdx1"	Dorsal pancreas	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7701	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	De cluster	"Foxa1, Foxa2, Cdh1, Epcam, Cdx2"	Duodenum	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7702	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal tubule cells	"Slc12a1, Spp2, Lrp2, Wfdc15b, Ppp1r1a, kng2, Umod, Atp1a1"	Distal tubule cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7703	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dividing cells	"Stmn1, Top2a, Mki67, Hmgb2, Tubb5, Cks1b, Plac8, Pclaf"	Dividing cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7704	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intercalated cells	"Slc12a1, Atp6v1g3, Hsd11b2, Aqp4, Aqp2, Spp2, Lrp2"	Intercalated cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7705	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intercalated cells	"Atp6v1g3, Tfcp2l1, Atp6v0d2, Tmeme213, Car2"	Intercalated cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7706	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanoma cells	CD31	Intravascular melanoma cells	Tissue	Multiple tissues	32553158	Cell Rep	Human metastaticmelanoma patient GSE72056Single Cell RNaseq data from NRAS Mouse model GEO	GSE148666
7707	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Loop of henle	"Aqp1, Spp2, Lrp2, Cryab, Apela, Bst1, Epcam, Plet1"	Loop of henle	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7708	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mp	"Sell, Cd28, Il7r, Cd27, Cxcr3"	Mp	Tissue	Multiple tissues	32728699	J Exp Med	A committed tissue-resident memory T cell precursor within the circulating CD8+ effector T cell pool.	GSE152282
7709	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Tcf1, Slamf6"	TM cells	Tissue	Multiple tissues	32846135	Cell Rep	Landscape of Exhausted Virus-Specific CD8 T Cells in Chronic LCMV Infection	PRJEB36998
7710	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	Cx3cr1	TE cells	Tissue	Multiple tissues	32846135	Cell Rep	Landscape of Exhausted Virus-Specific CD8 T Cells in Chronic LCMV Infection	PRJEB36998
7711	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Principal cells	"Hsd11b2, Aqp4, Aqp2, Spp2, Lrp2, Aqp3, Fxyd4, Rhcg"	Principal cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7712	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sm	"Foxf1, Vim, Pdgfra, Tbx1, Prrx1"	Pharyngeal	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7713	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cardiac cells	"Foxf1, Vim, Pdgfra, Isl1, Mtus2"	Cardiac outflow tract cells	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7714	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sm	"Foxf1, Vim, Pdgfra, Nkx6-1, Gata4, Wnt2"	Respiratory	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7715	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sm	"Foxf1, Vim, Pdgfra, Nkx6-1, Sfrp2, Wnt4"	Esophageal mesenchyme	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7716	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sm	"Foxf1, Vim, Pdgfra, Barx1, Hlx"	Stomach mesenchyme populations	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7717	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sm	"Foxf1, Vim, Pdgfra, Hand1, Hoxc8"	Duodenum mesenchyme population	Tissue	Multiple tissues	32855417	Nat Commun	Single cell transcriptomics identifies a signaling network coordinating endoderm and mesoderm diversification during foregut organogenesis	"GSE136689, GSE136687"
7718	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Te	"Klf2, Tbx21, Cx3cr1, Klrg1, Zeb2"	Te	Tissue	Multiple tissues	32728699	J Exp Med	A committed tissue-resident memory T cell precursor within the circulating CD8+ effector T cell pool.	GSE152282
7719	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tip cells	"Apln, Col4a2, Trp53i11"	Tip cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7720	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tissue-resident memory T cells	"CD103, CD69"	Tissue-resident memory T cells	Tissue	Multiple tissues	32728699	J Exp Med	A committed tissue-resident memory T cell precursor within the circulating CD8+ effector T cell pool.	GSE152282
7721	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"CD8, Il7r, Cxcr3"	MEMORY	Tissue	Multiple tissues	29326266	Science	The epigenetic control of stemness in CD8 + T cell fate commitment	"GSE106264, GSE106265, GSE106267"
7722	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"CD8, Klrg1, Zeb2"	EFFECTOR	Tissue	Multiple tissues	29326266	Science	The epigenetic control of stemness in CD8 + T cell fate commitment	"GSE106264, GSE106265, GSE106267"
7723	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"CD8, Mcm5, Pcna"	CYCLING	Tissue	Multiple tissues	29326266	Science	The epigenetic control of stemness in CD8 + T cell fate commitment	"GSE106264, GSE106265, GSE106267"
7724	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"CD8, Cxcr6, Rnf138, ll18r1, Traf1"	STEMNESS	Tissue	Multiple tissues	29326266	Science	The epigenetic control of stemness in CD8 + T cell fate commitment	"GSE106264, GSE106265, GSE106267"
7725	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Clec4F, RFP"	B cells	Tissue	Multiple tissues	30076102	Immunity	The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages	GSE117081
7726	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD69, CD103, CD127"	Effector T cells	Tissue	Multiple tissues	32728699	J Exp Med	A committed tissue-resident memory T cell precursor within the circulating CD8+ effector T cell pool.	GSE152282
7727	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Gzmb, Ifng, Tbx21, Klra1, Klra7, Klra9"	Cluster2 and 4	Tissue	Multiple tissues	31257026	Cell	Neutrophils Driving Unconventional T Cells Mediate Resistance against Murine Sarcomas and Selected Human Tumors	GSE123508
7728	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"CD31, CENPE, EOMES, GLAST, TOP2A"	C6	Tissue	Multiple tissues	31091443	Cell Rep	Mesenchymal Stromal Cells Are Required for Regeneration and Homeostatic Maintenance of Skeletal Muscle	NA
7729	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatic stellate cells	"Dcn, Aebp1, Timp2, C3, Serping1, C1s1, Col1a2"	Hepatic stellate cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7730	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Kupffer cells	"Cd5l, C1qc, Csf1r, Ctsc, Ctss, Clec4f, Vsig4, Laptm5, Cd44, C1qa, Ptprc, Lyz2, Adgre1, C1qb"	Kupffer cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7731	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Leukocytes	Ptprc	Leukocytes	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7732	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Zeb2	Macrophages	Tissue	Multiple tissues	30076102	Immunity	The Transcription Factor ZEB2 Is Required to Maintain the Tissue-Specific Identities of Macrophages	GSE117081
7733	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"MhcII, Cd11c, XCR1, CLEC9A, CD8A, IRF8"	CLEC9A+XCR1+cDC1	NA	Multiple tissues	31668803	Cell	Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity	GSE137710
7734	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"MhcII, Cd11c, DTX1, ESAM"	T-bet+CD11b+SIRPa+cDC2	NA	Multiple tissues	31668803	Cell	Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity	GSE137710
7735	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"MhcII, Cd11c, CLEC12A, CX3CR1, CD14, IL1A, P2RX7, CLEC10A, NKG2D, MGL2, CD209A"	T-bet-CD11b+SIRPa+cDC2	NA	Multiple tissues	31668803	Cell	Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity	GSE137710
7736	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Ly6C	Monocytes	NA	Multiple tissues	31668803	Cell	Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity	GSE137710
7737	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Ccl9, Lgals3, Arg1, Lyz2, Ccl6, Ctss, Mpeg1, Cybb"	Macrophages	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7738	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mait-like cells	"Cxcr6, Rorc, Icos, Zbtb16, Tmem176a, ll17a, Rorc"	Mait-like cells	Tissue	Multiple tissues	31257026	Cell	Neutrophils Driving Unconventional T Cells Mediate Resistance against Murine Sarcomas and Selected Human Tumors	GSE123508
7739	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Slc2a1, Itm2a, Bsg, Slcolc1, Pglyrp1"	Brain endothelial cells	Tissue	Multiple tissues	31850371	Front Cardiovasc Med	Single Cell Analysis of Endothelial cellss Identified Organ-Specific Molecular Signatures and Heart-Specific Cell Populations and Molecular Features	"GSE122403, GSE109774"
7740	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Clec4g, Dnase113"	Liver Endothelial cells	Tissue	Multiple tissues	31850371	Front Cardiovasc Med	Single Cell Analysis of Endothelial cellss Identified Organ-Specific Molecular Signatures and Heart-Specific Cell Populations and Molecular Features	"GSE122403, GSE109774"
7741	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Tmem100, Foxf1a, Ace"	Lung	Tissue	Multiple tissues	31850371	Front Cardiovasc Med	Single Cell Analysis of Endothelial cellss Identified Organ-Specific Molecular Signatures and Heart-Specific Cell Populations and Molecular Features	"GSE122403, GSE109774"
7742	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Csf2rb, Angptl4"	Fat endothelial cells	Tissue	Multiple tissues	31850371	Front Cardiovasc Med	Single Cell Analysis of Endothelial cellss Identified Organ-Specific Molecular Signatures and Heart-Specific Cell Populations and Molecular Features	"GSE122403, GSE109774"
7743	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Slc28a2	Heart endothelial cells	Tissue	Multiple tissues	31850371	Front Cardiovasc Med	Single Cell Analysis of Endothelial cellss Identified Organ-Specific Molecular Signatures and Heart-Specific Cell Populations and Molecular Features	"GSE122403, GSE109774"
7744	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cd31, Cdh5"	Endothelial cells	Tissue	Multiple tissues	31944177	eLife	"Quantitative Clonal Analysis and Single-Cell Transcriptomics Reveal Division Kinetics, Hierarchy, and Fate of Oral Epithelial Progenitor Cells"	"GSE99235, GSE98816"
7745	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Gkn3, Hey1"	Brain arterial endothelial cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7746	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Esm1	Choroid plexus capillary endothelial cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7747	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Pecam1"	Endothelial cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7748	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a1	Fibroblasts	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7749	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Fbln5, Hey1, Mecom, Cxcl12, Rbp7, Kdr, Endou, Vcam1, Fmo1, Fmo2, Mgp, Cfh, Bgn, Vwf, Isg15, lfit1, lfit3, lfit3b, Rgcc, Trp53i11, Col4a1, Lgals1, Aplnr, Apln"	Heart endothelial cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7750	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Prox1, Lyve-1.Pdpn"	Lymphatic endothelial cells (LECs)	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7751	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta2	Smooth muscle cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7752	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5"	Vascular endothelial cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7753	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Bgn	Venous endothelial cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7754	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a9, S100a8, Lilr4b, Tyrobp, Cebpb, S100a11"	Neutrophils	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7755	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Pdgfrb	Pericytes	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7756	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Phagocytes	NA	Fibroblasts and mononuclear phagocytes	Tissue	Multiple tissues	30356220	Nature	Gene expression variability across cells and species shapes innate immunity	"E-MTAB-5918, E-MTAB-5919, E-MTAB-5920, E-MTAB-6754, E-MTAB-6773, E-MTAB-5988, E-MTAB-5989, E-MTAB-6831, E-MTAB-6066, E-MTAB-7032, E-MTAB-7037, E-MTAB-7051, E-MTAB-7052."
7757	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	"Mzb1, Igkc, Jchain, H13, Txndc5, Sec11c, Herpud1"	Plasma cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7758	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal tubular cells	"Spp2, Lrp2, Slc34a1, Miox, Acsm2, Acsm2, Acsm2"	Proximal tubular cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7759	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	"Hba-a1, Hbaa2, Hbb-bs"	Red blood cells	Tissue	Multiple tissues	32059779	Cell	Single-Cell Transcriptome Atlas of Murine Endothelial cellss	GSE99235
7760	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd19, Cd79b"	B cells	Organoids	Multiple tissues	32663200	JCI Insight	Developmental changes in myocardial B cells mirror changes in B cells associated with different organs	GSE153569
7761	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD21, CD23"	B cells	Organoids	Multiple tissues	32663200	JCI Insight	Developmental changes in myocardial B cells mirror changes in B cells associated with different organs	GSE153569
7762	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	NA	B cells	Organoids	Multiple tissues	32663200	JCI Insight	Developmental changes in myocardial B cells mirror changes in B cells associated with different organs	GSE153569
7763	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD5, IgM"	CD11B B cells	Organoids	Multiple tissues	32663200	JCI Insight	Developmental changes in myocardial B cells mirror changes in B cells associated with different organs	GSE153569
7764	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"IgM, IgD, CD21, CD23."	CD11B- B cells	Organoids	Multiple tissues	32663200	JCI Insight	Developmental changes in myocardial B cells mirror changes in B cells associated with different organs	GSE153569
7765	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	CD31	Endothelial cells	Organoids	Multiple tissues	32663200	JCI Insight	Developmental changes in myocardial B cells mirror changes in B cells associated with different organs	GSE153569
7766	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Nr4a1, Junb, Fos, Dusp1, Ppp1r15a, Sertad1, Plaur, Vps37b, Ier2, H3f3b, Plk2, Cebpb, Ubc, Hspa5, Pnrc1, Eif1, Litaf, Hspa8, Tuba1c, Rrad, Hs3st1, Blk, Samhd1, mt-Nd5, Foxp1, Arpc5l, Tcf3, Ikzf3, Gm30211, Ifi27l2a, Arhgap45, Pld4, Hck, mt-Atp8, Pou2f2, mt-"	Organ-associated B cells	Organoids	Multiple tissues	32663200	JCI Insight	Developmental changes in myocardial B cells mirror changes in B cells associated with different organs	GSE153569
7767	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Antigen-presenting cells (APC)	"Psap, Fcer1g, Cd74"	Antigen-presenting cells (APC)	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7768	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Artery and vein	"Kdr, Cdh5, Aqp1, Spp2, Lrp2, lfitm3, Ly6c1, H2-D1, Emcn"	Artery and vein	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7769	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Ighm, Cd74, Ebf1, Igkc, H2-Aa, H2-Eb1, Ebf1"	B cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7770	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Laptm5, Coro1a, Sh3bgrl3, Alox5ap, Spi1, Lsp1, Cd74, Gm2a, Syngr2"	Dendritic cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7771	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Aqp1, Dnase1l3, Igfbp7, Gpr182, Ptprb, Eng, Kdr, Ehd3, Oit3, Fcgr2b, Mcam"	Liver sinusoidal Endothelial cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7772	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Rspo3, Wnt2, Adgrg6, Efnb1, Gpr182, Ptprb, Aqp1, Adgrf5, Gpihbp1, Eng, Dnase1l3, Igfbp7"	Endothelial cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7773	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Rspo3, Wnt2"	Endo-pc	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7774	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Adgrg6, Efnb1"	Endo-pp	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7775	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Spp2, Lrp2, Cnn1, Myl9, Acta2, Tagln, Sparcl1, Mylk"	Vascular smooth muscle cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7776	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ptprc, Nkg7, Ccl5, Tmsb10, Vps37b, Il2rb, Ptpn22, Trbc2"	T cells	Organoids	Multiple tissues	32949498	Cell Metab	Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16 high Cells In Vivo	GSE155182
7777	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ec	"Pecam1, Kdr"	Ec	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7778	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ec	Pecam-1	Ec	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7779	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Faps	Pdgfra	Faps	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7780	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Faps	Pdgfra	Faps	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7781	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta1	Mature skeletal muscle	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7782	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mph	Adgre1	Mph	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7783	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Ckm, Myh1"	IIx	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7784	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Ckm, Myh4"	IIb	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7785	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Ckm, Myh2"	IIa	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7786	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Ckm, Myh1, Myh4, Tnnc2, Tnni2, Mb, Cox6a2, Cox6c, Atp5e, Atp5g1"	IIx_b	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7787	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Ckm, Chrne, Colq, Prkar1a, Col25a1, Lama2"	NMJ	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7788	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Ckm, Col22a1, Lama2"	MTJ	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7789	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonucler	"Tnnc2, Myh4"	Myonucler	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7790	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pro-inflammatory maccrophages	Ccl6	Pro-inflammatory maccrophages	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7791	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Prolif ic	"Mik67, Top2a"	Prolif ic	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7792	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Regmyon	"Myh3, Myh8"	Regmyon	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7793	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Vcam1, Myod1, Myf5, Des"	Skeletal muscle stem cells	Tissue	Muscle	30890574	DEVELOPMENT	Single cell analysis of adult Mouse skeletal muscle stem cells in homeostatic and regenerative conditions	NA
7794	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	VCAM1	Skeletal muscle stem cells	Tissue	Muscle	30890574	DEVELOPMENT	Single cell analysis of adult Mouse skeletal muscle stem cells in homeostatic and regenerative conditions	NA
7795	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tc	Mkx	Tc	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7796	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tenocytes	Scx	Tenocytes	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7797	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tenocytes	"Scx, Tnmd"	Tenocytes	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7798	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Prrx1, Col1a1"	Fibro-adipogenic progenitors	Tissue	Muscle	32533926	Am J Pathol	Myocardial B cells are a subset of circulating lymphocytes with delayed transit through the heart	GSE144270
7799	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Pdgfra	Fifibro/adipogenic progenitors	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7800	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	Ptn	Glial cells	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7801	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	C1qa	Anti-inflammatory macrophages	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7802	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cxcl3	M1 macrophages	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7803	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cxcl3	M2 macrophages	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7804	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cd74	Resident macrophage	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7805	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Pax7	Muscle stem cells	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7806	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Pax7, Myod1"	Muscle stem cells	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7807	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Pax7	Muscle stem cells	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7808	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myoblasts	Megf10	Myoblasts	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7809	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a8, Cxcl3, S100a9"	Neutrophils	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7810	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Myl9	Smooth muscle cells	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7811	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Antigen-presenting cells (APC)	Ccr7	Antigen-presenting cells (APC)	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7812	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col3a1, Ly6a, Col1aa"	Fibroblasts	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7813	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Acp5	Monocytes	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7814	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Notch3, Rgs5"	Pericytes	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7815	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	Mpz	Schwann cells	Tissue	Muscle	32160558	Cell Rep	Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration	"GSE143435, GSE143437"
7816	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Loxl2	Angiogenic S1 cells	Tissue	Muscle	32226549	Theranostics	CD8 + T-cell plasticity regulates vascular regeneration in type-2 diabetes	PRJNA593898
7817	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ccr7, Sell"	Central memory S1 cells	Tissue	Muscle	32226549	Theranostics	CD8 + T-cell plasticity regulates vascular regeneration in type-2 diabetes	PRJNA593898
7818	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Klrg1, Cd44, Ifngr1, Stat4, Zeb2, Id2h"	Effector S2 cells	Tissue	Muscle	32226549	Theranostics	CD8 + T-cell plasticity regulates vascular regeneration in type-2 diabetes	PRJNA593898
7819	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd28, Id2"	Effector memory S2 cells	Tissue	Muscle	32226549	Theranostics	CD8 + T-cell plasticity regulates vascular regeneration in type-2 diabetes	PRJNA593898
7820	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Id3, Cd69"	Tissue resident memory S3 cells	Tissue	Muscle	32226549	Theranostics	CD8 + T-cell plasticity regulates vascular regeneration in type-2 diabetes	PRJNA593898
7821	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Ccr7	T cells	Tissue	Muscle	32248062	iScience	Temporal Dynamics and Heterogeneity of Cell Populations during Skeletal Muscle Regeneration.	GSE138826
7822	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Myh11	Smooth muscle cells	Tissue	Muscle	33148801	Proc Natl Acad Sci U S A	Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing	GSE156498
7823	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Caps	Fap	Caps	Tissue	NA	33298926	Nat commun	TGFbeta-blockade uncovers stromal plasticity in tumors by revealing the existence of a subset of interferon-licensed fibroblasts	GSE160687
7824	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cluster5	Cd24a	Cluster5	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7825	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cluster5	Cd24a	Cluster5	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7826	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dn2 cells	"Cd117, Cd44, Hoxa9, Lmo2, Mef2c, Gfi1b, Lyl1, Spi1, Bcl11a, Mycn, Hhex"	Dn2 cells	NA	NA	30765463	J Exp Med	The transcription factor Duxbl mediates elimination of pre-T cells that fail beta-selection	GSE118059
7827	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dn3 cells	"CD3gamma, CD3delta, CD3ε, Rag1, Rag2, Ptcra, Tcf12, Ets, Ahr, Notch3, SpiB"	Dn3 cells	NA	NA	30765463	J Exp Med	The transcription factor Duxbl mediates elimination of pre-T cells that fail beta-selection	GSE118059
7828	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dn4 cells	"Cd4, Cd8, Rorc, Id3"	Dn4 cells	NA	NA	30765463	J Exp Med	The transcription factor Duxbl mediates elimination of pre-T cells that fail beta-selection	GSE118059
7829	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mature classical dc	"Syngr2, Cd83, Fscn1, Cacnb3, Ccr7, Ccl22"	Mature classical dc	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7830	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mg	Glul	Mg	Tissue	NA	32075759	Cell Rep	STAT Signaling Modifies Ascl1 Chromatin Binding and Limits Neural Regeneration from Muller Glia in Adult Mouse Retina	NA
7831	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mg	Glul	Mg	Tissue	NA	32075759	Cell Rep	STAT Signaling Modifies Ascl1 Chromatin Binding and Limits Neural Regeneration from Muller Glia in Adult Mouse Retina	NA
7832	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Itgam, Ms4a4c, Oasl1, Cxcl10, Isg15, Rsad2, Ifit1, Ifit2, Ifit3"	Monocyte-derived ifn-induced cells	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7833	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	S100a9	Myeloid-derived suppressor cells (mdsc)	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7834	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Itgam, Arg1, Spp1, Fn1, Clec4d, Prdx1"	Myeloid-derived suppressor cells (mdsc)	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7835	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	Mki67	Proliferating cells	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7836	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Seminal vesicle	"Pax2, Pate4, Calml3"	Seminal vesicle	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7837	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Plzf, Sall4, Vasa"	Spermatogonia and germ cell	Tissue	NA	30026551	Nat Commun	Identification of dynamic undifferentiated cell states within the male germline	GSE107256
7838	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg1	"Id4, Etv5, Gfra1, Lhx1, Ret"	Spg1	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117708
7839	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg1	"Id4, Etv5, Gfra1, Lhx1, Ret"	Spg1	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117708
7840	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg2	"Ddit4, Utf1, Egr4, Pramef12, Sall4, Plzf"	Spg2	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117709
7841	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg2	"Ddit4, Utf1, Egr4, Pramef12, Sall4, Plzf"	Spg2	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117709
7842	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg3	"Kit, Sra8 , Dnmt3b, Pramef12, Sall4, Plzf"	Spg3	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117710
7843	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg3	"Kit, Sra8 , Dnmt3b, Pramef12, Sall4, Plzf"	Spg3	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117710
7844	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg4	"Prss50, Ly6k, Hormad1, Prdm9"	Spg4	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117711
7845	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spg4	"Prss50, Ly6k, Hormad1, Prdm9"	Spg4	Tissue	NA	31729367	Nat Commun	Sertoli cell-only phenotype and scRNA-seq define PRAMEF12 as a factor essential for spermatogenesis in Mouse	GSE117711
7846	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	"Tam, m1-like"	"Itgam, Adgre1, C1qc, Sepp1, Cxcl9, Cxcl10, Ccl2, Ccl12"	"Tam, m1-like"	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7847	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	"Tam, m1-proliferating"	"Itgam, Adgre1, C1qc, Cx3cr1, Ccl2, Stmm1, Hmyb2, Top2a, Mki67, Cd3g, Cd8a, Slamf6"	Stem CD8+ T	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7848	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	"Tam, m2a-like"	"Itgam, Adgre1, C1qc, Ctsd, Arg1, Hmox1, Mmp12"	"Tam, m2a-like"	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7849	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	"Tam, m2b-like"	"Itgam, Adgre1, C1qc, Sepp1, Pf4, Ctsd, Ccl8, Trem2, Cd3g, Cd8a, Tim3"	Cytotoxic CD8+T	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7850	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	"Tam, m2c-like"	"Itgam, Adgre1, C1qc, Sepp1, Pf4, Mrc1, Xd163"	"Tam, m2c-like"	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7851	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	"Tam, m2d-like"	"Itgam, Adgre1, C1qc, Sepp1, Ccl5, Cd3g, Cd8a"	Proliferating CD8+T	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7852	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	"Tam, m2-not other specified"	"Itgam, Adgre1, C1qc, Sepp1"	"Tam, m2-not other specified"	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7853	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Sox9, Csn3, Wfdc18, Lcn2, Mfge8, Phlda1, Tm4sf1, Fxyd3"	Tumor Epithelial cells	NA	NA	31251913	Cell	"Inadequate DNA Damage Repair Promotes Mammary Transdifferentiation, Leading to BRCA1 Breast Cancer"	NA
7854	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Bcl6b, Id4, Pax7"	Stem cells	Tissue	NA	30026551	Nat Commun	Identification of dynamic undifferentiated cell states within the male germline	GSE107256
7855	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"H2Aa, Flt3"	Dendritic cells	Cell line	NA	30245008	Cell	LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance	GSE118019
7856	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Mafb, Ly6c2"	Monocytes	Cell line	NA	30245008	Cell	LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance	GSE118019
7857	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Differentiated cells	"Kit, Stra8"	Differentiated cells	Tissue	NA	30026551	Nat Commun	Identification of dynamic undifferentiated cell states within the male germline	GSE107256
7858	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	HBB-BT	Erythroid progenitors	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7859	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	Sox10	Glial cells	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7860	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	Ptprc	Hematopoietic cells	Tissue	NA	33298926	Nat commun	TGFbeta-blockade uncovers stromal plasticity in tumors by revealing the existence of a subset of interferon-licensed fibroblasts	GSE160687
7861	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Pdcd1, Eomes, Cd38"	Expanded CD8 T cells	Tissue	NA	31398344	Cell	Opposing Functions of Interferon Coordinate Adaptive and Innate Immune Responses to Cancer Immune Checkpoint Blockade	"GSE72056, GSE131927"
7862	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Pd1, Pdcd1, Trail, Tfnsf10"	ILC1s	Tissue	NA	31398344	Cell	Opposing Functions of Interferon Coordinate Adaptive and Innate Immune Responses to Cancer Immune Checkpoint Blockade	"GSE72056, GSE131928"
7863	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Map2	Post-mitotic neurons	NA	NA	31523028	Cell Stem Cell	Mitigating Antagonism between Transcription and Proliferation Allows Near-Deterministic Cellular Reprogramming	GSE134732
7864	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Prlr, Pgr, Cited1"	Hormone receptor (HR)+ luminal cells	NA	NA	31251913	Cell	"Inadequate DNA Damage Repair Promotes Mammary Transdifferentiation, Leading to BRCA1 Breast Cancer"	NA
7865	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"CD26, Dpp4, CD133, Prom1"	Luminal1	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7866	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	Trop2	Luminal2	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7867	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Wnt2, Wnt6, Wnt10a, RorB"	M1 macrophages	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7868	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mrc1, Arg1"	M2 macrophages	Cell line	NA	30245008	Cell	LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance	GSE118019
7869	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Rspo1, Fgf10, Sult1e1"	M2 macrophages	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7870	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Vil1, Mep1a, Clec2h, Lct, Cbr1, Ephx2"	Enterocytes	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7871	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Vil1, Mep1a, Clec2h, Lct, Cbr1, Ephx2"	Enterocytes	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7872	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Tph1, CcK, Chga, Chgb, Cpe"	Enteroendocrine cells	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7873	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Tph1, CcK, Chga, Chgb, Cpe"	Enteroendocrine cells	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7874	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Tff3, Manf, Muc2"	Goblet cells	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7875	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Tff3, Manf, Muc2"	Goblet cells	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7876	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col6a2, Col1a1, Col3a1, Dcn"	Stromal cells	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7877	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col6a2, Col1a1, Col3a1, Dcn"	Stromal cells	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7878	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mafb, H2Aa"	Mature TAM	Cell line	NA	30245008	Cell	LC3-Associated Phagocytosis in Myeloid Cells Promotes Tumor Immune Tolerance	GSE118019
7879	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Macrophages	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7880	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"C1qc, Apoe"	Tumor associated macrophages	NA	NA	32632238	Nat Methods	ZipSeq:barcoding for real-time mapping of single cell transcriptomes	GSE145502
7881	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	"VWF, GATA2"	Megakaryocyte_basophil progenitors	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7882	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"IRF8, LY86"	Monocyte progenitors	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7883	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"MPO, CTSG"	Neutrophil progenitors	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7884	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Itgam, Hp, Ly6c2, Msrb1, Chil3"	Neutrophils	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7885	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	CD4	CD4 T cells	Tissue	NA	32169218	Cell	Tumor-Derived Retinoic Acid Regulates Intratumoral Monocyte Differentiation to Promote Immune Suppression.	GSE144507
7886	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	CD8a	CD8 T cells	Tissue	NA	32169218	Cell	Tumor-Derived Retinoic Acid Regulates Intratumoral Monocyte Differentiation to Promote Immune Suppression.	GSE144507
7887	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Adgre1, Lyz2, Itgax"	Myeloid cells	Tissue	NA	32169218	Cell	Tumor-Derived Retinoic Acid Regulates Intratumoral Monocyte Differentiation to Promote Immune Suppression.	GSE144507
7888	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"CD3e, Nkg7"	Natural killer T (NKT) cells	Tissue	NA	32169218	Cell	Tumor-Derived Retinoic Acid Regulates Intratumoral Monocyte Differentiation to Promote Immune Suppression.	GSE144507
7889	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Trp63, Krt5, Krt14"	Basal cells	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7890	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	CD31	Endothelial cells	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7891	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"CD31, Prox1"	Lymphatic endothelial cells (LECs)	NA	NA	32355025	Science	Regenerative potential of prostate luminal cells revealed by single-cell analysis	NA
7892	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Phagocytes	"Ptprc, Cx3cr1, Fyb, Hck"	Phagocytes	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7893	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Phagocytes	"Ptprc, Cx3cr1, Fyb, Hck"	Phagocytes	Tissue	NA	31723262	Nature	Activity of caspase-8 determines plasticity between cell death pathways	GSE132134
7894	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7895	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Cd4, Foxp3"	CD4 T cells	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7896	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	Cd8a	CD8 T cells	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7897	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Siglech, Cd209a"	Plasmacytoid DCs	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7898	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Ccr7	Migratory DCs	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7899	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	Cma1	Mast cells	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7900	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Ms4a4c	Monocytes	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7901	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7902	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	Sparc	Stromal cells	Tissue	NA	32451497	Nat Med	Common germline variants of the Human APOE gene modulate melanoma progression and survival	NA
7903	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"EBF1, CD19, TRBC1"	Preb and T cell progenitors	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7904	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Cxcl9	CD45 cells	NA	NA	32640238	Cell Rep	Baseline Frequency of Inflammatory Cxcl9-Expressing Tumor-Associated Macrophagess Predicts Response to Avelumab Treatment	GSE150970
7905	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Cd38	Myeloid cells	NA	NA	32640238	Cell Rep	Baseline Frequency of Inflammatory Cxcl9-Expressing Tumor-Associated Macrophagess Predicts Response to Avelumab Treatment	GSE150970
7906	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"CD74, H2-AA, H2-EB1"	Dendritic progenitors	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7907	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	DNTT	Lymphoid progenitors	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7908	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"CTLA2A, HLF, CD34"	Stem cells	NA	NA	32641586	JCI Insight	Selective LXR agonist DMHCA corrects retinal and bone marrow dysfunction in type 2 diabetes	NA
7909	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Fap, Pdpn"	Cancer associated fibroblasts (CAFS)	Tissue	NA	33298926	Nat commun	TGFbeta-blockade uncovers stromal plasticity in tumors by revealing the existence of a subset of interferon-licensed fibroblasts	GSE160687
7910	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	NA	33298926	Nat commun	TGFbeta-blockade uncovers stromal plasticity in tumors by revealing the existence of a subset of interferon-licensed fibroblasts	GSE160687
7911	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Thy1, Fap"	Mesenchymal cells	Tissue	NA	33298926	Nat commun	TGFbeta-blockade uncovers stromal plasticity in tumors by revealing the existence of a subset of interferon-licensed fibroblasts	GSE160687
7912	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Syngr2, Cd209a, Ccr2"	Monocyte-derived dendritic cells	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7913	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Itgam, Ccr2, Tgfbi, Fcgr2b"	Monocytes	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7914	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Klra7, Klre1"	Natural killer (NK) cells	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7915	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col3a1, Sparc"	Stromal cells	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7916	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Cd3e, Cd3g, Thy1, Cd8a, Cd4, Ikzf2"	T lymphocytes	Tissue	NA	33301708	cell	Obesity Shapes Metabolism in the Tumor Microenvironment to Suppress Anti-Tumor Immunity	GSE160687
7917	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"CTIP2, TBR1"	Deeper layer neuron	Tissue	Neocortex	33053360	Cell Rep	LRIG1-Mediated Inhibition of EGF Receptor Signaling Regulates Neural Precursor Cell Proliferation in the Neocortex	"GSE107122, GSE152281"
7918	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nsc	"Prom1, Gfap"	Nsc	Tissue	Neocortex	33053360	Cell Rep	LRIG1-Mediated Inhibition of EGF Receptor Signaling Regulates Neural Precursor Cell Proliferation in the Neocortex	"GSE107122, GSE152281"
7919	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanoblasts	"Mitf, Pmel, Dct"	Melanoblasts	Tissue	Neural crest	31171666	Science	Spatiotemporal structure of cell fate decisions in murine neural crest.	GSE129114
7920	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural tube cells	"Olig3, FoxB1"	Neural tube cells	Tissue	Neural crest	31171666	Science	Spatiotemporal structure of cell fate decisions in murine neural crest.	GSE129114
7921	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Placodal cranial sensory ganglia	Phox2b	Placodal cranial sensory ganglia	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7922	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	"Sox9, Foxd3, Ets1"	Premigratory neural crest	Tissue	Neural crest	31171666	Science	Spatiotemporal structure of cell fate decisions in murine neural crest.	GSE129114
7923	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuronal cells	"Sox9, Foxd3, Ets1"	Premigratory neural crest	Tissue	Neural crest	31171666	Science	Spatiotemporal structure of cell fate decisions in murine neural crest.	GSE129114
7924	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Tubb3high, Elavl4"	Bipotent progenitors	Tissue	Neural crest	31442438	Gastroenterology	"Activation of Hedgehog Signaling Promotes Development of Mouse and Human Enteric Neural Crest Cells, Based on Single-Cell Transcriptome Analyses"	NA
7925	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Mpz, Fabp7, Zfp488, Plp1, Sox10"	Early glial cells	Tissue	Neural crest	31171666	Science	Spatiotemporal structure of cell fate decisions in murine neural crest.	GSE129114
7926	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Emcn, Ecscr, Cdh5"	Blood vessel-derived endothelial cells	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7927	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prdm12	Jugular neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7928	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prdm12	Jugular neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7929	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prdm12	Jugular neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7930	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prdm12	Jugular neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7931	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prdm12	Jugular neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7932	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prdm12	Jugular neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7933	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Prdm12	Jugular neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7934	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tubb3, Snap25, Uchl1"	Neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7935	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a6	Peripheral sensory neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7936	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Hand2, Tbx20, Ecel1"	Sympathetic neurons	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7937	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Fabp7, Plp1, Sox10"	Glial progenitors	Tissue	Neural crest	31442438	Gastroenterology	"Activation of Hedgehog Signaling Promotes Development of Mouse and Human Enteric Neural Crest Cells, Based on Single-Cell Transcriptome Analyses"	NA
7938	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Prrx1, Twist1"	Mesenchymal cells	Tissue	Neural crest	31171666	Science	Spatiotemporal structure of cell fate decisions in murine neural crest.	GSE129114
7939	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Foxd3, Sox9, Sox10, Ets1"	Neural crest cells	Tissue	Neural crest	31171666	Science	Spatiotemporal structure of cell fate decisions in murine neural crest.	GSE129114
7940	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Acta2, Actg2, Tagn, Hand1, Snail2, Sox10"	Neural crest cells	Tissue	Neural crest	31442438	Gastroenterology	"Activation of Hedgehog Signaling Promotes Development of Mouse and Human Enteric Neural Crest Cells, Based on Single-Cell Transcriptome Analyses"	NA
7941	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Apoe, Fabp7, Dbi"	Satellite glial cells	Tissue	Neural crest	31116992	Cell Rep	An Atlas of Vagal Sensory Neurons and Their Molecular Specialization	GSE124312
7942	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tissue retention	"Itgal, Itga4"	Tissue retention	Tissue	Neurogenic niche	31270459	Nature	Single-cell analysis reveals T cell infiltration in old neurogenic niches	NA
7943	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd62l, Cd44"	Memory cells	Tissue	Neurogenic niche	31270459	Nature	Single-cell analysis reveals T cell infiltration in old neurogenic niches	NA
7944	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd69, Xcl1"	Activated T cells	Tissue	Neurogenic niche	31270459	Nature	Single-cell analysis reveals T cell infiltration in old neurogenic niches	NA
7945	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fenestrated vascular endothelia	"Emcn, Flt1, Plvap"	Fenestrated vascular endothelia	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7946	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fenestrated vascular endothelia	"Emcn, Flt1, Plvap"	Fenestrated vascular endothelia	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7947	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Il cells	"Pomc, Pcsk2"	Il cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7948	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Il cells	"Pcsk2, Scg2, Chga"	Il cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7949	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Il cells	"Pomc, Pcsk2"	Il cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7950	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Il cells	"Pcsk2, Scg2, Chga"	Il cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7951	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular leptomeningeal cells	"Ogn, Lum, Dcn"	Vascular leptomeningeal cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7952	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Apoe	Astrocytes	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7953	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Apoe	Astrocytes	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7954	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Krt8, Clu"	Epithelial cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7955	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt18, Krt8, Clu"	Epithelial cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7956	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	"Vegfa, Gja1"	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7957	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	"Col25a1, Scn7a, Srebf1"	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7958	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	Apoe	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7959	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	"Gja1, Cx43, Vegfa, Vim"	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7960	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	Col25a1	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7961	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	"Vegfa, Gja1"	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7962	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	"Col25a1, Scn7a, Srebf1"	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7963	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	Apoe	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7964	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	"Gja1, Cx43, Vegfa, Vim"	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7965	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pituitary cells	Col25a1	Pituitary cells	Tissue	Neurohypophysis	31915267	ENEURO	Single-Cell Molecular and Cellular Architecture of the Mouse Neurohypophysis	GSE135704
7966	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatoblasts	Sall4	Hepatoblasts	Organoids	Olfactory bulb	32661426	Nat Methods	Investigating higher-order interactions in single-cell data with scHOT	"GSE87795, GSE90047, GSE96981"
7967	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myelinating-oligodendrocyte-based	Mag	Myelinating-oligodendrocyte-based	Tissue	Olfactory bulb	30517858	Cell Rep	Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons	GSE121891
7968	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Olfactory ensheathing cell-based	Sox10	Olfactory ensheathing cell-based	Tissue	Olfactory bulb	30517858	Cell Rep	Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons	GSE121891
7969	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Blood cells	Slco1c1 Pdgfrb	Blood-vessel-based	Tissue	Olfactory bulb	30517858	Cell Rep	Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons	GSE121891
7970	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cholangiocytes	Epcam	Cholangiocytes	Organoids	Olfactory bulb	32661426	Nat Methods	Investigating higher-order interactions in single-cell data with scHOT	"GSE87795, GSE90047, GSE96981"
7971	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Gfap	Astrocytes	Tissue	Olfactory bulb	30517858	Cell Rep	Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons	GSE121891
7972	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Syt1, Tubb3"	Neurons	Tissue	Olfactory bulb	30517858	Cell Rep	Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons	GSE121891
7973	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Olig2	Oligodendrocyte precursors	Tissue	Olfactory bulb	30517858	Cell Rep	Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons	GSE121891
7974	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	"Aif1, Siglich, CD52, CD74, Hba a1"	Hematopoietic cells	Tissue	Olfactory bulb	30517858	Cell Rep	Single-Cell RNA-Seq of Mouse Olfactory Bulb Reveals Cellular Heterogeneity and Activity-Dependent Molecular Census of Adult-Born Neurons	GSE121891
7975	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hepatocytes	Ahsg	Hepatocytes	Organoids	Olfactory bulb	32661426	Nat Methods	Investigating higher-order interactions in single-cell data with scHOT	"GSE87795, GSE90047, GSE96981"
7976	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	Ascl1	Globose basal cell	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7977	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immediate neuronal precursor (inp)	"Neurog1, Neurod1"	Immediate neuronal precursor (inp)	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7978	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Omp, Gnal"	Mature olfactory sensory neuron (mosn)	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7979	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microvillous cell (mv)	"Coch, Ascl3, Cftr, Sox9, Trpm5"	Microvillous cell (mv)	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7980	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ms4a-expressing chemosensory receptor cell (ms4)	"Ms4a4c, Ms4a6c, Ms4a7"	Ms4a-expressing chemosensory receptor cell (ms4)	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7981	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sustentacular cells	"Cyp2g1, Cyp1a2"	Sustentacular cells	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7982	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Krt5, Trp63, Krt14"	Horizontal basal cells	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7983	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Gap43	Immature olfactory sensory neuron (iosn)	Tissue	Olfactory epithelia	30482691	Neuron	A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period	GSE120199
7984	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoclasts	"Acp5, Ctsk, Mmp9, Nfatc1, Dcstamp, Atp6v0d2"	Mature osteoclasts	Cell line	Osteoclast	33288951	Nature Metabolism	Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution	GSE147174.
7985	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a8, S100a9, Camp, Ngp"	Neutrophils	Cell line	Osteoclast	33288951	Nature Metabolism	Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution	GSE147174.
7986	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Tnfrsf11a, Csf1r, Cx3cr1"	Osteoclast precursors	Cell line	Osteoclast	33288951	Nature Metabolism	Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution	GSE147174.
7987	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Igkc, Ighm, Iglc1, Iglc3"	B cells	Cell line	Osteoclast	33288951	Nature Metabolism	Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution	GSE147174.
7988	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Megakaryocytes	Pf4	Megakaryocytes	Cell line	Osteoclast	33288951	Nature Metabolism	Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution	GSE147174.
7989	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Col1a1, Col1a2, Sparc"	Mesenchymal cells	Cell line	Osteoclast	33288951	Nature Metabolism	Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution	GSE147174.
7990	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Vcam1, C1qa, Cd5l, C1qc"	Vcam1 macrophages	Cell line	Osteoclast	33288951	Nature Metabolism	Stepwise cell fate decision pathways during osteoclastogenesis at single-cell resolution	GSE147174.
7991	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Non-ovulatory gcs	"FoxI2, Esr2"	Non-ovulatory gcs	Tissue	Ovary	32294429	Cell Rep	Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation	GSE145107
7992	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ovulatory cumulus gcs	Ube2c	Ovulatory cumulus gcs	Tissue	Ovary	32294429	Cell Rep	Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation	GSE145107
7993	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ovulatory mural gcs	"Pgr, Snap25"	Ovulatory mural gcs	Tissue	Ovary	32294429	Cell Rep	Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation	GSE145107
7994	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulosa cells	"Wnt4, Wnt6, Kitl, Foxl2"	Pre-granulosa cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
7995	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Theca cells	Cyp17a1	Theca cells	Tissue	Ovary	32294429	Cell Rep	Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation	GSE145107
7996	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"HLA-, DR, CD11c, CD1c, CD16"	Dendritic cells	Tissue	Ovary	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
7997	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"FCN1, S100A9, VCAN, FCGR1A, FCGR1B, CD1C, FCER1A, IFITM2, CLEC10A, FCGR2B."	Monocyte-related genes and DC genes	Tissue	Ovary	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
7998	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"FCN1, S100A9, VCAN, FCGR1A, FCGR1B, CD1C, FCER1A, IFITM2, CLEC10A, FCGR2B."	Monocyte-related genes and DC genes	Tissue	Ovary	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
7999	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"CCR7, LAMP3, CCL19, MARCKSL1, CD83, IDO1."	DC activation genes	Tissue	Ovary	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8000	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Utf1, Pou5f1, Hist1h2ap"	Premeiotic germ cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8001	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Stra8"	Preleptotene (Pre-L) cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8002	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Stra8, Rec8"	Leptotene cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8003	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Sycp2, Syce3"	Zygotene cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8004	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Msh4, Mlh3, Ybx2"	Pachytene	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8005	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Topaz1, Sycp2, Ybx2, Gtsf1, Sycp3, Taf71"	Diplotene	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8006	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Sycp2l, Gtsf1, Sycp3, Taf71"	Dictyate	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8007	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Ddx4, Dazl, Sycp3, Taf71, Syce3"	Dying	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8008	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Interstitial cells	"Col1a1, Mgp"	Interstitial cells	Tissue	Ovary	32294429	Cell Rep	Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation	GSE145107
8009	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Icam2	Endothelial cells	Tissue	Ovary	32294429	Cell Rep	Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation	GSE145107
8010	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Ptprc	Immune cells	Tissue	Ovary	32294429	Cell Rep	Progesterone Receptor Serves the Ovary as a Trigger of Ovulation and a Terminator of Inflammation	GSE145107
8011	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Car2, Lcn2, Cx3cr1"	Endothelial cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8012	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Upk3b, Krt19"	Epithelial cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8013	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Nr2f2, Col1a1"	Mesenchymal cells	Tissue	Ovary	32759216	Proc Natl Acad Sci U S A	Two distinct pathways of pregranulosa cell differentiation support follicle formation in the mouse ovary	GSE136441
8014	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cancer cells	"Krt18, Sox9"	Cancer cells	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8015	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Alpha cells	"NeuroD1, Arx"	Early-stage alpha cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115931
8016	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Entericneuron	Ascl1	Entericneuron	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115931
8017	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Eps	"Ngn3, Hes6"	Eps	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8018	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Extrahepaticbile ductal cells	Sox17	Extrahepaticbile ductal cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115931
8019	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fev-expressing cells	"Pax4, Runx1, Runx1t1, Ngn3"	First group	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8020	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fev-expressing cells	"Chgb, Vim"	Second group	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8021	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fevhigh	"Fev, Cck, Neurod1"	Fevhigh	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8022	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Insulin cells	"Amylase, Prss1, Ptf1a"	Acinar cell	Tissue	Pancreas	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
8023	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	"Lrrn4, Gpm6a, Nkain4, Lgals7, Msln"	Mesothelial cells	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8024	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesothelial cells	"Upk3b, Lrrn4"	Mesothelial cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8025	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Metaplastic cells	Sox9	Metaplastic cells	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8026	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mpcs	Dlk1	Mpcs	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8027	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mtc	"Dclk1, Vav1, Pou2f3, Cxcl1, Cxcl2"	Mtc	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8028	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd177, Cxcr2, Mmp8, Arg2, Itgamhi"	Myeloid-derived suppressor cells (mdsc)	Tissue	Pancreas	32142650	Nat Immunol	PD-L1 engagement on T cells promotes self-tolerance and suppression of neighboring macrophages and effector T cells in cancer	GSE145905
8029	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Mmp9, Il1r2, Il1b"	MMDSCs	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8030	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Retnlg, Osm, Wfdc17"	GMDSCs	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8031	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Ptprc, Cd14, Itgam, Cxcr2"	Myeloid-derived suppressor cells (mdsc)	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8032	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"Sst, Hhex, Pdx1"	Pancreatic delta cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8033	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"DBA lectin, CD133"	Pancreatic ductal cells	Tissue	Pancreas	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
8034	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"Sox9, Krt19"	Pancreatic ductal cells	Tissue	Pancreas	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
8035	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"CD9, Onecut2"	Pancreatic ductal cells	Tissue	Pancreas	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
8036	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"Prox1, Pdx1"	Pancreatic epithelial lineage cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115936
8037	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"Ppy, Mafbneg, Spp1"	Pancreatic peptide-producing cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8038	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"Pdgfra, Pdgfrb"	Pancreatic stellate cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8039	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pancreatic cell	"Sox9, Nkx6-1, Mucin-1, EpCAM, E-Cadherin"	Pancreatic tubular epithelium	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8040	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pdc	Siglech	Pdc	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8041	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Perivascular cells	"Pecam1, Cdh5, Lgfbp7, Cxcl12"	Perivascular 1	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8042	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Perivascular cells	"Lgfbp7, Rgs5, Fdgfrb"	Perivascular 2	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8043	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	"Top2a, Mki67"	Proliferating cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8044	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD4, hCD2_"	T helper cell	Organoids	Pancreas	30236153	Genome Med	Single-cell transcriptomics reveal that PD-1 mediates immune tolerance by regulating proliferation of regulatory T cells.	NA
8045	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tam	"Ptprc, H2-Ab1, Itgam, Cd14"	Tam	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8046	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tip cells	"Ptf1a, Rbpjl, Cpa1"	Tip cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115931
8047	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tip cells	"Cpa1, Myc"	Tip cells	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8048	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Krt8, Krt18"	PEMT tumor cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8049	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Crabp1, Crabp2"	EMT tumor cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8050	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Beta cells	"Ins1, Ins2, Slc2a2, Nkx6-1, Pdx1, Mafa"	Beta cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8051	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Beta cells	"Ins1, Ins2, Pdx1, Iapp, Nnat, Ppp1r1a"	Beta cells	Tissue	Pancreas	30540962	Stem Cell Reports	Single-Cell Transcriptome Profiling of Mouse and hESC-Derived Pancreatic Progenitors	GSE120522
8052	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Beta cells	Ins1	Beta cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115933
8053	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Beta cells	"Pdx1, Cdh1, Ctrb1, Pnliprp1, Neurog3, Sox9, Ins2, Gcg, Sst"	Beta cells	Tissue	Pancreas	31412250	Cell Rep	TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation	GSE134184
8054	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Ins2	Beta/endocrine cell	Tissue	Pancreas	32165492	Development	Role of nutrient-driven O-GlcNAc-post-translational modification in pancreatic exocrine and endocrine islet development	GSE131134
8055	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	CD31	Endothelial cells	Tissue	Pancreas	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
8056	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Blood cells	Tie2	Blood cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115931
8057	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"H2-Oa, Flt3"	CDC	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8058	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD4, hCD2"	Regulatory T cells (Treg)	Organoids	Pancreas	30236153	Genome Med	Single-cell transcriptomics reveal that PD-1 mediates immune tolerance by regulating proliferation of regulatory T cells.	NA
8059	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8060	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Cdh1	Epithelial cells	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8061	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Rac2	Immune cells	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8062	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Col3a1, Col1a1, Wt1, Krt19, Upk3b"	Mesothelial cells	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8063	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Col3a1, Col1a1, Acta2, Tagln, Myl9"	VSM cells	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8064	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Col3a1, Col1a1, Stmn2, Mgp"	Cluster 2	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8065	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Col3a1, Col1a1, Ace2, Figf"	Cluster 4	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8066	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Col3a1, Col1a1, Barx1, Id2"	Cluster 5	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8067	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Col3a1, Col1a1, Nkx2-5, Tlx1"	Cluster 9	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8068	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	"Amy2b, Cpa1, Ptf1a"	Acinar cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8069	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5, Kdr"	Endothelial cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8070	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Ptprc	Immune cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8071	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"PDGFR, PDPN, Il1a, Il6, Lif, Cxcl1, Csf3"	Cancer associated fibroblasts (CAFS)	Tissue	Pancreas	30366930	Cancer Discov	IL1-Induced JAK/STAT Signaling Is Antagonized by TGFbeta to Shape CAF Heterogeneity in Pancreatic Ductal Adenocarcinoma	GSE114417
8072	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"PDGFR, PDPN, Acta2, Ctgf"	Cancer associated fibroblasts (CAFS)	Tissue	Pancreas	30366930	Cancer Discov	IL1-Induced JAK/STAT Signaling Is Antagonized by TGFbeta to Shape CAF Heterogeneity in Pancreatic Ductal Adenocarcinoma	GSE114417
8073	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	Tissue	Pancreas	30366930	Cancer Discov	IL1-Induced JAK/STAT Signaling Is Antagonized by TGFbeta to Shape CAF Heterogeneity in Pancreatic Ductal Adenocarcinoma	GSE114417
8074	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Islet cells	"Gcg, Arx"	Differentialed islet alpha cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115932
8075	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ductal cells	"Krt19, Hnf1b"	Ductal cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8076	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ductal cells	Cre recombinase	Ductal cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115935
8077	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ductal cells	"Sox9, Anxa2, Bicc1"	Ductal cells	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8078	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ductal cells	"Krt18, Sox9"	Ductal cells	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8079	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ductal cells	Dclk1	Ductal cells	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8080	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	"Rbpjl, Ptf1a"	Acinar cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115934
8081	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Col3a1	Mesenchymal cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115931
8082	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Trunk cells	"Sox9, Nkx6.1, Hes1"	Trunk cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115932
8083	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Chga	Endocrine cells	Tissue	Pancreas	30254276	Nat Commun	Lineage dynamics of murine pancreatic development at single-cell resolution.	GSE101099
8084	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	"Rbp4, Pyy, Chgb"	Endocrine cells	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8085	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	"Pdx1, Cdh1, Ctrb1, Pnliprp1, Sst, Cpa1, Myc, Nr5a2, Ptf1a, Sox9, Neurog3, Neurod1, Gcg, Ins2"	Endocrine cells	Tissue	Pancreas	31412250	Cell Rep	TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation	GSE134184
8086	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Ggc	Endocrine cells	Tissue	Pancreas	32165492	Development	Role of nutrient-driven O-GlcNAc-post-translational modification in pancreatic exocrine and endocrine islet development	GSE131134
8087	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	"Arx, Pax6, Neurod1"	Endocrine cells	Tissue	Pancreas	32165492	Development	Role of nutrient-driven O-GlcNAc-post-translational modification in pancreatic exocrine and endocrine islet development	GSE131134
8088	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	Ngn3	Endocrine precursors	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115933
8089	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	"Neurog3, Pax4, Sox4, Mdk, Gadd45a"	Endocrine progenitors	Tissue	Pancreas	30540962	Stem Cell Reports	Single-Cell Transcriptome Profiling of Mouse and hESC-Derived Pancreatic Progenitors	GSE120522
8090	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	"Pdx1, Cdh1, Ctrb1, Pnliprp1, Sst, Cpa1, Myc, Nr5a2, Ptf1a, Sox9, Neurog3, Neurod1, Gcg, Ins2"	Endocrine progenitors	Tissue	Pancreas	31412250	Cell Rep	TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation	GSE134184
8091	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Hgf, Twist, Zeb1, Slug, Etv1, Postn, Vim, Tnc"	Epithelial mesenchymal transition	NA	Pancreas	33007300	Gastroenterology	Mesenchymal Plasticity Regulated by Prrx1 Drives Aggressive Pancreatic Cancer Biology	GSE93313
8092	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	"Ptf1a, Cpa1, Cel, Rbpjl"	Acinar cells	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8093	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Trunk cells	Notch2	Trunk cells	Tissue	Pancreas	31160421	Development	Comprehensive single cell mRNA profiling reveals a detailed roadmap for pancreatic endocrinogenesis.	NA
8094	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Cdh1, Epcam, Gjb1, Cldn3, Tjb1, Ocln"	Epithelial cells	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8095	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Cdh11	Fibroblasts	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8096	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Cdh2, Cd44, Axl, Vim, S100a4, Fbln2"	Mesenchymal cells	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8097	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myofibroblasts	"Acta2, Tagln"	Myofibroblasts	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8098	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Islet cells	"Gcg, Mafb, Arx"	Islet alpha cells	Tissue	Pancreas	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8099	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Islet cells	"Gcg, Slc38a5, Ttr"	Islet alpha cells	Tissue	Pancreas	30540962	Stem Cell Reports	Single-Cell Transcriptome Profiling of Mouse and hESC-Derived Pancreatic Progenitors	GSE120522
8100	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Islet cells	"Pdx1, Cdh1, Ctrb1, Pnliprp1, Neurog3, Sox9, Ins2, Gcg, Sst"	Islet alpha cells	Tissue	Pancreas	31412250	Cell Rep	TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation	GSE134184
8101	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	"Pdx1, Cdh1, Ctrb1, Pnliprp1, Neurog3, Sox9, Ins2, Gcg, Sst"	Acinar cells	Tissue	Pancreas	31412250	Cell Rep	TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation	GSE134184
8102	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	"Pdx1, Cdh1, Ctrb1, Pnliprp1, Sst, Cpa1, Myc, Nr5a2, Ptf1a, Sox9, Neurog3, Neurod1, Gcg, Ins2"	Acinar progenitors	Tissue	Pancreas	31412250	Cell Rep	TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation	GSE134184
8103	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocrine cells	"NeuroD1, Pax6"	Late-stage endocrine precursor cells	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115934
8104	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Cd68, Csf1r, Fcgr1, Adgre1, Itgam"	CD68 Macrophages	Tissue	Pancreas	32142650	Nat Immunol	PD-L1 engagement on T cells promotes self-tolerance and suppression of neighboring macrophages and effector T cells in cancer	GSE145905
8105	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Cx3cr1, Adgre1, Arg1, Itgam"	CX3CR1 Macrophages	Tissue	Pancreas	32142650	Nat Immunol	PD-L1 engagement on T cells promotes self-tolerance and suppression of neighboring macrophages and effector T cells in cancer	GSE145905
8106	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Fcgr1	Macrophages	Tissue	Pancreas	30737258	EMBO J	Defining multistep cell fate decision pathways during pancreatic development at single-cell resolution	GSE115931
8107	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Arg1	M2 macrophages	Tissue	Pancreas	31335328	JCI Insight	Cellular heterogeneity during Mouse pancreatic ductal adenocarcinoma progression at single-cell resolution	GSE125588
8108	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Pf4, Ccl2, Arg1"	Mac_s1	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8109	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	"Pnlip, Cpa1"	Acinar cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8110	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Ly6c1, Pi16"	Cancer associated fibroblasts (CAFS)	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8111	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Serpine2, Gpx3"	Cancer associated fibroblasts (CAFS)	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8112	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Tagln, Cthrc1"	Cancer associated fibroblasts (CAFS)	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8113	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Cxcl1, Has1"	Cancer associated fibroblasts (CAFS)	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8114	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Esam"	Endothelial cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8115	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Tmem100, Dpp4"	Fibroblasts	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8116	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Smoc2, Col15a1"	Fibroblasts	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8117	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"C1gb, Csf1r"	Myeloid cells	Tissue	Pancreas	31699795	Cancer Discov	Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy	"GSE103322, GSE129455( download)"
8118	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mrc1, Cd274"	Mac_s2	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8119	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Plac8, Fas, Ms4a4c, Ly6i, Cd9"	Mac_s3	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8120	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Emr1, C1qa"	Macrophages	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8121	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD68, CD163, MRC1, CD207, Apoe, Lyz2, Arg1"	Macrophages	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8122	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	NA	"Lag3, Pdcd1 (PD-1), Ctla4, Icos"	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8123	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	NA	"CD44, Cd200, Ccr7"	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8124	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Ly6c2, Mx1, Ifit2"	CD8_s2	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8125	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Sell, Fam101b, Ccr7"	CD8_s3	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8126	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Pim3, Ing2"	CD8_s4	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8127	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Gzmk, Tox"	CD8_s5	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8128	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Gzmc, Gzmd, Prf1, Gzmf"	CD8_s6	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8129	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Serpinb1a, Il18r1, Cxcr3"	CD8_s7	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8130	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Apoe, C1qa, C1qc, Lgmn"	CD8_s8	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8131	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	Try4	Acinar cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8132	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd79a	B cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8133	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Krt19	Epithelial cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8134	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Pdgfra	Fibroblasts	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8135	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Itgam, Cd14, Fcgr3, S100a8, Ly6g"	MDSCs	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8136	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Cd68, Adgre1, Mrc1"	Macrophages	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8137	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Itgax, H2-Eb1, Batf3, Itgae, Clec9a"	Dendritic cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8138	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Itgax, Ly6c2"	Monocytes	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8139	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ptprc, Nkg7"	Natural killer (NK) cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8140	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Pdx1, Cdh1, Ctrb1, Pnliprp1, Sst, Cpa1, Myc, Nr5a2, Ptf1a, Sox9, Neurog3, Neurod1, Gcg, Ins2"	Multipotent or bipotent progenitors	Tissue	Pancreas	31412250	Cell Rep	TrxG Complex Catalytic and Non-catalytic Activity Play Distinct Roles in Pancreas Progenitor Specification and Differentiation	GSE134184
8141	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"EPCAM, KRT19, SPP1, CFTR"	Exocrine cells	Tissue	Pancreas	31932696	Nature Genetics	Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution	EGAS00001002543.
8142	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"EPCAM, KRT19, GCG, INS"	Endocrine cells	Tissue	Pancreas	31932696	Nature Genetics	Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution	EGAS00001002543.
8143	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"THY1, ACTA2"	Fibroblasts	Tissue	Pancreas	31932696	Nature Genetics	Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution	EGAS00001002543.
8144	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"PTPRC, CD33"	Immune cells	Tissue	Pancreas	31932696	Nature Genetics	Transcription phenotypes of pancreatic cancer are driven by genomic events during tumor evolution	EGAS00001002543.
8145	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79a, Cd79b"	B cells	Tissue	Pancreas	32142650	Nat Immunol	PD-L1 engagement on T cells promotes self-tolerance and suppression of neighboring macrophages and effector T cells in cancer	GSE145905
8146	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"MHCII, Batf3, H2-Ab1, Cd74"	Batf3 MHCII+ DC	Tissue	Pancreas	32142650	Nat Immunol	PD-L1 engagement on T cells promotes self-tolerance and suppression of neighboring macrophages and effector T cells in cancer	GSE145905
8147	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"MHCII, Itgae, Ab1"	CD103 MHCII+ DC	Tissue	Pancreas	32142650	Nat Immunol	PD-L1 engagement on T cells promotes self-tolerance and suppression of neighboring macrophages and effector T cells in cancer	GSE145905
8148	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	Amy1	Acinar cells	Tissue	Pancreas	32165492	Development	Role of nutrient-driven O-GlcNAc-post-translational modification in pancreatic exocrine and endocrine islet development	GSE131134
8149	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b"	B cells	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8150	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Kdr, Pecam1"	Endothelial cells	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8151	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Pdgfrb, Pdgfa"	Mesenchymal cells	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8152	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Krt19	Pancreatic ductal epithelial cells	Tissue	Pancreas	29550076	Mol Ther	Long-Term Correction of Diabetes in Mouse by In Vivo Reprogramming of Pancreatic Ducts	GSE109113
8153	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	Tnfrsf4	CD4 T cells	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8154	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Ccl5, Cd8b1, Gzmk"	CD8 T cells	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8155	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Cstb, Zeb2, Hilpda"	Granulocytes	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8156	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cox8a, Ostf1"	Non-conventional Monocytes	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8157	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Clu	Monocytes	Tissue	Pancreas	32324594	JCI insight	CCL5 mediates CD40-driven CD4+ T cell tumor infiltration and immunity	GSE150176
8158	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	Igj	Plasma cells	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8159	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD4, FoxP3"	Treg	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8160	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd4, Gzmb, Klrg1"	Treg_s2	Tissue	Pancreas	31771616	J Hematol Oncol	Single-cell RNA sequencing reveals compartmental remodeling of tumorinfiltrating immune cells induced by antiCD47 targeting in pancreatic cancer	NA
8161	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ptprc, Cd3e, Cd4, Foxp3"	Regulatory T cells (Treg)	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8162	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ptprc, Cd3e, Cd4, Foxp3"	Regulatory T cells (Treg)	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8163	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	Spink1	Acinar cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8164	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"H2-Ab1, Ma4a1, Cd79a, Ptprc"	B cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8165	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Ptprc, Cd3e, Cd4"	CD4 T cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8166	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Ptprc, Cd3e, Nkg7, Cd8a"	CD8 T cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8167	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ptprc, Cd3e, Lyz2, Cd19, Itgax, Itgam"	SubTypes1	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8168	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ptprc, Cd3e, Lyz2, Cd19, Itgax, Batf3"	SubTypes2	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8169	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5, Lgfbp7"	Endothelial cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8170	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt8, Krt19, Lgfbp7, Col1a1"	Epithelial cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8171	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Lgfbp7, Colla1"	Icancer-associated fibroblasts	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8172	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Lgfbp7, Colla1, Acta2, Nc8m1"	Mycancer-associated fibroblasts	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8173	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ptprc, Nkg7"	Natural killer (NK) cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8174	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	"Dclk1, Vav1, Pou2f3"	Tuft cells	Tissue	Pancreas	32882403	Cell Mol Gastroenterol Hepatol	The Gustatory Sensory G-Protein GNAT3 Suppresses Pancreatic Cancer Progression in Mouse	NA
8175	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	Reg	Acinar cells	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8176	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	Il18r1	CD4 T cells	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8177	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Dclk1	Fibroblasts	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8178	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"C3, Tnf, Cxcl2, Fosl1, Il1rn, Ltb"	Immune cells	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8179	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Il18r1	Natural killer (NK) cells	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8180	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19, Sox9"	Stomach epithelial cells	Tissue	Pancreas	32908137	Nat Commun	Single-cell transcriptomes of pancreatic preinvasive lesions and cancer reveal acinar metaplastic cells heterogeneity	GSE141017
8181	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Zo1, Sox17"	Epithelial cells	NA	Pancreas	32976774	Cancer Cell	Cholesterol Pathway Inhibition Induces TGF-beta Signaling to Promote Basal Differentiation in Pancreatic Cancer	GSE156210
8182	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Vim, Zeb2, Nes"	Mesenchymal cells	NA	Pancreas	32976774	Cancer Cell	Cholesterol Pathway Inhibition Induces TGF-beta Signaling to Promote Basal Differentiation in Pancreatic Cancer	GSE156210
8183	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Ptprc, Cd3e, Cd4"	CD4+ T cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8184	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Ptprc, Nkg7, Cd3e, Cd8a"	CD8+ T cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8185	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	CD4- T cells CD8- T cells	Tissue	Pancreas	31911451	Cancer Discov	Regulatory T cell depletion alters the tumor microenvironment and accelerates pancreatic carcinogenesis.	GSE 140628
8186	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3g, Cd3d, Cd3e, Cd8ah, CD103"	T cells	Tissue	Pancreas	32142650	Nat Immunol	PD-L1 engagement on T cells promotes self-tolerance and suppression of neighboring macrophages and effector T cells in cancer	GSE145905
8187	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3e, Cd3g"	T cells	Tissue	Pancreas	32251514	J Exp Med	Single-cell RNA sequencing of murine islets shows high cellular complexity at all stages of autoimmune diabetes.	GSE141786
8188	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sheath cells	"Tppp3, Prg4"	Sheath cells	Tissue	Patellar tendon	31768046	Nature Cell Biology	A Tppp3+Pdgfra+ tendon stem cell population contributes to regeneration and reveals a shared role for PDGF signalling in regeneration and fibrosis	PRJNA506218.
8189	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Telocytes	"Fmod, Tnmd, Thbs4"	Telocytes	Tissue	Patellar tendon	31768046	Nature Cell Biology	A Tppp3+Pdgfra+ tendon stem cell population contributes to regeneration and reveals a shared role for PDGF signalling in regeneration and fibrosis	PRJNA506218.
8190	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Pdgfra, Ly6a"	Fibro-adipogenic progenitors	Tissue	Patellar tendon	31768046	Nature Cell Biology	A Tppp3+Pdgfra+ tendon stem cell population contributes to regeneration and reveals a shared role for PDGF signalling in regeneration and fibrosis	PRJNA506218.
8191	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"F4, F80"	Macrophages	Tissue	Patellar tendon	31768046	Nature Cell Biology	A Tppp3+Pdgfra+ tendon stem cell population contributes to regeneration and reveals a shared role for PDGF signalling in regeneration and fibrosis	PRJNA506218.
8192	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Patellar tendon	31768046	Nature Cell Biology	A Tppp3+Pdgfra+ tendon stem cell population contributes to regeneration and reveals a shared role for PDGF signalling in regeneration and fibrosis	PRJNA506218.
8193	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD19, CD5"	B1a B cells	Tissue	Peritoneum	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
8194	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD19, CD11b"	B1b B cells	Tissue	Peritoneum	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
8195	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD19	B2 B cells	Tissue	Peritoneum	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
8196	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Csf1r, Adgre1, Timd4, Gata6"	Tissueresident peritoneal macrophages	Tissue	Peritoneum	31959973	Nat Microbiol	Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes	GSE121521
8197	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Csf2r, Ccr2"	Monocytes	Tissue	Peritoneum	31959973	Nat Microbiol	Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes	GSE121521
8198	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Csf1r	Myeloid cells	Tissue	Peritoneum	31959973	Nat Microbiol	Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes	GSE121521
8199	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Csf2r	Myeloid cells	Tissue	Peritoneum	31959973	Nat Microbiol	Select autophagy genes maintain quiescence of tissue-resident macrophages and increase susceptibility to Listeria monocytogenes	GSE121521
8200	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cort	"Pome, Tbx19, Pax7"	Cort	Tissue	Pituitary	32193873	Protein Cell	Single-cell transcriptomic analysis of adult mouse pituitary reveals sexual dimorphism and physiologic demand-induced cellular plasticity	GSE146619
8201	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gona	"Pou1f1, Fshb, Lhb, Gnrhr"	Gona	Tissue	Pituitary	32193873	Protein Cell	Single-cell transcriptomic analysis of adult mouse pituitary reveals sexual dimorphism and physiologic demand-induced cellular plasticity	GSE146619
8202	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gonadotropes	Lhb	Gonadotropes	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8203	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gonadotropes	"Lhb, Gnrhr"	Gonadotropes	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8204	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lactotropes	Prl	Lactotropes	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8205	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lactotropes	Prl	Lactotropes	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8206	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lbetat2 cells	"Cga, Gnrhr, Lhb"	Lbetat2 cells	Cell line	Pituitary	29487567	Front Endocrinol (Lausanne)	Regulatory Architecture of the LbetaT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone	GSE102480
8207	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mel	"Pomc, Tbx19, Pax7"	Mel	Tissue	Pituitary	32193873	Protein Cell	Single-cell transcriptomic analysis of adult mouse pituitary reveals sexual dimorphism and physiologic demand-induced cellular plasticity	GSE146619
8208	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanotropes	"POMC, Pax7"	Melanotropes	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8209	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanotropes	Pomc	Melanotropes	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8210	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Sox2	Pituitary stem cells	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8211	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Posterior lobe	Nkx2.1	Posterior lobe	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8212	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	"Top2a, Mki67"	Proliferating cells	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8213	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Somatotropes	Gh	Somatotropes	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8214	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Somatotropes	Gh	Somatotropes	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8215	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thyrotropes	Tshb	Thyrotropes	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8216	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Corticotropes	POMC	Corticotropes	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8217	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Corticotropes	"Crhr1, Tbx19"	Corticotropes	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8218	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Corticotropes	"Crhr1, Tbx19"	Corticotropes	Tissue	Pituitary	33373440	Endocrinology	Control of the Anterior Pituitary Cell Lineage Regulator POU1F1 by the Stem Cell Determinant Musashi	GSE153045
8219	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Plvap	Endothelial cells	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8220	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Sox2	Stem cells	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8221	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	C1qa	Macrophages	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8222	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Dcn	Pericytes	Organoids	Pituitary	31444346	Nat Commun	Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening	GSE125671
8223	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Pituitary	32515782	J Exp Med	BACH2 drives quiescence and maintenance of resting Treg cells to promote homeostasis and cancer immunosuppression	GSE128176
8224	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Connective tissue	Col1a1	Connective tissue	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8225	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gonadotropes	"Lhb, Fshb"	Gonadotropes	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8226	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lactotropes	Prl	Lactotropes	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8227	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanotropes	Pomc	Melanotrope/corticotrope	NA	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8228	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanotropes	Pomc	Melanotrope/corticotrope	Tissue	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8229	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Melanotropes	"Pomc, Pax7"	Melanotropes	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8230	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	Sox2	Pituitary stem cells	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8231	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Posterior pituitary	Nkx2.1	Posterior pituitary	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8232	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	Pou1f1	Proliferating pou1f1 cells	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8233	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Somatotropes	Gh	Somatotropes	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8234	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thyrotrope	"Cga, Gata2, Pou1f1"	Thyrotrope	Tissue	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8235	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thyrotropes	Tshb	Thyrotropes	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8236	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thyrotropes	"Cga, Gata2, Pou1f1"	Thyrotropes	NA	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8237	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cell cycling cells	"Ccne1, Cdkn1c"	Cell cycling cells	NA	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8238	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cell cycling cells	"Ccne1, Cdkn1c"	Cell cycling cells	Tissue	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8239	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8240	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Corticotropes	"Pomc, Pax7-"	Corticotropes	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8241	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Sox2, Prop1"	Stem cells	NA	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8242	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Sox2, Prop1"	Stem cells	Tissue	Pituitary glands	31913463	Endocrinology	PROP1-Dependent Retinoic Acid Signaling Regulates Developmental Pituitary Morphogenesis and Hormone Expression	GSE142074
8243	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Red cells	Hbb-bt	Red blood cells	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8244	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Blood cells	C1qa	White blood cells	Tissue	Pituitary glands	30335147	Endocrinology	Single-Cell RNA Sequencing Reveals Novel Markers of Male Pituitary Stem Cells and Hormone-Producing Cell Types	GSE120410
8245	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Extravillous trophoblasts cells	"HLA-G, LAIR2, DIO"	Extravillous trophoblasts cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8246	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stomal cells	Xist	Maternal decidual stroma	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8247	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Acta2, Wnt5b, Pdgfrb"	Fetal mesenchyme group 1	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8248	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Gata4, Kit, Pdpn"	Fetal mesenchyme group 2	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8249	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pro-angiogenic lineages	Vegfc	Pro-angiogenic lineages	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8250	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Syncytiotrophoblasts cells	ERVFRD-1	Syncytiotrophoblasts cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8251	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Villous cytotrophoblasts cells	"MKI67, PARP2, PAGE4, PEG10, PARP1"	Villous cytotrophoblasts cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8252	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Blood cells	"Hbb-y, Hba-x"	Blood cells	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8253	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"PRL, IGFBP1"	Decidualized stromal cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8254	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	TK1	Fibroblasts	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8255	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	PCNA	Fibroblasts	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8256	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"NKG7, NCAM1"	Natural killer (NK) cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8257	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	VIM	Pan fibroblasts3 cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8258	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"CDH5, PECAM1"	Vascular endothelial cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8259	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"KRT8, CDH1"	Endoderm epithelial cells	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8260	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythroblasts	TOP2A	Erythroblasts	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8261	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD163, CD14, CSF1R, CD68"	Macrophages	Tissue	Placentas	30402542	Sci Adv	A single-cell survey of the Human first-trimester placenta and decidua	NA
8262	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Mrc1	Macrophages	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8263	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Bank1, Btla"	B cells	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8264	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Flt4, Vegfr3"	Lymphatic endothelial cells (LECs)	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8265	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	Igf1	Lymphocytes	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8266	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Cd244	Natural killer (NK) cells	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8267	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Kdr, Tek"	Vascular endothelial cells	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8268	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Gzmc, Slamf1, Cd84"	T cells	Tissue	Placentas	33141023	eLife	Single nuclei RNA-seq of Mouse placental labyrinth development	GSE152248
8269	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"p16Ink4a, p19Arf, p21Cip1, p27kip1, Pai-1"	Senescent Tumor cells	NA	Prostate	33186519	Cancer Cell	Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis	E-MTAB-9578
8270	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Ck8, Ck18"	Luminal cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8271	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Ck8, Ck18"	Luminal cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8272	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Luminal cells	"Ck8, Ck18"	Luminal cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8273	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Clec4e, Arg1, Ccl4, Retnla"	Macrophages	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8274	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroendocrine cells	"Syp, Chga"	Neuroendocrine cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8275	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Trp63, Ck5"	Basal cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8276	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cdh5, Kdr, Pecam1"	Endothelial cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8277	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Ly6c2, Mzb1"	Lymphocytes	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8278	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	"Col1a1, Col1a2, Col3a1, Mmp2"	Stromal cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8279	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Svs3a, Svs1"	Seminal vesicle epithelial cells	Tissue	Prostate	32807988	Nat Genet	Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips	NA
8280	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	Trp63	Prostate basal cell	Organoids	Prostate	32934023	Cancer Res	Single-cell RNA sequencing unveils an IL-10-producing helper subset that sustains humoral immunity during persistent infection	GSE157413
8281	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Epcam	Epithelial cells	NA	Prostate	33186519	Cancer Cell	Senescence Reprogramming by TIMP1 Deficiency Promotes Prostate Cancer Metastasis	E-MTAB-9578
8282	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5"	Endothelial cells	Tissue	Pulmonary	29858212	J Cell Biol	Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis	NA
8283	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ccl2, Ccr2, Ly6c2, Mrc1, Itgax, Cx3cr1, Csf1r"	Cells of monocyte lineage	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8284	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Early rpcs	"Fgf15, Sfrp2"	Early rpcs	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8285	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Early rpcs	"Fgf15, Sfrp2"	Early rpcs	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8286	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gabaergic and starburst amacrine cells	Gad1	Gabaergic and starburst amacrine cells	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8287	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Pou4f2, Thy1, Nefl"	Ganglion cells	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8288	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glycinergic amacrine cells	Slc6a9	Glycinergic amacrine cells	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8289	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	PNAd	High endothelial venules	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8290	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Imc9 cancer cells	"Mgp, Fkbp11, Cdkn2a, Mrpl33"	Imc9 cancer cells	Tissue	Retina	30797773	Cell Syst	Convergent identification and interrogation of tumor-intrinsic factors that modulate cancer immunity	GSE63472
8291	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Late rpcs	"Crym, Car2, Nfia, Nfib, Nfix"	Late rpcs	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8292	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Late rpcs	"Crym, Car2, Nfia, Nfib, Nfix"	Late rpcs	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8293	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	Prkca	Rod bipolar cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8294	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	Slc6a9	Glycinergic amacrine cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8295	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Ascl1, Neurog3"	Neurogenic cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8296	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Ascl1, Neurog3"	Neurogenic cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8297	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Non-rods	Nrxn3	Non-rods	Tissue	Retina	31493975	Neuron	Nucleome Dynamics during Retinal Development	GSE87064
8298	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Perivascular cells	"Myl9, Cspg4, Pdgfrb, Myh11, Des, Acta2"	Perivascular cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8299	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Photoreceptors	Crx	Photoreceptors	Tissue	Retina	31399471	Development	Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons	GSE122466
8300	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Esco2, Prc1, Cenpe, Ckap2I, Hmmr, Shcbp1, PIk1, Pbk, Ska1, Kif11"	Replicating monocyte	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8301	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	Rpe65	Retina pigment epithelium	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8302	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	Pou4f1	Retinal ganglion cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8303	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Pou4f1, Sncg, Pou4f2, Tfap2d"	Retinal ganglion cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8304	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Slc17a6, Rbpms, Pou4f1, Pou4f2, Pou4f3"	Retinal ganglion cells	Tissue	Retina	31784286	Neuron	Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes	GSE137400
8305	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Sncg, Pou4f1, Nrn1, Slc17a6"	Retinal ganglion cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8306	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Rbpms, Pou4f1, Thy1, Slc6a9, Nefl, Nefm, Sncg, Slc17a6, Pax6"	Retinal ganglion cells	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8307	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Slc17a6, Sncg"	Retinal ganglion cells	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8308	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Slc17A6, Pax6"	Retinal ganglion cells	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8309	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ganglion cells	"Isl1, Pou4f2, Pou6f2, Elavl4"	Retinal ganglion cells	Tissue	Retina	31399471	Development	Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons	GSE122466
8310	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	Rpe65	Retina pigment epithelium	Tissue	Retina	31676603	Journal of Neuroscience	Disrupted Blood-Retina Lysophosphatidylcholine Transport Impairs Photoreceptor Health But Not Visual Signal Transduction	NA
8311	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ttr, Ptgds, BEST1, RLBP1, LRAT, RPE65, RDH5, TYRP1, KRT18, RDH10, BMP4, RBP1"	Retina pigment epithelium	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8312	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Prkca, Vstm2b, Prdm8, Pcp2"	Rod bipolar cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8313	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Trpm1, Grm6, Sebox, Prkca, Vstm2b, Otx2, Vsx2"	Rod bipolar cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8314	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Prkca, Lrtm1"	Rod bipolar cells	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8315	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	Rho	Rods	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8316	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	Pde6a	Rods	Tissue	Retina	31493975	Neuron	Nucleome Dynamics during Retinal Development	GSE87064
8317	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	"Rho, Gnat1, Rcvrn, Nr2e3, Nrl, Rbp3"	Rods	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8318	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	"Rho, Gnat1, Cnga1, Nrl, Nr2e3"	Rods	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8319	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	"Rho, Pdc, Nrl, Sag, Gnat1, Gngt1, Nr2e3, Gnb1, Cnga1"	Rods	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8320	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	"Nrl, Rho"	Rods	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8321	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rods	"Rho, Nrl, Nr2e3, Gnat1, Cngb1, Essrb, Mef2c, Gabrr2, Cplx4, Cnga1, Nxnl1"	Rods	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8322	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"Ccnd1, Cdk4, Pax6"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8323	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"Pax6, Vsx2, Lhx2"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8324	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	Mki67	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8325	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"Pax6, Vsx2"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8326	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"cnd1, Ube2c, Fgf15, Ascl1"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8327	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"Ccnd1, Cdk4, Pax6"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8328	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"Pax6, Vsx2, Lhx2"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8329	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	Mki67	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8330	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"Pax6, Vsx2"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8331	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Rpc	"cnd1, Ube2c, Fgf15, Ascl1"	Rpc	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8332	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	S-cones	Opnsw1	S-cones	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8333	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cxcr5, Bcl6, Cd40lg, Il4, Il21, Cd4"	T follicular helper cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8334	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Bcl6, Cxcr5, Cd4"	T follicular helper cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8335	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Tbx21, Cxcr6, Ifng, Tnf, Stat4, Cd4"	T helper 1 cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8336	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"T-bet, Ifng, Cxcr6, Cd4"	T helper 1 cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8337	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Il17a, Il17f, Rorc, Stat3, Cd4"	T helper 17 cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8338	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Vsx2, Sebox, Cabp5, Vsx1"	Cone bipolar cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8339	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	Otx2	Bipolar cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8340	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Pkc, Vsx2, Isl1"	Bipolar cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8341	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	Otx2	Bipolar cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8342	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Pkc, Vsx2, Isl1"	Bipolar cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8343	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Vsx2, Grm6, Grik1"	Bipolar cells	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8344	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Trpm1, Vsx1, Isl1, Gsg1, Sox6"	Bipolar cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8345	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Vsx2, Otx2, Grm6, Prkca, Trpm1, Grik1, Vsx1, Cabp5, Scgn, Sebox"	Bipolar cells	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8346	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	Vsx2	Bipolar cells	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8347	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Cabp5, Grm6, Isl1, Otx2, Vsx2, Slc1a2, Lhx3"	Bipolar cells	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8348	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Acp5, Lyz2, Lgals3, Ms4a7, Apoe"	CCR2low monocytes	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8349	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Scgn, Grik1, Vsx1, Lhx4, Glra1, Fezf2, Zfhx4, Otx2, Vsx2"	Cone bipolar cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8350	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bipolar cells	"Lrtm1, Grik1"	Cone bipolar cells	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8351	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Otx2, Crx, Thrb, Rbp4"	Cone photoreceptors	Tissue	Retina	31399471	Development	Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons	GSE122466
8352	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	Pde6h	Cone photoreceptors	Tissue	Retina	31493975	Neuron	Nucleome Dynamics during Retinal Development	GSE87064
8353	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Arr3, Gnat2, Opn1mw, Opn1sw"	Cone photoreceptors	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8354	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Arr3, Rcvrn, Gnat2, Gngt2, Opn1sw, Opn1mw, Pde6h, Guca1a"	Cone photoreceptors	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8355	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Opn1mw, Opn1sw, Arr3, Gnat2, Cabp5, Rxrg, Thrb"	Cone photoreceptors	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8356	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Opn1sw, Opn1mw, Gnat2, Arr3, Pde6h"	Cones	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8357	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	"Arr3, Pde6h"	Cones	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8358	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cones	Opn1mw	Cones	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8359	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Tfap2b, Elavl3, Gad1, Gad2"	GABAergic amacrine cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8360	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Pdgfralpha	Astrocytes	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8361	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Icam2, Kcnj8"	Endothelial cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8362	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Mpeg1	Microglia cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8363	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Cd14, Fcgr3, Cd16, Fcgr2b, Cd32, Itgam, Cd11b"	Myeloid cells	Tissue	Retina	30797773	Cell Syst	Convergent identification and interrogation of tumor-intrinsic factors that modulate cancer immunity	GSE63472
8364	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"S1pr1, Cd3, Cd4"	Effector T cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8365	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	Tfap2b	Amacrine cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8366	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	Pax6	Amacrine cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8367	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	Tfap2b	Amacrine cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8368	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	Pax6	Amacrine cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8369	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Tfap2a, Pax6, Gad1"	Amacrine cells	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8370	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Pax2, S100b"	Astrocytes	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8371	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Tie1, Cldn5"	Endothelial cells	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8372	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	Onecut2	Horizontal cells	Tissue	Retina	30645148	FASEB Journal	Conditional deletion of Des1 in the Mouse retina does not impair the visual cycle in cones.	NA
8373	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Prox1"	Horizontal cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8374	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Prox1"	Horizontal cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8375	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Calb1, Lhx1"	Horizontal cells	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8376	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Onecut1"	Horizontal cells	Tissue	Retina	31399471	Development	Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons	GSE122466
8377	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Prox1, Pax6"	Horizontal cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8378	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Calb1, Gja10, Onecut1"	Horizontal cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8379	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Onecut1, Onecut2, Calb1, Rcvrn, Prox1, Ntrk1, Lim2, Calb2"	Horizontal cells	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8380	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	Lhx1	Horizontal cells	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8381	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Pax6"	Horizontal cells	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8382	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Horizontal cells	"Lhx1, Pax6, Calb2, Prox1"	Horizontal cells	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8383	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Onecut2, Prox1"	Amacrine cells	Tissue	Retina	31399471	Development	Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons	GSE122466
8384	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Atp6v0d2, F7, Pla2g2d, Mmp13, Tmem26, Fabp4, Mmp12"	Macrophage-committed monocytes	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8385	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"H2-Aa, Cd74, H2-Ab1, H2-Eb1, H2-DMb1, Il1b, Tgfbi, Ctsc"	Inflammatory macrophages	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8386	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Pdgfra	Astrocytes	Tissue	Retina	31676603	Journal of Neuroscience	Disrupted Blood-Retina Lysophosphatidylcholine Transport Impairs Photoreceptor Health But Not Visual Signal Transduction	NA
8387	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Tie1	Vascular endothelial cells	Tissue	Retina	31676603	Journal of Neuroscience	Disrupted Blood-Retina Lysophosphatidylcholine Transport Impairs Photoreceptor Health But Not Visual Signal Transduction	NA
8388	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Fcrls, Trem2, P2ry12, Slc2a5, Hexb, Tmem119, IBA1, Aif1)"	Macrophage_microglia	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8389	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Atp6v0d2, F7, Pla2g2d, Mmp13, Tmem26, Fabp4, Mmp12, Hexb, Trem2"	Monocyte-derived macrophages	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8390	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Fcrls, Xylt2, Cxcl2, Hgsnat, Hpgd, Lyve1, Adrb2, Bmp2, Pf4, Gm43603"	Perivascular macrophage	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8391	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Gad1, Gad2, Slc6a1, Slc6a9"	Amacrine cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8392	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cspg4"	Endothelial cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8393	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Aif1, Tmem119, Cx3cr1, Trem2"	Microglia cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8394	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Gad1, Slc6a9, Stx1b, Calb2, Chat, Th, Slc17a8, Ebf3"	Amacrine cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8395	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Pax2, Gfap, Vim, Glul"	Astrocytes	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8396	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Ms4a1, Cd22, Cr2, Cd2, Cd24a"	B cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8397	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Cd8a, Cd8b1, Cd3e"	CD8 T cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8398	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	Cd8a	CD8A T cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8399	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"A530099J19Rik, Gm13373, Asgr2, Cyp26b1, Gpr33, Xcr1, Hepacam2, Gm9530, Gcsam, Cdh17"	Dendritic cell-committed monocytes	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8400	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Ccr7, Dpp4, Clec9a, Itgae, Zbtb46, Flt3"	Dendritic cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8401	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Tmem119, P2ry12, Crybb1, Rspo1, Serpine2, Astn1, Cx3cr1, Csf1r"	Microglia cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8402	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Flrt3, Lad1, Gm13546, Cdkn2b, Ccr7, Serpinb1a, Scin, Adcy6, Nudt17, Gm10851"	Monocyte-derived dendritic cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8403	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Anxa8, Ccr2, Ly6c2"	Monocytes	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8404	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Anxa8, Ly6c2, Ccr2, Slc7a2, Tnfsf13os, Fzd7, Ms4a8a, Clec4e, Chil3, Dmkn, Cd177, Nfe2, Plcb1, Hp, Thbs1, Arhgef3"	Monocytes	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8405	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Klra1, Klra6, Klrb1c, Klrb1a, Klrb1b, Klrb1f"	Natural killer (NK) cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8406	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Pir, Klk1, Angptl7, Sh3bgr, Ccdc162, Cacna1e, Emid1, Dntt, Cd300c, Klk1b27"	Plasmacytoid dendritic cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8407	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Cd3e, S1pr1, Ccr7, Il6ra, Lef1, Cd44, Cd69, Cd4"	Undifferentiated CD4 T cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8408	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Cldn5, Cdh5, Pecam1, Vwf, Erg, Tek, Kdr, Flt1"	Vascular endothelial cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8409	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	Lif	Muller cells	Tissue	Retina	31676603	Journal of Neuroscience	Disrupted Blood-Retina Lysophosphatidylcholine Transport Impairs Photoreceptor Health But Not Visual Signal Transduction	NA
8410	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Glul, Rlbp1"	Muller cells	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8411	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	Lhx2	Muller cells	Tissue	Retina	32457148	Proc Natl Acad Sci U S A	Forward genetic analysis using OCT screening identifies Sfxn3 mutations leading to progressive outer retinal degeneration in mice	GSE147573
8412	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Gfap, Vim, Aqp4, S100B, Aldh1l1, Glul, Rlbp1, Slc1a3, Pax6, Acsl3, Sparc, Col9a1, Spc25, Car14, Apoe, Dkk3, Itm2B, Dbi, Gpr37, Car2, Dtx2, Pax6, Clu, Ptn, Pdgfra, Hes1"	Muller cells	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8413	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Vim, Slc3a2, Glul, Rlbp1"	Muller glia cells	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8414	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Slc1a3, Apoe, Dkk3, Gpr37, Rlbp1, Rax, Hes1, Notch1, Glul"	Muller glia cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8415	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Rlbp1, Glul, Apoe, Crabp1, Clu, Slc1a3, Dkk3, Crym, Gfap, Gpr37"	Muller glia cells	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8416	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	"Pax6, Vsx2, Rlbp1"	Muller glia cells	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8417	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	Rlbp1	Muller glia cells	Cell line	Retina	33326790	Cell Rep	Microglia Suppress Ascl1-Induced Retinal Regeneration in Mouse	GSE161394
8418	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	Stat1	Muller glia cells	Cell line	Retina	33326790	Cell Rep	Microglia Suppress Ascl1-Induced Retinal Regeneration in Mouse	GSE161394
8419	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	Dll3	Muller glia cells	Cell line	Retina	33326790	Cell Rep	Microglia Suppress Ascl1-Induced Retinal Regeneration in Mouse	GSE161394
8420	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muller cells	Otx2	Muller glia cells	Cell line	Retina	33326790	Cell Rep	Microglia Suppress Ascl1-Induced Retinal Regeneration in Mouse	GSE161394
8421	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Cd3e, Klra1, Klra6, Cd8a, Cd8b1"	Natural killer (NK) cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8422	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Otx2, Cabp5"	Bipolar neurons	Tissue	Retina	32075759	Cell Rep	STAT Signaling Modifies Ascl1 Chromatin Binding and Limits Neural Regeneration from Muller Glia in Adult Mouse Retina	NA
8423	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Otx2, Cabp5"	Bipolar neurons	Tissue	Retina	32075759	Cell Rep	STAT Signaling Modifies Ascl1 Chromatin Binding and Limits Neural Regeneration from Muller Glia in Adult Mouse Retina	NA
8424	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	"Sstr2, Penk, Btg2"	Neuroblasts	Tissue	Retina	31399471	Development	Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons	GSE122466
8425	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Tfap2a, Tfap2b, Tfap2c, Gad1, Gad2, Slc6a9, C1ql1, C1ql2"	Amacrine cells	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8426	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Mgp, Myl9, Col4a1, Cdh5"	Endothelial cells	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8427	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Cx3cr1, Hexb, B2m, C1qa, C1qb, C1qc, Tmem119, Ctss, P2ry12, Csf1r"	Microglia cells	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8428	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Tagln, Acta2"	Pericytes	Tissue	Retina	31170999	J Neuroinflammation	Reactive microglia and IL1beta/IL-1R1-signaling mediate neuroprotection in excitotoxin-damaged Mouse retina.	NA
8429	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Pdgfrb, Kcnj8"	Pericytes	Tissue	Retina	31775049	Cell Rep	Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina	GSE116426
8430	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Cldn5, Igfbp7, Col4a1, Acta2"	Pericytes	Tissue	Retina	32166783	J Neurosci Res	Single_cell RNA sequencing study of retinal immune regulators identified CD47 and CD59a expression in photoreceptors__mplications in subretinal immune regulation	"GSM3580725, GSM3580727"
8431	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	Kcnj8	Pericytes	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8432	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Pdgfrb, Des, Cspg4, Acta2, Anpep, Rgs5, Abcc9, Kcnj8, Cd248, Dlk1, MCAM, NT5E, CD44, Angpt1"	Pericytes	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8433	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	"Sdc1, Prdm1, Jchain, Il6ra, Tnfrsf17, Cd24a"	Plasma cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8434	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"TFAP2B, VIP, VG1, SAC, PENK, SST, nNOS, GHRH, CRH, CCK, CA-II"	GABAergic Amacrine cells	Tissue	Retina	32457074	J Neurosci	Mouse Retinal Cell Atlas:Molecular Identification of over Sixty Amacrine Cell Types	GSE149715
8435	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"TFAP3B, VG3, SEG, PENK, AII"	Glycinergic Amacrine cells	Tissue	Retina	32457074	J Neurosci	Mouse Retinal Cell Atlas:Molecular Identification of over Sixty Amacrine Cell Types	GSE149715
8436	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"ou4f2, Isl1"	Radial glia cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8437	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Isl1, Pou4f2"	Radial glia cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8438	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"ou4f2, Isl1"	Radial glia cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8439	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glia cells	"Isl1, Pou4f2"	Radial glia cells	Tissue	Retina	31128945	Neuron	Single-Cell RNA-Seq Analysis of Retinal Development Identififies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specifification	GSE118614
8440	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Pax6, Gad1, Pax6, Slc6a9"	Amacrine cells	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8441	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Rlbp1, Gfap"	Astrocytes	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8442	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pax6, Slc6a9, Vsx2"	Fibroblasts	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8443	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Kcnj8"	Vascular endothelial cells	Tissue	Retina	32650816	Genome Biol	DISC:a highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learning	GSE63473
8444	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Foxp3, Cd4, Il10"	Regulatory T cells (Treg)	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8445	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Foxp3, Il2ra, Il10, Tgfb1, Cd4"	Regulatory T cells (Treg)	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8446	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amacrine cells	"Prox1, Pax6, Stx1a, Gad2, Slc6a9, Npy, Ebf1, Nrxn2, Calb1, Calr, Pvalb, Lrrn3, Tfap2b, Mark2, Kif2c, Lims1, Fzd3"	Amacrine cells	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8447	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Gfap, Vim, Aqp4, S100B, Aldh1l1, Slc1a2, Slc1a3, Fgfr3, Rlbp1, Dbi, Apoe, Glul, Pak3, Clu, Ptn, Pdgfra, Gjb6, Aldoc, Ntsr2, Acsbg1, Rfx4, Pbxip1, Gli3, Gja1, Timp1, Aspg, Lcn2, Steap4, S1pr3, Hspb1, CxCl10, Cd44, Osmr, Serpina3n"	Astrocytes	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8448	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Vwf, Cdh5, Tek, Pecam1, Flt1, Kdr, Nos3, Mcam, MMRN1, CLDN5, BMX, ANGPT2, GJA4, TIE1, ROBO4, ECSCR"	Endothelial cells	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8449	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"S100A4, VIM, Col13a1, Col14a1, Col1a1, Itga8, Cxcl14, Npnt, Neat1, Tcf21, Lbh, Nr2f2, Tbx2, Meox2, Pi16, Mmp3, Cygb, Rtp4, Clec3b, Dcn, Prrx1, Aebp1, Lbh, Meg3"	Fibroblasts	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8450	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Mertk, Siglech, Bcl2a1a, Adora3, P2ry12, P2ry13, Olfml3, Crybb1, Hexb, Tmem119, Cx3cr1, Tyrobp, Trem2, Gpr34, Cd74"	Microglia cells	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8451	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Cd3g, Cd3d, Cd3e, Nkg7, Ncr1, Klrd1, Klrc2, Klrk1"	Natural killer (NK) cells	Tissue	Retina	32734440	Diabetologia	Single-cell transcriptome analysis of the Akimba Mouse retina reveals cell-type-specific insights into the pathobiology of diabetic retinopathy	NA
8452	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Sox2, Fos, Hes"	Retinal progenitor cells	Tissue	Retina	31399471	Development	Single-cell transcriptional logic of cell-fate specification and axon guidance in early born retinal neurons	GSE122466
8453	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd3e, Cd3g, Il2, Cd4, Cd8a, Cd8b1, Foxp3"	T cells	Organoids	Retina	31843893	Proc Natl Acad Sci U S A	Comprehensive analysis of a Mouse model of spontaneous uveoretinitis using single-cell RNA sequencing	"GSE132229, GSM3854512_3854519"
8454	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"P2ry12, Tmem119"	Microglia cells	Cell line	Retina	33326790	Cell Rep	Microglia Suppress Ascl1-Induced Retinal Regeneration in Mouse	GSE161394
8455	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Aqp5, Bhlha15"	Acinar	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8456	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Krt5, Krt14, Acta2, Cnn1"	Myoepithelial	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8457	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Aqp5, Sngc, Krt14, c-kit"	Intercalated duct	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8458	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ngf, Egf"	Granular convoluted tubules	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8459	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Slc5a5, Cftr"	Striated ducts	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8460	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Krt5, Krt14, trp63"	Basal duct cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8461	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cell	"Ascl3, Kcnma1, Slc12a2"	"Duct cell, Ascl3+"	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8462	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt14, Krt15"	Basal duct cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8463	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Krt19"	Duct cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8464	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Sox9, Aqp5"	End bud and proacinar cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8465	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Acta2"	Myoepithelial cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8466	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	Ncam1	Glial cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8467	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Macrophages	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8468	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8469	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	Alas2	Erythrocytes	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8470	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mast cells	Kit	Mast cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8471	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Nkg7, Gzma"	Natural killer (NK) cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8472	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Tubb3	Neural cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8473	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Acta2	Smooth muscle cells	Tissue	Salivary gland	33305192	iScience	Generation of a Single-Cell RNAseq Atlas of Murine Salivary Gland Development	GSE150327
8474	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Beta cells	"Cp, Nkx6.1"	SC-beta Cells	Tissue	SC-beta cells	32846125	Cell Rep	Single-Cell Transcriptome Profiling Reveals beta Cell Maturation in Stem Cell-Derived Islets after Transplantation	"GSE151117, GSE139535, GSE114297"
8475	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myocytes	Myh6 Ctnna3 Ryr2 Rbm20 Dmd Ttn Tbx5	Sinus node myocytes	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8476	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endocardial cells	Npr3 Cdh13 Eng Hmcn1 Gmds	Endocardial cells	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8477	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epicardial cells	Tbx18 Wt1 Rbfox1 Kcnd2 Grip1 Plxna4 Syne2	Epicardial cells	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8478	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	Ucp1 Cidea Prdm16 Ppargc1b Pparg	Adipocytes	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8479	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	Lep Ghr Slc1a5 Pde3b Sorbs1 Acsl1 Adipor2	Adipocytes	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8480	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	Ghr Slc1a5 Pde3b Sorbs1 Acsl1 Adipor2	Adipocytes	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8481	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	Rbfox1 Kcnd2 Grip1 Plxna4 Syne2	Epithelial cells	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8482	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a1 Fbn1 Ddr2 Lama2 Lamc1 Pcsk6 Gpc6 Rbms3 4930578G10Rik	Fibroblasts 1	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8483	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a1 Fbn1 Ddr2 Lama2 Lamc1 Pcsk6 Gpc6 Rbms3 Mecom 4930578G10Rik	Fibroblasts 2	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8484	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Zfp804b Sh3gl2 Meg3 Ano1 Sntg1 Nlgn1	Neurons	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8485	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Ptprb Icam1 Vwf Ldb2 Pecam1 Cdh5	Vascular endothelial cells	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8486	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Maf F13a1 Cd163 C3ar1 P2ry6 Mrc1 Mgl2 Adgre1 Dab2	Macrophages	Tissue	Sinus node	31253831	Nat Commun	Quantitative proteomics and single-nucleus transcriptomics of the sinus node elucidates the foundation of cardiac pacemaking	GSE130710
8487	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bm-mscs	"LepR, Grem1"	Bm-mscs	Tissue	Skeletal muscle	31809738	Cell Stem Cell	Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration	GSE110038
8488	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Faps	"Pdgfra, Cd34"	Faps	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8489	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Faps	"Abca8a, Plxbpc2"	Faps	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8490	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Itga7+vcam1-cell	"Itga7, Rgs5, Myl9"	Itga7+vcam1-cell	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8491	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle fifiber	"Ncam1, Musk"	Neuromuscular junction-postsynaptic muscle fifiber	Tissue	Skeletal Muscle	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
8492	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle fifiber	Myh7	Slow-twitch muscle fifiber	Tissue	Skeletal Muscle	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
8493	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Titin, Col22a1, Erbb4"	MTJ	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8494	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Titin, AchR, AchE5, Ano4, Hs6st2"	NMJ	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8495	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Titin, Myh9, Flnc, Runx1"	Nnknown myonuclei subpopulation	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8496	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Titin, Myh7"	Slow myonuclei	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8497	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Titin, Myh2, Myh1, Myh4"	Fast myonuclei	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8498	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myonuclei	"Itgbl1, Thbs4"	Myonuclei	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8499	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rgs5, Pdgfrb, Mcam, Cspg4, Kcnj8"	Pericytes	Tissue	Skeletal muscle	31809738	Cell Stem Cell	Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration	GSE110038
8500	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Satellite cells	Pax7	Satellite cells	Tissue	Skeletal Muscle	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
8501	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tenocytes	"Scx, Tnc, Tnmd, Col1a1"	Tenocytes	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8502	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	"Mctp1, F13a1"	B/T cells	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8503	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Ms4a1, Cd22"	B cells	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8504	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam, Cdh5, Kdr"	Endothelial cells	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8505	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Plp1, Kcna1, S100b, Mbp"	Glial cells	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8506	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Csf1r, Adgre1"	Macrophages	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8507	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	"Nestin-GFP, Gli1, Grem1, Lepr, PDGFRA, Sca1, LY6A, CD34"	Mesenchymal cells	Tissue	Skeletal muscle	31809738	Cell Stem Cell	Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration	GSE110038
8508	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Hic1	Mesenchymal progenitors	Tissue	Skeletal muscle	31809738	Cell Stem Cell	Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration	GSE110038
8509	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Pdgfra, Thy1, Gli1"	Mesenchymal progenitors	Tissue	Skeletal muscle	31809738	Cell Stem Cell	Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration	GSE110038
8510	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myod1, Vcam1, Sdc4"	Muscle stem cells	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8511	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Hs6st3, Pax7"	Muscle stem cells	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8512	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Cd14, S100a8, S100a9"	Neutrophils	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8513	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Myh11	Smooth muscle cells	Tissue	Skeletal Muscle	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
8514	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stromal cells	Dcn	Stromal cells	Tissue	Skeletal Muscle	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
8515	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Thbs4	Tendon fibroblasts	Tissue	Skeletal Muscle	32109414	Cell	Caloric Restriction Reprograms the Single-Cell Transcriptional Landscape of Rattus Norvegicus Aging	GSE137869
8516	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Rein, Mmrn1"	Pericytes	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8517	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd3e, Cd3g"	T cells	Tissue	Skeletal muscle	30922843	Molecular Cell	High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations	GSE110878
8518	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, St6galnac3"	Endothelial cells	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8519	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	Trpc3	Smooth muscle cells	Tissue	Skeletal muscle	33037211	Nat Commun	Single-nucleus RNA-seq and FISH identify coordinated transcriptional activity in mammalian myofibers	GSE150065
8520	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Bulge hfscs	"Krt24, Cd34, Grem1, Id2, Tnc, Thsd1, S100a4, Sfrp1, Dkk3, Pdzrn4, Postn, Angptl7"	Bulge hfscs	Tissue	Skin	32094197	Proc Natl Acad Sci U S A	The aging skin microenvironment dictates stem cell behavior	GSE124901
8521	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dermal	Col1a1	Dermal	Tissue	Skin	30595533	Dev Cell	Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis	GSE122043
8522	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dermal condensate	"Sox2, Bmp4, Ptch1"	Dermal condensate	Tissue	Skin	30595533	Dev Cell	Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis	GSE122043
8523	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dying cells	mt-Co1	Dying cells	Tissue	Skin	32259486	Cell	Defining the Design Principles of Skin Epidermis Postnatal Growth	GSE146122
8524	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endo lymo	Lyve1	Endo lymo	Tissue	Skin	32433953	Cell Rep	Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth	GSE42605
8525	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi	"Krt14, Sfn, Ccnb1, Cdk1"	IFE C	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8526	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi	"Krt14, Sfn, Krt14, Fth1"	IFE B	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8527	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi	"Krt14, Sfn, Krt10, Krtdap"	IFE SB	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8528	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi	"Krt14, Sfn, Sostdc1"	UHF B/SB	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8529	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi	"Krt14, Sfn, Cidea, Mgst1, Krt79, Krt17"	SG	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8530	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi	"Krt14, Sfn, Cd34, Postn"	OB	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8531	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epi	"Krt14, Sfn, Id1, Id3"	HG	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8532	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epidermal spinous cells	Krt1	Epidermal spinous cells	Tissue	Skin	32187560	Cell Rep	Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics	GSE142471
8533	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"CD34, Fgf19"	HF inner bulge stem cells	Tissue	Skin	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8534	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hf-associated cells	Krt17	HF-associated cells	Tissue	Skin	32187560	Cell Rep	Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics	GSE142471
8535	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Imm	"Cd74, Tyrobp, Cd3e, Thy1"	TC	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8536	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Imm	"Cd74, Tyrobp, C1qa, Cd209f, Ccl6"	MC1	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8537	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Imm	"Cd74, Tyrobp, Lyz1, Ccl6"	MC2	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8538	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Imm	"Cd74, Tyrobp, Ly6c2, Emilin2"	MC3	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8539	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Imm	"Cd74, Tyrobp, Cd209a, Cd74"	DC	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8540	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Imm	"Cd74, Tyrobp, Cd74, Cd207, Mfge8"	LC	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8541	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Infundibulum	"Sox9, Krt17, Krt79"	Infundibulum	Tissue	Skin	32259486	Cell	Defining the Design Principles of Skin Epidermis Postnatal Growth	GSE146122
8542	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Interfollicular epidermis	"ITGA6, Krt14, Krt10, Top2a"	Interfollicular epidermis	Tissue	Skin	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8543	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Isthmus	"Gli1, Lgr6, Lrig1, Plet1, Gata6"	Isthmus	Tissue	Skin	32094197	Proc Natl Acad Sci U S A	The aging skin microenvironment dictates stem cell behavior	GSE124901
8544	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Langerhans cells	"CD45, F4, F80"	Langerhans cells	Tissue	Skin	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
8545	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Misc	"Hbb-bt, Acta1, Alas2, Hba-a1, Hba-a2, Hba-bt"	RBC	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8546	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Misc	"Hbb-bt, Acta1"	SM	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8547	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	IL-4Ra	Myeloid-derived suppressor cells (mdsc)	Tissue	Skin	30721153	JCI Insight	MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in Human cancers.	GSE121478
8548	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Mrc1, Cd163"	M2	Tissue	Skin	30930146	Cell Stem Cell	A Subset of TREM2+ Dermal Macrophages Secretes Oncostatin M to Maintain Hair Follicle Stem Cell Quiescence and Inhibit Hair Growth	GSE108709
8549	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nc	"Enho, Tyr, Pmel, Dct, Mlana, Npy"	MEL1	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8550	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nc	"Enho, Tyr, Pmel, Dct, Mlana, Npy, Pax3, Atp6v1g1, Rps3, Tpt1"	MEL2	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8551	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Nc	"Enho, Tyr, Cnp, Mbp, Mpz"	SC	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8552	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	Ccnb1 Ccnb2 Cdk1 Top2a Cdc20 Mki67 Cdca3 Birc5 Cenpf Nusap1 Ube2c	Proliferating cells	Tissue	Skin	32094197	Proc Natl Acad Sci U S A	The aging skin microenvironment dictates stem cell behavior	GSE124901
8553	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sebaceous gland cells	"Scd1, Mgst1, Elovl6"	Sebaceous gland cells	Tissue	Skin	32259486	Cell	Defining the Design Principles of Skin Epidermis Postnatal Growth	GSE146122
8554	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sebgland	"Pparg, Prdm1, Igfbp2, Mgst1"	Sebgland	Tissue	Skin	32094197	Proc Natl Acad Sci U S A	The aging skin microenvironment dictates stem cell behavior	GSE124901
8555	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Suprabasalepd	"Grhl1, Krt10, Krt77, Mt4, Krt1, Krtdap, Calm4"	Suprabasalepd	Tissue	Skin	32094197	Proc Natl Acad Sci U S A	The aging skin microenvironment dictates stem cell behavior	GSE124901
8556	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Suprabasalhf	"Sprr1a, Krt79, Defb6, Cst6, Alox12e"	Suprabasalhf	Tissue	Skin	32094197	Proc Natl Acad Sci U S A	The aging skin microenvironment dictates stem cell behavior	GSE124901
8557	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tc1	"CD45, CD90.2, CD8beta"	Tc1	Tissue	Skin	30523076	Science	Commensal-specific T cell plasticity promotes rapid tissue adaptation to injury	NA
8558	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tc17	"CD45, CD90.2, CD8beta, CCR6"	Tc17	Tissue	Skin	30523076	Science	Commensal-specific T cell plasticity promotes rapid tissue adaptation to injury	NA
8559	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	"Pmel, Mlana"	Tumor cells	Tissue	Skin	30559380	Nature	Loss of ADAR1 in tumours overcomes resistance to immune checkpoint blockade	GSE110746
8560	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	SerpinE2	Metastatic/slow cycling cells	Tissue	Skin	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
8561	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tumor cells	Axl	Melanoma	Tissue	Skin	31685822	Nat Commun	A novel Mouse model demonstrates that oncogenic melanocyte stem cells engender melanoma resembling Human disease.	GSE113502
8562	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vg3d T cells	"CD45, Vg3, TcRgd"	Vg3d T cells	Tissue	Skin	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
8563	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	ANA	"Mgst1, Msx2"	Inner layer cluster	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8564	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	ANA	"Mgst1, Msx2, Pthlh, Barx2"	Suprabasal ORS(ORS SB)	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8565	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	ANA	"Mgst1, Msx2, Krt6a, Wfdc18, Barx2"	Midpart companion layer (mCP)	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8566	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	ANA	"Mgst1, Msx2, Apoe, Cst6, Krt79, Barx2"	Upper companion layer (uCP)	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8567	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	ANA	"Mgst1, Msx2, Lgr5, Edn2, Gnmt, Sfrp1, Il11ra1"	ORS B1	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8568	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	ANA	"Mgst1, Msx2, Lgr5, Il11ra1"	ORS B2	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8569	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	ANA	"Mgst1, Msx2, Lgr5, Fgf5, Porcn, Il11ra1"	Lower proximal cup population (LPC)	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8570	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Nt5e, Mcam , CD90, Icam1"	Murine dermal fibroblasts	Tissue	Skin	29080679	J Invest Dermatol	SFRP2/DPP4 and FMO1/LSP1 Define Major Fibroblast Populations in Human Skin.	NA
8571	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epidermal cells	"Ly6a, Klf5, Tfap2c, Gata3, Pou3f1, Ifngr1, Il1r2, Il6ra, Il33, Ndufa4l2, Serpinb2"	Epidermal cells	Tissue	Skin	32094197	Proc Natl Acad Sci U S A	The aging skin microenvironment dictates stem cell behavior	GSE124901
8572	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"CD34, ITGA6, Dkk3"	HF outer bulge stem cells	Tissue	Skin	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8573	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	Conventional T cells	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8574	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Pecam1, Cdh5, Vwf"	Endothelial cells	Tissue	Skin	30464171	Nat Commun	Hedgehog stimulates hair follicle neogenesis by creating inductive dermis during murine skin wound healing	GSE112673
8575	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdgfra, Lox, Dpt"	Fibroblasts	Tissue	Skin	30464171	Nat Commun	Hedgehog stimulates hair follicle neogenesis by creating inductive dermis during murine skin wound healing	GSE112671
8576	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	"CD45, H2-Aa, CD68"	Immune cells	Tissue	Skin	30464171	Nat Commun	Hedgehog stimulates hair follicle neogenesis by creating inductive dermis during murine skin wound healing	GSE112675
8577	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Myh11, Rgs5, Notch3"	Muscle cells	Tissue	Skin	30464171	Nat Commun	Hedgehog stimulates hair follicle neogenesis by creating inductive dermis during murine skin wound healing	GSE112672
8578	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD3e, CD8a, CD44"	Activated T cells	Tissue	Skin	30721153	JCI Insight	MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in Human cancers.	GSE121478
8579	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD3e, CD8a, CD62L"	Naive T cell	Tissue	Skin	30721153	JCI Insight	MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in Human cancers.	GSE121478
8580	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"TCRbeta, CD8"	Cytotoxic T cells	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8581	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Batf3, Flt3, H2-Dmb2, Zbtb46"	Dendritic cells	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8582	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Batf3, Flt3, H2-Dmb2, Zbtb46"	Dendritic cells	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8583	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Csf1r	Monocytes	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8584	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Ncr1, Klrb1c"	Natural killer (NK) cells	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8585	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"CD45, Ly6G"	Granulocytes	Tissue	Skin	30561324	eLife	Murine HSCs contribute actively to native hematopoiesis but with reduced differentiation capacity upon aging	GSE122473
8586	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lymphocyte cells	Thy1.2	Innate lymphoid cells (ILCs)	Tissue	Skin	30712873	Cell	Homeostatic Control of Sebaceous Glands by Innate Lymphoid Cells Regulates Commensal Bacteria Equilibrium	GSE120787.
8587	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Ifitm1	B cells	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8588	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Crabp1	FIB-1	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8589	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Rgs5	FIB-2	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8590	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Mest	FIB-3	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8591	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Cenpa	FIB-4	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8592	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	S100a9	FIB-5	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8593	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Pecam1	ENDO	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8594	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Cadm4	SCH	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8595	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Acp5	DEN	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8596	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Lyve1	LYME	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8597	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic stem cells	"SCA1, c-KIT, CD150"	Hematopoietic stem cells	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8598	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"C1qb, Cd14, Cd68, Lyz2, Mafb, Pf4"	Myeloid cells	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8599	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd81, Icos, Maf, Nkg7, Thy1"	T-lymphocyte cells	Tissue	Skin	30737373	Nat Commun	Single-cell analysis reveals fibroblast heterogeneity and myeloid derived adipocyte progenitors in murine skin wounds	GSE113854 & GSE113605
8600	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Apoe, Iba-1, Cx3cr1, Tmem119, Trem2"	Microglia cells	Tissue	Skin	30930146	Cell Stem Cell	A Subset of TREM2+ Dermal Macrophages Secretes Oncostatin M to Maintain Hair Follicle Stem Cell Quiescence and Inhibit Hair Growth	GSE108709
8601	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"CD11b, Ly-6C, CD11c, MHC II"	Monocyte-derived dendritic cells	Tissue	Skin	31213601	Nat Commun	Fcmr regulates mononuclear phagocyte control of anti-tumor immunity	GSE130287
8602	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Hematopoietic cells	Ptprc	Hematopoietic cells	Tissue	Skin	32531238	Mol Ther	Macrophage Subpopulation Dynamics Shift following Intravenous Infusion of Mesenchymal Stromal Cells	P30DK116074
8603	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD19	B cells	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8604	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	CD11c	Dendritic cells	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8605	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"TCRbeta, CD4"	Effector CD4 T cells	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8606	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CD11b, LyC"	Monocytes	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8607	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	CD49b	Natural killer (NK) cells	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8608	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Keratinocytes	"Krt10, Krt14"	Keratinocytes	Tissue	Skin	30595533	Dev Cell	Single-Cell Analysis Reveals a Hair Follicle Dermal Niche Molecular Differentiation Trajectory that Begins Prior to Morphogenesis	GSE122043
8609	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a1	Fibroblasts	NA	Skin	31492709	Science Immunology	Regulatory T cells in skin are uniquely poised to suppress profibrotic immune responses	NA
8610	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Csf1r	Macrophages	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8611	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Adgre1"	Macrophages	Tissue	Skin	30721153	JCI Insight	MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in Human cancers.	GSE121478
8612	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd68, F4, F80, Csf1r, Il1b, Ccr2"	M1	Tissue	Skin	30930146	Cell Stem Cell	A Subset of TREM2+ Dermal Macrophages Secretes Oncostatin M to Maintain Hair Follicle Stem Cell Quiescence and Inhibit Hair Growth	GSE108709
8613	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cd68	Macrophages	NA	Skin	31492709	Science Immunology	Regulatory T cells in skin are uniquely poised to suppress profibrotic immune responses	NA
8614	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Itgam, Adgre2, Arg1, TGFb1, Chil3"	Pro-tumorigenic M2 state	Tissue	Skin	30721153	JCI Insight	MicroRNA-155 coordinates the immunological landscape within murine melanoma and correlates with immunity in Human cancers.	GSE121478
8615	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"CD11b, Adgre1"	Tumor associated macrophages	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8616	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Phagocytes	"CD11b, MerTk, CD64"	Mononuclear phagocytes	Tissue	Skin	31213601	Nat Commun	Fcmr regulates mononuclear phagocyte control of anti-tumor immunity	GSE130287
8617	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Cd11c	Dendritic cells	Tissue	Skin	31911617	Nat Commun	Siah2 control of T-regulatory cells limits anti-tumor immunity	GSE134814
8618	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Col1a1, Sparc"	Fibroblasts 1	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8619	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Dcn, Lum"	Fibroblasts 2	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8620	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Cxcl2, Gpx3"	Fibroblasts 3	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8621	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Mfap5, Plac8"	Fibroblasts 4	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8622	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Notum, Crabp1, Rasd1, Pappa2"	TDP	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8623	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Corin, Nrg2, Cntn1"	ADP	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8624	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Acta2, Tegln, Grem2"	DS2	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8625	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Gsn, Lum, Abi3bp, Ramp1, Mylk"	DS1	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8626	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Cxcr2, G0s2"	Neutrophils	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8627	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"CD11b, Ly-6C, Ly-6G"	Neutrophils	Tissue	Skin	31213601	Nat Commun	Fcmr regulates mononuclear phagocyte control of anti-tumor immunity	GSE130287
8628	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"CD11b, Ly6G"	Neutrophils	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8629	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Ly6g	Neutrophils	Tissue	Skin	32531238	Mol Ther	Macrophage Subpopulation Dynamics Shift following Intravenous Infusion of Mesenchymal Stromal Cells	P30DK116074
8630	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	Krt14	Epidermal basal cells	Tissue	Skin	32187560	Cell Rep	Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics	GSE142471
8631	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Krt14, Krt1"	Epithelial cells	Tissue	Skin	32187560	Cell Rep	Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics	GSE142471
8632	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	Col1a2	Fibroblasts	Tissue	Skin	32187560	Cell Rep	Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics	GSE142471
8633	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Ptprc	Immune cells	Tissue	Skin	32187560	Cell Rep	Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics	GSE142471
8634	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd209a, Cd209d, Itgax"	Dendritic cells	Tissue	Skin	32219160	Sci Adv	Phagocytosis of Wnt inhibitor SFRP4 by late wound macrophages drives chronic Wnt activity for fibrotic skin healing	GSE141814
8635	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrb1c, Klra4"	Natural killer (NK) cells	Tissue	Skin	32414321	BMC Bioinformatics	CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments	GSE121478
8636	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmacytoid dentritic cells	"Ccr9, Ly6d"	Plasmacytoid dentritic cells	Tissue	Skin	32414321	BMC Bioinformatics	CIPR: a web-based R/shiny app and R package to annotate cell clusters in single cell RNA sequencing experiments	GSE121478
8637	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD19	B cells	Tissue	Skin	32433953	Cell Rep	Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth	GSE42605
8638	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Skin	32433953	Cell Rep	Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth	GSE42605
8639	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdpn, Col1a1"	Fibroblasts	Tissue	Skin	32433953	Cell Rep	Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth	GSE42605
8640	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"CD11b, CD11c"	Myeloid cells	Tissue	Skin	32433953	Cell Rep	Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth	GSE42605
8641	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Tissue	Skin	32433953	Cell Rep	Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth	GSE42605
8642	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Antigen-presenting cells (APC)	"Itgax, Itgam, Xcr1, Cd207"	Antigen-presenting cells (APC)	Tissue	Skin	32453712	JCI insight	A transcriptomic map of murine and human alopecia areata	NA
8643	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd19"	B cells	Tissue	Skin	32453712	JCI insight	A transcriptomic map of murine and human alopecia areata	NA
8644	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd79b, Cd19"	B cells	Tissue	Skin	32531238	Mol Ther	Macrophage Subpopulation Dynamics Shift following Intravenous Infusion of Mesenchymal Stromal Cells	P30DK116074
8645	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Cd209a, Cd74"	Dendritic cells	Tissue	Skin	32531238	Mol Ther	Macrophage Subpopulation Dynamics Shift following Intravenous Infusion of Mesenchymal Stromal Cells	P30DK116074
8646	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Adgre1, Fcgr1, Cd68"	Monocytes/macrophages	Tissue	Skin	32531238	Mol Ther	Macrophage Subpopulation Dynamics Shift following Intravenous Infusion of Mesenchymal Stromal Cells	P30DK116074
8647	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzma, Nkg7, Il2rb, Ncr1"	Natural killer (NK) cells	Tissue	Skin	32531238	Mol Ther	Macrophage Subpopulation Dynamics Shift following Intravenous Infusion of Mesenchymal Stromal Cells	P30DK116074
8648	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Cell line	Skin	30552023	Immunity	Successful Anti-PD-1 Cancer Immunotherapy Requires T Cell-Dendritic Cell Crosstalk Involving the Cytokines IFN-g and IL-12	GSM3090155
8649	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"TCRbeta, CD4, Foxp3"	Regulatory T cells (Treg)	Tissue	Skin	31350177	Nature	Treg cells promote the SREBP1-dependent metabolic fitness of tumor-promoting macrophages via repression of CD8+ T cell- derived interferon-gamma	GSE132748
8650	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd4, Cd25"	Regulatory T cells (Treg)	Tissue	Skin	31911617	Nat Commun	Siah2 control of T-regulatory cells limits anti-tumor immunity	GSE134814
8651	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Dlk1, Sca1, Ly6a"	Lwc lower dermal fifibroblasts	Cell line	Skin	32755548	Cell Stem Cell	Distinct Regulatory Programs Control the Latent Regenerative Potential of Dermal Fibroblasts during Wound Healing	"GSE108677, GSE131601"
8652	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Crabp1, Prss35"	Lwc upper dermal fifibroblasts	Cell line	Skin	32755548	Cell Stem Cell	Distinct Regulatory Programs Control the Latent Regenerative Potential of Dermal Fibroblasts during Wound Healing	"GSE108677, GSE131600"
8653	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Schwann cells	"Plp1, Mbp, Sox10"	Schwann cells	Tissue	Skin	30464171	Nat Commun	Hedgehog stimulates hair follicle neogenesis by creating inductive dermis during murine skin wound healing	GSE112674
8654	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Mki67, Top2a"	Actively dividing cells	Tissue	Skin	30778252	Nat Immunol	Subsets of exhausted CD8 + T cells differentially mediate tumor control and respond to checkpoint blockade	GSE122713
8655	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cx3cr1, Klrc1, Klrd1"	CD8+ T cells	Tissue	Skin	30778252	Nat Immunol	Subsets of exhausted CD8 + T cells differentially mediate tumor control and respond to checkpoint blockade	GSE122713
8656	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ccr7, Lef1, Sell"	Naive cells	Tissue	Skin	30778252	Nat Immunol	Subsets of exhausted CD8 + T cells differentially mediate tumor control and respond to checkpoint blockade	GSE122713
8657	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd11b, Cd11c, Cd19, Cd24, Cxcr3"	Type 1 helper T cells	Tissue	Skin	31911617	Nat Commun	Siah2 control of T-regulatory cells limits anti-tumor immunity	GSE134814
8658	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Cd8a, Cd8b1, Cd2, Cd4-"	CD8 T cells	Tissue	Skin	32313720	OncoImmunology	Deciphering the transcriptomic landscape of tumor-infiltrating CD8 lymphocytes in B16 melanoma tumors with single-cell RNA-Seq	GSE116390
8659	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD8, CD4"	T cells	Tissue	Skin	32433953	Cell Rep	Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth	GSE42605
8660	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd28, Cd4, Cd8"	T cells	Tissue	Skin	32453712	JCI insight	A transcriptomic map of murine and human alopecia areata	NA
8661	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Col1a1, Col3a1, Col5a1, Dcn, FBln2, Mmp2, Serpinf1, Cald1, Bmpr2, Apoe, Itgb1, Prrx1"	Fentral dermis fibroblasts	Tissue	Skin	33176144	Cell Rep	Prrx1 Fibroblasts Represent a Pro-fibrotic Lineage in the Mouse Ventral Dermis.	GSE159345
8662	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular cells	"Pecam1, Aqp1, Fabp4, Rgcc"	EC	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8663	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular cells	"Sparcl1, Acta2, Myl9, Tpm2"	VSM	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8664	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular cells	"Fxyd6, Fgl2, Lyve1, Prox1"	LV	Tissue	Skin	32109378	Cell Stem Cell	The Molecular Anatomy of Mouse Skin during Hair Growth and Rest	GSE129218
8665	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Distal isc	Bex1	Distal isc	NA	Small intestine	29144463	Nature	A single-cell survey of the small intestinal epithelium	GSE92332
8666	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterochromaffin cells	"Reg4, Afp"	Enterochromaffin cells	NA	Small intestine	29144463	Nature	A single-cell survey of the small intestinal epithelium	GSE92332
8667	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intestinal stem cells	Lgr5	Intestinal stem cells	Tissue	Small intestine	31092921	Nature	Tracing the origin of adult intestinal stem cells	RNA sequencing data that support the findings of this study have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-7660.
8668	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Label-retaining cells (lrcs)	"Lgr5, Ascl2, NFAT5, NFATc3"	Label-retaining cells (lrcs)	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8669	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	M cells	"Gp2, Spib"	M cells	Organoids	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
8670	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pan-isc	Lgr5	Pan-isc	NA	Small intestine	29144463	Nature	A single-cell survey of the small intestinal epithelium	GSE92332
8671	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proliferating cells	Mki67)	Proliferating cells	Tissue	Small intestine	31195149	Cell Mol Gastroenterol Hepatol	Single-Cell Analysis Reveals Regional Reprogramming During Adaptation to Massive Small Bowel Resection in Mice.	GSE130113
8672	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Proximal cells	Gkn3	Proximal isc	NA	Small intestine	29144463	Nature	A single-cell survey of the small intestinal epithelium	GSE92332
8673	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Villus	Ada	Villus	Tissue	Small intestine	31195149	Cell Mol Gastroenterol Hepatol	Single-Cell Analysis Reveals Regional Reprogramming During Adaptation to Massive Small Bowel Resection in Mice.	GSE130113
8674	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Alpi, Reg1"	Enterocytes	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8675	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	Gm3336	Pre-enterocytes	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8676	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Chga, Chgb"	Enteroendocrine cells	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8677	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Muc2, Guca2a"	Goblet cells	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8678	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	Defa	Paneth cells	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8679	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lgr5, Olfm4, Ascl2"	Intestinal Stem cells (ISCs)	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8680	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Mki67, Tuba1b"	Cycling stem cells	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8681	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amplifying cells	"Lgr5, Gjb3, Fgfbp1"	Transit amplifying cells	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8682	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	"Dclk1, Hck"	Tuft cells	Tissue	Small intestine	28467820	Nature	Non-equivalence of Wnt and R-spondin ligands during Lgr5+ intestinal stem cell self-renewal	GSE92865
8683	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	Reg1	Enterocytes	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8684	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Chga, Chgb, Cck, Sct, Gip, Glp1, Pyy, Nts, Ghrl"	Enteroendocrine cells	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8685	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Muc2, Guca2a"	Goblet cells	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8686	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	Defa	Paneth cells	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8687	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lgr5, Olfm4, Ascl2"	Lgr5-eGFP+ stem cells	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8688	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	"Dclk1, Trpm5, Nrgn, Ptgs1, Rgs13"	Tuft cells	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8689	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	Mptx2	Paneth cells	NA	Small intestine	29144463	Nature	A single-cell survey of the small intestinal epithelium	GSE92332
8690	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tuft cells	"Il4ra, Il13ra1, Ptprc, CD45"	Tuft-2 cells	NA	Small intestine	29144463	Nature	A single-cell survey of the small intestinal epithelium	GSE92332
8691	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Irf8, Xcr1, Clec9a, Cd8a, Batf3, Id2, Cd24"	CDC1	Tissue	Small intestine	33207209	Immunity	Group 3 Innate Lymphoid Cells Program a Distinct Subset of IL-22BP-Producing Dendritic Cells Demarcating Solitary Intestinal Lymphoid Tissues	E-MTAB-9522
8692	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Irf4, Sirpa, Clec4a4, Klf4, Rbpj, Notch2, Mgl2"	CDC2	Tissue	Small intestine	33207209	Immunity	Group 3 Innate Lymphoid Cells Program a Distinct Subset of IL-22BP-Producing Dendritic Cells Demarcating Solitary Intestinal Lymphoid Tissues	E-MTAB-9522
8693	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	"Lyz1, Defa17, Defa22, Defa24, Aug4"	Paneth cells	Tissue	Small intestine	30392957	Cell	T helper cell cytokines modulate intestinal stem cell renewal and differentiation	GSE106511
8694	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	"Lgr5, Ascl2, Slc12a2, Axin2, Olfm4"	Stem cells	Tissue	Small intestine	30392957	Cell	T helper cell cytokines modulate intestinal stem cell renewal and differentiation	GSE106510
8695	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Columnar cells	"Lgr5, Olfm4, Ascl2, Tnfrsf19, Rnf43, Znrf3"	Crypt-based columnar cells (cbcs)	Tissue	Small intestine	28686870	Cell Stem Cell	Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity	GSE99457
8696	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amplifying cells	"Hells, Pcna"	Cycling transit amplifying cells 1	Organoids	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
8697	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Amplifying cells	"Mki67, Top2a"	Cycling transit amplifying cells 2	Organoids	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
8698	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Fabp1, Krt19"	Early enterocytes	Organoids	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
8699	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	"Neurod1, Chga"	Enteroendocrine cells	Organoids	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
8700	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Atoh1, Spink4"	Goblet cells	Organoids	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
8701	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Stem cells	NA	Stem cells	Organoids	Small intestine	30526881	Cell Stem Cell	Human Intestinal Organoids Maintain Self-Renewal Capacity and Cellular Diversity in Niche-Inspired Culture Condition	GSE119969
8702	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	Alpi	Enterocytes	Tissue	Small intestine	31092921	Nature	Tracing the origin of adult intestinal stem cells	RNA sequencing data that support the findings of this study have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-7660.
8703	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enteroendocrine cells	Chga	Enteroendocrine cells	Tissue	Small intestine	31092921	Nature	Tracing the origin of adult intestinal stem cells	RNA sequencing data that support the findings of this study have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-7660.
8704	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	Muc2	Goblet cells	Tissue	Small intestine	31092921	Nature	Tracing the origin of adult intestinal stem cells	RNA sequencing data that support the findings of this study have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-7660.
8705	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Paneth cells	Lyz1	Paneth cells	Tissue	Small intestine	31092921	Nature	Tracing the origin of adult intestinal stem cells	RNA sequencing data that support the findings of this study have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-7660.
8706	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	Muc2	Goblet cells	Tissue	Small intestine	31195149	Cell Mol Gastroenterol Hepatol	Single-Cell Analysis Reveals Regional Reprogramming During Adaptation to Massive Small Bowel Resection in Mice.	GSE130113
8707	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	CD64	Macrophages	Tissue	Small intestine	33207209	Immunity	Group 3 Innate Lymphoid Cells Program a Distinct Subset of IL-22BP-Producing Dendritic Cells Demarcating Solitary Intestinal Lymphoid Tissues	E-MTAB-9522
8708	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Ly6G	Neutrophils	Tissue	Small intestine	33207209	Immunity	Group 3 Innate Lymphoid Cells Program a Distinct Subset of IL-22BP-Producing Dendritic Cells Demarcating Solitary Intestinal Lymphoid Tissues	E-MTAB-9522
8709	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cluster0	"Tnp1, Tnp2, Prm1, Prm2"	Cluster0	Tissue	Sperm	32726616	Cell Rep	PHF7 Modulates BRDT Stability and Histone-to-Protamine Exchange during Spermiogenesis	"GSE136752, GEO136752"
8710	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cluster12	"Sycp3, Dazl"	Cluster12	Tissue	Sperm	32726616	Cell Rep	PHF7 Modulates BRDT Stability and Histone-to-Protamine Exchange during Spermiogenesis	"GSE136752, GEO136752"
8711	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cluster6	Acrv1	Cluster6	Tissue	Sperm	32726616	Cell Rep	PHF7 Modulates BRDT Stability and Histone-to-Protamine Exchange during Spermiogenesis	"GSE136752, GEO136752"
8712	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Gliogenic cells	Fabp7	Gliogenic cell	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8713	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mature v2a	Vsx2	Mature v2a	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8714	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Meningeal cells	Igf2	Meningeal cells	Tissue	Spinal cord	32241803	Genes Dev	Positive autofeedback regulation of Ptf1a transcription generates the levels of PTF1A required to generate itch circuit neurons	GSE146238
8715	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Neurog3, Hes6, Neurod4"	Neurogenic cells	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8716	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neurogenic cells	"Neurog1, Vsx1, Hes6"	Neurogenic v2a	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8717	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Phrenic motor column	Alcam	Phrenic motor column	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8718	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3d, Cd3e, Cd3g, Cd4"	T helper cells	Tissue	Spinal cord	32149735	J Clin Invest	Angiopoietin-2 blockade ameliorates autoimmune neuroinflammation by inhibiting leukocyte recruitment into the CNS	GSE129105
8719	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"D930028M14Rik, Rnd3, Meis2, Hoxd10, Hoxd11, Igfbp5, Mpped2, BC039192, Gm2694, B230209E15Rik, Nkx6-2, Hoxc10, Zfhx3, Sparcl1, Gm16551, Pou2f2, Npnt, Ctxn2, Pdzrn4, Igf1"	V2a neurons cluster 1	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8720	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Hoxc10, Hhip, Nxph4, Prdm8, Hoxd10, Hoxd11, Npas1, Bhlhe22, Lin7a, Nefl, Meis2, Asxl3, Cplx1, Tac1, C1ql3, Tox, Vamp1, Gfra2, Myo16, Thy1"	V2a neurons cluster 2	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8721	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Ecel1, Cacng3, Nppc, Gm17750, 6430710C18Rik, C630043F03Rik, Tmem65, Crabp1, Dlk1, Kctd8, Adcyap1, Esrrg, Dach2, Npy, Nwd2, AK138361, Junb, Sp8, Gbx2, Col25a1"	V2a neurons cluster 3	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8722	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nfix, Nfib, Tcf4, AK083547, Shisa8, Kctd12, Nxph3, Satb1, Neurod2, Neurog2, 2900055J20Rik, Ebf3, Ass1, Chd7, Ier2, Ebf1, Mira, AK142161, Col8a1, AK082503"	V2a neurons cluster 4	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8723	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Neurod2, Nfib, Tcf4, Rgs3, Mfng, Neurod1, AK138361, E130114P18Rik, AK083547, Chodl, Gbx2, Sstr1, Ass1, Snca, Enc1, Sox11, Sp8, Cadm1, Gm17750, Zeb2"	V2a neurons cluster 5	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8724	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Hoxa3, Hoxa5, Hotairm1, Hoxa4, Hoxc5, Hoxc4, Lhx1os, Mab21l2, Lhx1, Hoxb5, Tac2, Hoxb8, Shox2, Hoxa1, Hoxb6, Lrba, Nkx6-2, Camk2n1, Pou3f1, Pdyn"	V2a neurons cluster 6	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8725	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Ndufb6, Rps4l, Ppia, Myl12b, Cox5a, Ndufs3, Ubb, Vps28, Mdh1, Fkbp3, Atp5h, Psmb2, Ndufa11, Calm2, Atp5o, Psmb6, Atp5g3, Ppa1, Arl2, Grpel1"	V2a neurons cluster 7	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8726	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Hoxc5, Vsnl1, Nefh, Nkx6-2, Hoxc8, Tuba4a, Hotairm1, Npnt, Asb4, Babam1, Sncg, Lynx1, Epb41l3, Hoxc4, Sema3a, Hoxc6, Fbxo2, Mgat3, Nwd2, Nrp2"	V2a neurons cluster 8	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8727	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Fabp7, Olig1, Slc29a4, Egfl8, Actb, Dpf1, Cck, Hsf2, Khsrp, Olig2, Scrg1, Pdgfra, Insig1, Gm10778, Spock1, Prrxl1, Dbi, Kdelr2, Ebf1, Iqsec1"	V2a neurons cluster 9	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8728	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Shox2, AK136276, Bcl11b, Ccdc109b, Hoxd11, AK029540, BC030500, Igsf21, Hoxa10, Nnat, Rprml, Hoxd10, Nxph4, Npas3, Cpne4, Lrp11, Npas1, Npy, C1ql2, Lhx1os"	V2a neurons cluster 10	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8729	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Scg5, Ccdc186, Lrpap1, Tmem59l, Resp18, Cst3, Atp6v0c, Hsp90b1, Sec11a, Cd81, Tmed9, Igfbpl1, Pfkp, Tmem59, Slc25a14, Grp, 9230105E05Rik, Tmem14c, Dad1, Ncam2"	V2a neurons cluster 11	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8730	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Chx10, Sox14, Shox2, Lhx3, or Lhx4"	V2a interneurons	Tissue	Spinal cord	29398364	Neuron	Graded Arrays of Spinal and Supraspinal V2a Interneuron Subtypes Underlie Forelimb and Hindlimb Motor Control	GSE108788
8731	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Lin28a	Early progenitor cells	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8732	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Tubb3, Elavl3, Pou4f1, Lhx2, Lhx9, Barhl1, Barhl2, Atoh1, Foxd3, Lhx1, Lhx5, lsl1, Tlx3, Prrxl1, Otp, Pax8, Lbx1, Pax2, Gbx1, BhIhe22, Pax3, Pax7, Ptf1a, Gsx1, Gsx2, Lmx1b, Ascl1, Dmrt3, Wt1, Evx1, Evx2, Pitx2, En1, Lhx3, Vsx2, Sox14, Sox21, Foxn4, Vsx1"	Neurons	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8733	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Sox9, Fabp7"	Late neural progenitor	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8734	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Fabp7	Late progenitor cell	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8735	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Cd14, Lyz2, Ly6c2, Cd68"	Macrophages	Tissue	Spinal cord	32149735	J Clin Invest	Angiopoietin-2 blockade ameliorates autoimmune neuroinflammation by inhibiting leukocyte recruitment into the CNS	GSE129105
8736	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"Mrc1, Lyve1"	Macrophages	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8737	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Sox2, Lmx1a, Msx1, Msx2, Pax3, Wnt1, Olig3, Irx3, Irx5, Pax6, Pax7, Gsx2, Ascl1, Gbx2, Gsx1, Dbx2, Dbx1, Sp8, Nkx6-2, Prdm12, Nkx6-1, Foxn4, Olig2, Nkx2-2, Nkx2-9, Foxa2, Ferd3l, Arx, Shh, Lmx1b"	Neural progenitors	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8738	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Elavl3, Tubb3"	Neuronal cells	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8739	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Kmo, Flt3, Ccr7, Ccl17"	Dendritic cells	Tissue	Spinal cord	32149735	J Clin Invest	Angiopoietin-2 blockade ameliorates autoimmune neuroinflammation by inhibiting leukocyte recruitment into the CNS	GSE129105
8740	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	"Retnlg, S100a8, S100a9"	Granulocytes	Tissue	Spinal cord	32149735	J Clin Invest	Angiopoietin-2 blockade ameliorates autoimmune neuroinflammation by inhibiting leukocyte recruitment into the CNS	GSE129105
8741	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Tmem119, P2ry12, Cx3cr1"	Microglia cells	Tissue	Spinal cord	32149735	J Clin Invest	Angiopoietin-2 blockade ameliorates autoimmune neuroinflammation by inhibiting leukocyte recruitment into the CNS	GSE129105
8742	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"S100a8, S100a9"	Neutrophils	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8743	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aqp4	Astrocytes	Tissue	Spinal cord	32241803	Genes Dev	Positive autofeedback regulation of Ptf1a transcription generates the levels of PTF1A required to generate itch circuit neurons	GSE146238
8744	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Ctss	Microglia cells	Tissue	Spinal cord	32241803	Genes Dev	Positive autofeedback regulation of Ptf1a transcription generates the levels of PTF1A required to generate itch circuit neurons	GSE146238
8745	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Rbfox3	Neurons	Tissue	Spinal cord	32241803	Genes Dev	Positive autofeedback regulation of Ptf1a transcription generates the levels of PTF1A required to generate itch circuit neurons	GSE146238
8746	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Pdgfra	Oligodendrocyte progenitors	Tissue	Spinal cord	32241803	Genes Dev	Positive autofeedback regulation of Ptf1a transcription generates the levels of PTF1A required to generate itch circuit neurons	GSE146238
8747	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mog	Oligodendrocytes	Tissue	Spinal cord	32241803	Genes Dev	Positive autofeedback regulation of Ptf1a transcription generates the levels of PTF1A required to generate itch circuit neurons	GSE146238
8748	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	Sox2	Pan-progenitor	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8749	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Sox2, Hes5, Olig2, Hes6, Neurog2, Neurod4"	Progenitor cells	Tissue	Spinal cord	30846445	Development	Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing Mouse spinal cord	NA
8750	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	"Sparcl1, GFAP"	Astrocytes	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8751	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd74, Ly6d"	B cells	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8752	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"Mki67, Birc5, Stmn1, Ube2c, Mcm3, Mcm6"	Dividing microglia cells	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8753	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ccr2, Ly6c"	Monocytes	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8754	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	"P2ry12, Tmem119, Cd9, Sperpine2, Spp1, Fn1, Ms4a7, Ms4a6c, P2ry12, Tmem119, Siglech"	Non-dividing microglia cells	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8755	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Olig1, Olig2"	Oligodendrocytes	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8756	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Trbc1, Trbc2"	T cells	Tissue	Spinal cord	33029008	Nature	Neonatal microglia-organized scar-free spinal cord repair	GSE150871
8757	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Centroblast/centrocytes	"CXCR4, CD86"	Centroblast/centrocytes	Tissue	Spleen	32396861	Cancer Cell	Mutant EZH2 Induces a Pre-malignant Lymphoma Niche by Reprogramming the Immune Response	GSE138037
8758	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dln	"Il2ra, Foxp3"	N1	Tissue	Spleen	31801070	Cell Rep	Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells	GSE124691
8759	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dz	"Mki67, Ccnb2, Ccnb1"	Dz	Tissue	Spleen	32396861	Cancer Cell	Mutant EZH2 Induces a Pre-malignant Lymphoma Niche by Reprogramming the Immune Response	GSE138037
8760	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Cd4, Foxp3, Cxcr5"	Follicular T helper cells	Tissue	Spleen	32150623	J Exp Med	Trib1 regulates T cell differentiation during chronic infection by restraining the effector program	GSE143802
8761	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lntermediate perivascular reticular cell	"Sca-1, CD105"	Lntermediate perivascular reticular cell	Tissue	Spleen	30988302	Nat Commun	Origin and differentiation trajectories of fifibroblastic reticular cells in the splenic white pulp	NA
8762	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Lz	Cd83	Lz	Tissue	Spleen	32396861	Cancer Cell	Mutant EZH2 Induces a Pre-malignant Lymphoma Niche by Reprogramming the Immune Response	GSE138037
8763	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Il7r, Cxcr3, Tbx21, Ifng"	T3-5	Tissue	Spleen	31801070	Cell Rep	Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells	GSE124691
8764	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Il2ra, Foxp3"	T6-7	Tissue	Spleen	31801070	Cell Rep	Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells	GSE124691
8765	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Tcf7, Ccr7"	N2-6	Tissue	Spleen	31801070	Cell Rep	Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells	GSE124691
8766	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	NA	"Cxcr5, Bcl6, Tcf7"	N7-8	Tissue	Spleen	31801070	Cell Rep	Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells	GSE124691
8767	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Perivascular cells	"Ly6a, Eng, Vcam1, Pdgfra"	Perivascular reticular cell	Tissue	Spleen	30988302	Nat Commun	Origin and differentiation trajectories of fifibroblastic reticular cells in the splenic white pulp	NA
8768	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pre-memory and memory cells	"Ccr6, Cd38, S1pr1"	Pre-memory and memory cells	Tissue	Spleen	32396861	Cancer Cell	Mutant EZH2 Induces a Pre-malignant Lymphoma Niche by Reprogramming the Immune Response	GSE138037
8769	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Recycling lz/dz	Myc	Recycling lz/dz	Tissue	Spleen	32396861	Cancer Cell	Mutant EZH2 Induces a Pre-malignant Lymphoma Niche by Reprogramming the Immune Response	GSE138037
8770	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Foxp3 , Il2ra"	T regulatory cells (Treg)	Tissue	Spleen	29434354	Nature Immunology	Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR.	GSE109742
8771	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Terminally differentiated tex_cells	"Cd8, Cxcr5, Pdcd1, Tcf7, Tox, Tbx21, Gzmb"	Terminally differentiated tex_cells	Tissue	Spleen	32150623	J Exp Med	Trib1 regulates T cell differentiation during chronic infection by restraining the effector program	GSE143802
8772	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tex_rogenitors	"Cd8, Cxcr5, Pdcd1, Tcf7, Tox, Tbx21, Gzmb"	Tex_rogenitors	Tissue	Spleen	32150623	J Exp Med	Trib1 regulates T cell differentiation during chronic infection by restraining the effector program	GSE143802
8773	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Til	"Tbx21, Ifng, Cxcr6"	Tl-2	Tissue	Spleen	31801070	Cell Rep	Single-Cell Profiling Defines Transcriptomic Signatures Specific to Tumor-Reactive versus Virus-Responsive CD4+ T Cells	GSE124691
8774	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Trib1 cko cells	Klrg1	Trib1 cko cells	Tissue	Spleen	32150623	J Exp Med	Trib1 regulates T cell differentiation during chronic infection by restraining the effector program	GSE143802
8775	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Triple negative cells	"Mcam, Pdgfrb, Cspg4, Cnn1"	Triple negative cells	Tissue	Spleen	30988302	Nat Commun	Origin and differentiation trajectories of fifibroblastic reticular cells in the splenic white pulp	NA
8776	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Triple negative cells	"Mki67, Mcm7, Cdk6, Cks2"	Triple negative cells	Tissue	Spleen	30988302	Nat Commun	Origin and differentiation trajectories of fifibroblastic reticular cells in the splenic white pulp	NA
8777	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Tnfrsf4 , Tnfrsf18"	Regulatory T cells (Treg) cluster 1	Tissue	Spleen	29434354	Nature Immunology	Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR.	GSE109742
8778	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Foxp3, Il2ra"	Regulatory T cells (Treg) cluster 2	Tissue	Spleen	29434354	Nature Immunology	Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR.	GSE109742
8779	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ebi3, Gzmb, Ctla4"	Regulatory T cells (Treg) cluster 3	Tissue	Spleen	29434354	Nature Immunology	Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR.	GSE109742
8780	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	AID	Germinal center B cells	Tissue	Spleen	30127060	J Exp Med	"Activated CARD11 accelerates germinal center kinetics, promoting mTORC1 and terminal differentiation"	GSE117895
8781	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Xbp1	Plasmablast	Tissue	Spleen	30127060	J Exp Med	"Activated CARD11 accelerates germinal center kinetics, promoting mTORC1 and terminal differentiation"	GSE117895
8782	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Cd69, ncr1, Il2rg, Klre1, Cd28, Ilrk1, Prr7, Ccrl2, Spry2, Klrb1c"	Natural killer (NK) cells	Tissue	Spleen	30413361	Immunity	High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NK Cell Subsets in Humans and Mouse	GSE119562
8783	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"CD4, CD44"	CD4 T cell memory precursor	Tissue	Spleen	30638736	Immunity	The Emergence and Functional Fitness of Memory CD4 T Cells Require the Transcription Factor Thpok.	GSE121002
8784	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"CD4, CD44"	CD4 T cell memory precursor	Tissue	Spleen	30638736	Immunity	The Emergence and Functional Fitness of Memory CD4 T Cells Require the Transcription Factor Thpok.	GSE121002
8785	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"CD4, CD44"	CD4 T cell memory precursor	Tissue	Spleen	30638736	Immunity	The Emergence and Functional Fitness of Memory CD4 T Cells Require the Transcription Factor Thpok.	GSE121002
8786	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"CD4, CD44"	CD4 T cell memory precursor	Tissue	Spleen	30638736	Immunity	The Emergence and Functional Fitness of Memory CD4 T Cells Require the Transcription Factor Thpok.	GSE121002
8787	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Ms4a1	B cells	Organoids	Spleen	30862842	Nat Commun	Noninvasive ultrasound stimulation of the spleen to treat inflammatory arthritis	GSE125316
8788	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	Fcer1g	Myeloid cells	Organoids	Spleen	30862842	Nat Commun	Noninvasive ultrasound stimulation of the spleen to treat inflammatory arthritis	GSE125316
8789	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Organoids	Spleen	30862842	Nat Commun	Noninvasive ultrasound stimulation of the spleen to treat inflammatory arthritis	GSE125316
8790	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Cd19	B cells	Tissue	Spleen	31205032	J Clin Invest	Preoperative stimulation of resolution and inflammation blockade eradicates micrometastases	NA
8791	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Pdcd1, Ctla4, Lag3, Entpd1, TIM3"	Exhausted T cells	Tissue	Spleen	31205032	J Clin Invest	Preoperative stimulation of resolution and inflammation blockade eradicates micrometastases	NA
8792	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Il7r, Ccr7, Sell, CD44"	T memory cells	Tissue	Spleen	31205032	J Clin Invest	Preoperative stimulation of resolution and inflammation blockade eradicates micrometastases	NA
8793	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Itgax	Dendritic cells	Tissue	Spleen	31205032	J Clin Invest	Preoperative stimulation of resolution and inflammation blockade eradicates micrometastases	NA
8794	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Tcf7, Id3, Slamf6"	Progenitorlike CD8+ T cells	Tissue	Spleen	31209400	Nat Immunol	Single-cell RNA-seq reveals TOX as a key regulator of CD8 + T cell persistence in chronic infection	GSE119943
8795	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Bcl2, Ccr7, Id3, Sell, Tcf7"	Memory precursor cells	Tissue	Spleen	31209400	Nat Immunol	Single-cell RNA-seq reveals TOX as a key regulator of CD8 + T cell persistence in chronic infection	GSE119943
8796	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Mac-1, MHC-II, CD11c"	Dendritic cells	Tissue	Spleen	31358996	Nat Immunol	The transcription factor TCF-1 enforces commitment to the innate lymphoid cell lineage.	NA
8797	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	Il1b	Monocytes	Tissue	Spleen	31471106	Immunity	Oncolytic Viruses Engineered to Enforce Leptin Expression Reprogram Tumor-Infiltrating T Cell Metabolism and Promote Tumor Clearance	GSE133699
8798	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Klrb1c	Natural killer (NK) cells	Tissue	Spleen	31471106	Immunity	Oncolytic Viruses Engineered to Enforce Leptin Expression Reprogram Tumor-Infiltrating T Cell Metabolism and Promote Tumor Clearance	GSE133699
8799	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Nos2	M1 macrophages	Tissue	Spleen	32641748	Commun Biol	Absence of central tolerance in Aire-deficient Mouse synergizes with immune-checkpoint inhibition to enhance antitumor responses	"GSE151829, GSE151830, GSE151831"
8800	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Macrophages	Tissue	Spleen	31205032	J Clin Invest	Preoperative stimulation of resolution and inflammation blockade eradicates micrometastases	NA
8801	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"C1qa, Mmp12, Il1b"	Macrophages	Tissue	Spleen	31471106	Immunity	Oncolytic Viruses Engineered to Enforce Leptin Expression Reprogram Tumor-Infiltrating T Cell Metabolism and Promote Tumor Clearance	GSE133699
8802	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cd68	Macrophages	Tissue	Spleen	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
8803	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Antigen-presenting cells (APC)	"Cd68, Cd14, Ccl6, C1qb, C1qa"	Antigen-presenting cells (APC)	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
8804	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd79b, Cd22, Cd79a"	B cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
8805	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Try5	Memory B cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
8806	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Gzmb, Ccl5, Gzma, Ncr1"	Natural killer (NK) cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
8807	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd79a, Cd22, Cd19"	B cells	Tissue	Spleen	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
8808	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	"Klrb1c, Nkg7"	Natural killer (NK) cells	Tissue	Spleen	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
8809	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"H2.Aa, H2.Ab1, Ly6d, Cd79a"	Macrophages	Tissue	Spleen	32929273	Nat Immunol	Meningeal gammadelta T cells regulate anxiety-like behavior via IL-17a signaling in neurons	GSE147262
8810	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd22, Cd79a"	B cells	Tissue	Spleen	32086381	Science Immunology	Defining the emergence of myeloid-derived suppressor cells in breast cancer using single-cell transcriptomics	GSE139125
8811	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Csf1r, Ccr2"	Monocytes	Tissue	Spleen	32086381	Science Immunology	Defining the emergence of myeloid-derived suppressor cells in breast cancer using single-cell transcriptomics	GSE139125
8812	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Iglc3	B cells	Tissue	Spleen	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
8813	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD4 T cells	"Cd3e, Cd4, Il7r"	CD4 T cells	Tissue	Spleen	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
8814	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Cd3e, Cd8, Il7r"	CD8 T cells	Tissue	Spleen	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
8815	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"Tlr7, Cst3, S100a4"	Dendritic cells	Tissue	Spleen	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
8816	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Cst3, S100a4"	Monocytes	Tissue	Spleen	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
8817	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Nkg7	Natural killer (NK) cells	Tissue	Spleen	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
8818	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	"Ly6g, Cxcr2"	Neutrophils	Tissue	Spleen	32086381	Science Immunology	Defining the emergence of myeloid-derived suppressor cells in breast cancer using single-cell transcriptomics	GSE139125
8819	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	Itgax	Neutrophils	Tissue	Spleen	32094169	Proc Natl Acad Sci U S A	Interferon lambda promotes immune dysregulation and tissue inflammation in TLR7-induced lupus	GSE142637
8820	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Igj	Plasma cell	Tissue	Spleen	32123397	Nature methods	TooManyCells identifies and visualizes relationships of single-cell clades	"GSE81861, GSE117498"
8821	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Classified using ImmGen	Germinal center cell	Tissue	Spleen	32123397	Nature methods	TooManyCells identifies and visualizes relationships of single-cell clades	"GSE81861, GSE117498"
8822	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Fcer2a, Klf2"	Follicular cell	Tissue	Spleen	32123397	Nature methods	TooManyCells identifies and visualizes relationships of single-cell clades	"GSE81861, GSE117498"
8823	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Tcf4, Crebl2"	Marginal zone cell	Tissue	Spleen	32123397	Nature methods	TooManyCells identifies and visualizes relationships of single-cell clades	"GSE81861, GSE117498"
8824	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Gfi1, Myb, Uhrf1"	Transitional cell	Tissue	Spleen	32123397	Nature methods	TooManyCells identifies and visualizes relationships of single-cell clades	"GSE81861, GSE117498"
8825	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Classified using ImmGen	Plasmablast	Tissue	Spleen	32123397	Nature methods	TooManyCells identifies and visualizes relationships of single-cell clades	"GSE81861, GSE117498"
8826	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	Mzb1	B cells	Tissue	Spleen	32125286	JCI Insight	MicroRNA-146a regulates immunerelated adverse events caused by immune _heckpoint inhibitors	GSE147327
8827	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Csf3r, Cxcr2, Ly6g, C1qa, C1qb"	Myeloid cells	Tissue	Spleen	32125286	JCI Insight	MicroRNA-146a regulates immunerelated adverse events caused by immune _heckpoint inhibitors	GSE147327
8828	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Tissue	Spleen	32125286	JCI Insight	MicroRNA-146a regulates immunerelated adverse events caused by immune _heckpoint inhibitors	GSE147327
8829	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophuls	"Cxcr2, II1b"	Neutrophils	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
8830	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"B220, GL7, FAS, IgD"	GC B cells	Tissue	Spleen	32396861	Cancer Cell	Mutant EZH2 Induces a Pre-malignant Lymphoma Niche by Reprogramming the Immune Response	GSE138037
8831	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"Cd19, Cd38, Pax5, Ptprc"	B cells	Tissue	Spleen	32444631	Nat Commun	Imbalance of Regulatory and Cytotoxic SARS-CoV-2-Reactive CD4 + T Cells in COVID-19	GSE140133
8832	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd4, Foxp3, Cxcr5"	Regulatory T cells (Treg)	Tissue	Spleen	32150623	J Exp Med	Trib1 regulates T cell differentiation during chronic infection by restraining the effector program	GSE143802
8833	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Gad1, Gad2, Slc17a7, Slc17a6"	Gabaergic neurons	Tissue	Spleen	32929273	Nat Immunol	Meningeal gammadelta T cells regulate anxiety-like behavior via IL-17a signaling in neurons	GSE147262
8834	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3g	T cells	Organoids	Spleen	30862842	Nat Commun	Noninvasive ultrasound stimulation of the spleen to treat inflammatory arthritis	GSE125316
8835	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD8b1, Foxp3"	T cells	Tissue	Spleen	31471106	Immunity	Oncolytic Viruses Engineered to Enforce Leptin Expression Reprogram Tumor-Infiltrating T Cell Metabolism and Promote Tumor Clearance	GSE133699
8836	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Timeless, Cd4, Cd27, Cd3e, Cd8a"	T cells	Tissue	Spleen	31751331	PLoS biolog	Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity	GSE132642
8837	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Cd3e	T cells	Tissue	Spleen	31754020	Genome Research	Murine single-cell RNA-seq reveals cell-identity- and tissue-specific trajectories of aging	GSE132901
8838	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3, Cd4, Cd8"	T cells	Tissue	Spleen	32086381	Science Immunology	Defining the emergence of myeloid-derived suppressor cells in breast cancer using single-cell transcriptomics	GSE139125
8839	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd3, Cd4, Cd8"	T cells	Tissue	Spleen	32125286	JCI Insight	MicroRNA-146a regulates immunerelated adverse events caused by immune _heckpoint inhibitors	GSE147327
8840	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd4, Cd8alpha, Foxp3, Cxcl9"	T cells	Tissue	Spleen	32641748	Commun Biol	Absence of central tolerance in Aire-deficient Mouse synergizes with immune-checkpoint inhibition to enhance antitumor responses	"GSE151829, GSE151830, GSE151831"
8841	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	CD8 T cells	"Cd69, Cd103, Egr1"	CD8 T cells	Tissue	Spleen	32641748	Commun Biol	Absence of central tolerance in Aire-deficient Mouse synergizes with immune-checkpoint inhibition to enhance antitumor responses	"GSE151829, GSE151830, GSE151831"
8842	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Adgre1	Macrophages	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8843	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neutrophils	S100a8	Neutrophils	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8844	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmablasts	Sdc1	Plasmablasts	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8845	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD79a	B cells	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8846	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	Flt3	Dendritic cells	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8847	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"Ccr2, Ly6c2"	Monocytes	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8848	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Ncr1	Natural killer (NK) cells	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8849	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	CD3e	T cells	Tissue	Splenocytes	32699843	Cell Rep Med	An Agonistic Anti-CD137 Antibody Disrupts Lymphoid Follicle Structure and T-Cell-Dependent Antibody Responses	"GSE141111, GSE141117"
8850	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Intermediate	"Cd44, Met, Nrp2, Kcnj13"	Intermediate	Tissue	Stria vascularis	31920542	Frontiers in Molecular Neuroscience	Single Cell and Single Nucleus RNA-Seq Reveal Cellular Heterogeneity and Homeostatic Regulatory Networks in Adult Mouse Stria Vascularis	GSE136196
8851	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Marginal	"Kcne1, Kcnq1, Abcg1, Heyl"	Marginal	Tissue	Stria vascularis	31920542	Frontiers in Molecular Neuroscience	Single Cell and Single Nucleus RNA-Seq Reveal Cellular Heterogeneity and Homeostatic Regulatory Networks in Adult Mouse Stria Vascularis	GSE136196
8852	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spindle	"Slc26a4, P2rx2, Kcnj16"	Spindle	Tissue	Stria vascularis	31920542	Frontiers in Molecular Neuroscience	Single Cell and Single Nucleus RNA-Seq Reveal Cellular Heterogeneity and Homeostatic Regulatory Networks in Adult Mouse Stria Vascularis	GSE136196
8853	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"CLDN11, ZO-1, Sox8, Nr2f2"	Basal cells	Tissue	Stria vascularis	31920542	Frontiers in Molecular Neuroscience	Single Cell and Single Nucleus RNA-Seq Reveal Cellular Heterogeneity and Homeostatic Regulatory Networks in Adult Mouse Stria Vascularis	GSE136196
8854	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ciliated ependymal	Hydin	Ciliated ependymal	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8855	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dspn	"Drd1, Lingo2"	Dspn	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8856	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fxop2_olfm3 neuron	"Fxop2, Olfm3"	Fxop2_olfm3 neuron	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8857	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ispn	Drd2	Ispn	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8858	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	Dcx	Migrating neuroblast	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8859	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mural cells	Pdgfrb	Mural cells	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8860	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Opcs	NG2	Opcs	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8861	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pv_th interneuron	"Hs3st2, Cntnap4"	Pv_th interneuron	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8862	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Secretory cells	Ttr	Secretory ependymal	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8863	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sst_npy interneuron	Nos1	Sst_npy interneuron	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8864	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cycling cells	Top2a	Cycling cells	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8865	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Gfap	Astrocytes	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8866	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Slc2a1	Endothelial cells	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8867	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Csf1r	Microglia cells	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8868	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	NA	Neurons	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8869	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Mog	Oligodendrocytes	Tissue	Striatal	32681824	Neuron	Cell Type-Specific Transcriptomics Reveals that Mutant Huntingtin Leads to Mitochondrial RNA Release and Neuronal Innate Immune Activation	GSE152058
8870	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Acinar cells	"Bhlha15, Aqp5"	Acinar cells	Tissue	Submandibular glands	30232460	Sci Rep	Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance.	GSE113466
8871	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Basal cells	"Trp63, Krt5, Krt14"	Basal cells	Tissue	Submandibular glands	30232460	Sci Rep	Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance.	GSE113466
8872	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ductal cells	"Krt7, Krt8"	Ductal cells	Tissue	Submandibular glands	30232460	Sci Rep	Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance.	GSE113466
8873	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ductal cells	"Krt7, Krt8, Krt18"	C5 subtype	Tissue	Submandibular glands	30232460	Sci Rep	Genetic and scRNA-seq Analysis Reveals Distinct Cell Populations that Contribute to Salivary Gland Development and Maintenance.	GSE113466
8874	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Cell cycling cells	"Cdk1, Cenpa, Top2a"	Cell cycling cells	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8875	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Chondrocytes	"Sox6, Cd14, Chad, Chadl, Cilp, Clu, Sox9, Matn3"	Chondrocytes	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8876	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythrocytes	"H2-Aa, H2-Ab1"	Erythrocytes	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8877	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdpn, Fap, Thy1, Sfrp2, Col11a1, Mfap4"	Fibroblasts 1	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8878	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdpn, Fap, Thy1, Tnfaip6, Inhba, Prg4"	Fibroblasts 2	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8879	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdpn, Fap, Thy1, Apod, Clec3b, Cd34"	Fibroblasts 3	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8880	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdpn, Fap, Thy1, Top2a, Hmgb2, Cdk1"	Fibroblasts 4	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8881	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts	"Pdpn, Fap, Thy1, Clic5, Col22a1, Tspan15"	Fibroblasts 5	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8882	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Actn3, Tnnt3, Aldoa"	Muscle cells	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8883	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Osteoblasts	"Alpl, Bglap, Bglap2, Omd, Runx2, Sp7, Ostn"	Osteoblasts	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8884	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Acta2, Notch3, Rgs5"	Pericytes	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8885	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Vascular cells	"Cdh5, Emcn, Pecam1"	Vascular cells	Tissue	Synovium	31142839	Nature	Distinct fibroblast subsets drive inflammation and damage in arthritis	GSE129087
8886	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Tenocytes	"Scx, Fmod, Col11a1, Col1a1, Tnmd"	Tenocytes	Tissue	Tendon	31961320	eLife	Tgfbeta signaling is critical for maintenance of the tendon cell fate	GSE139558
8887	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"HIF1a, VEGFA"	Endothelial progenitors	Cell line	Tendon	33293508	Bone Res	Mesenchymal VEGFA induces aberrant differentiation in heterotopic ossification	GSE126060
8888	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"CD31, Tie2, CD34, CD133"	Endothelial progenitors	Cell line	Tendon	33293508	Bone Res	Mesenchymal VEGFA induces aberrant differentiation in heterotopic ossification	GSE126060
8889	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Condensing spermatids	"Tnp2, Tnp1, Hspa1l, Prm1"	Condensing spermatids	Tissue	Testicle	29695820	Sci Rep	Characterization of germ cell differentiation in the male Mouse through single-cell RNA sequencing	NA
8890	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Meioc, Prdm3, Top2a, Smc3"	Early spermatocytes	Tissue	Testicle	30893341	PLoS Genet	Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.	GSE121904
8891	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Elongating spermatids	Dyrk4	Elongating spermatids	Tissue	Testicle	29695820	Sci Rep	Characterization of germ cell differentiation in the male Mouse through single-cell RNA sequencing	NA
8892	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Elongating spermatids	Tnp1	Elongating spermatids	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8893	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Elongating spermatids	"Prm3, Izumo3, Tssk6"	Elongating spermatids	Tissue	Testicle	30893341	PLoS Genet	Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.	GSE121904
8894	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germline pluripotency cells	"Dppa3, Nanog, Sox2"	Germline pluripotency cells	Tissue	Testicle	31243281	Nat Commun	Developmental kinetics and transcriptome dynamics of stem cell specification in the spermatogenic lineage	GSE124904
8895	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myoid cells	Myh11	Myoid cells	Tissue	Testicle	31582414	Development	CDK2 kinase activity is a regulator of male germ cell fate.	GSE130554
8896	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Peritubular	Vcam1	Peritubular	Tissue	Testicle	31582414	Development	CDK2 kinase activity is a regulator of male germ cell fate.	GSE130554
8897	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myoid cells	"PTM, Acta2"	Peritubular myoid cells	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8898	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Postnatal ssc	"Etv5, Id4, Lhx1, Nanos2, Ret"	Postnatal ssc	Tissue	Testicle	31243281	Nat Commun	Developmental kinetics and transcriptome dynamics of stem cell specification in the spermatogenic lineage	GSE124904
8899	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatids	Tex21	Round spermatids	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8900	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatids	"Acrv1, Izumo1, Catsper3, Catsper4"	Round spermatids	Tissue	Testicle	30893341	PLoS Genet	Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.	GSE121904
8901	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	Piwil1	Spermatocytes	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8902	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Sycp1, Sycp2, Sycp3, H2afx"	Spermatocytes	Tissue	Testicle	30893341	PLoS Genet	Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.	GSE121904
8903	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Tdrd1, Piwil2, Meioc, Hormad1, Gpat2"	Spermatocytes 1	Tissue	Testicle	29695820	Sci Rep	Characterization of germ cell differentiation in the male Mouse through single-cell RNA sequencing	NA
8904	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Prss43, Prss42"	Spermatocytes 2	Tissue	Testicle	29695820	Sci Rep	Characterization of germ cell differentiation in the male Mouse through single-cell RNA sequencing	NA
8905	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Esx1, Dazl, Crabp1"	Spermatogonia	Tissue	Testicle	29695820	Sci Rep	Characterization of germ cell differentiation in the male Mouse through single-cell RNA sequencing	NA
8906	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	Dmrt1	Spermatogonia	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8907	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	NA	Spermatogonia	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8908	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Zbtb16, Sall4, Sohlh1, Dmrt1"	Spermatogonia	Tissue	Testicle	30893341	PLoS Genet	Dynamic transcriptome profiles within spermatogonial and spermatocyte populations during postnatal testis maturation revealed by single-cell sequencing.	GSE121904
8909	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Spermatocytes	"Id4, Gfra1, Lhx1, Egr2, Etv5, Nanos2, Ret, Eomes"	Spermatogonial stem cell	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8910	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Terminal differentiation cells	"Kit, Stra8"	Terminal differentiation cells	Tissue	Testicle	31243281	Nat Commun	Developmental kinetics and transcriptome dynamics of stem cell specification in the spermatogenic lineage	GSE124904
8911	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionated testicular cells	Dazl	Germ cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130593
8912	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionated testicular cells	Amh	Sertoli Cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130594
8913	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionated testicular cells	Pecam1	Endothelial cellss	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130598
8914	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionated testicular cells	Cd68	Macrophage	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130599
8915	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionated testicular cells	Cnmd	Innate lymphocyte	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130600
8916	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Cyp11a1	Leydig Cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130595
8917	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Acta2	Pertubular myoids	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130596
8918	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Igf1	Stromal cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130597
8919	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Dazl	Germ cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130593
8920	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Amh	Sertoli Cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130594
8921	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Cyp11a1	Leydig Cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130595
8922	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Acta2	Pertubular myoids	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130596
8923	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Igf1	Stromal cells	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130597
8924	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Pecam1	Endothelial cellss	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130598
8925	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Cd68	Macrophage	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130599
8926	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Unfractionatedtesticular cells	Cnmd	Innate lymphocyte	Tissue	Testicle	31964773	Development	Single-cell RNAseq analysis of testicular germ and somatic cell development during the perinatal period	GSE130600
8927	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Dnmt3a, Dnmt3b, Sohlh1, Sox3"	Differentiating cell progenitors	Tissue	Testicle	31243281	Nat Commun	Developmental kinetics and transcriptome dynamics of stem cell specification in the spermatogenic lineage	GSE124904
8928	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Tm4sf1	Vascular endothelial cells	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8929	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Dazl, Id4, Rhox10, Sohlh1"	Germ cells	Organoids	Testicle	31023878	Development	Differential RA responsiveness directs formation of functionally distinct spermatogonial populations at the initiation of spermatogenesis in the Mouse	NA
8930	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	MVH	Germ cells	Tissue	Testicle	31582414	Development	CDK2 kinase activity is a regulator of male germ cell fate.	GSE130554
8931	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	"Uba1, Pgk1, Zbtb16"	Leydig cells	Tissue	Testicle	29695820	Sci Rep	Characterization of germ cell differentiation in the male Mouse through single-cell RNA sequencing	NA
8932	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	Fabp3	Leydig cells	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8933	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	NA	Leydig cells	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8934	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	NA	Leydig cells	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8935	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Germ cells	Cyp11a1	Leydig cells	Tissue	Testicle	31582414	Development	CDK2 kinase activity is a regulator of male germ cell fate.	GSE130554
8936	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	Cd14	Testicular macrophages	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8937	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD79A, CD79B, STK31, DAZL, ID4, NOC4L, PTRHD1"	Spermatogonia	Tissue	Testicle	32194870	Theranostics	Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis	GSE131629
8938	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD79A, CD79B, SYCP1, SYCP3, REC8, SPO11"	Spermatocytes	Tissue	Testicle	32194870	Theranostics	Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis	GSE131629
8939	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD79A, CD79B, PRM1, PRM23, TNP1, TNP2"	Haploid spermatids	Tissue	Testicle	32194870	Theranostics	Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis	GSE131629
8940	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD79A, CD79B, HSD3B1, STAR, INSL3"	Leydig cells	Tissue	Testicle	32194870	Theranostics	Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis	GSE131629
8941	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	"CD79A, CD79B, SOX9"	Sertoli cells	Tissue	Testicle	32194870	Theranostics	Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis	GSE131629
8942	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Neurog3, Sox3"	Progenitor cells	Tissue	Testicle	31243281	Nat Commun	Developmental kinetics and transcriptome dynamics of stem cell specification in the spermatogenic lineage	GSE124904
8943	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sertoli cells	Tex19.2	Sertoli cells	Tissue	Testicle	29695820	Sci Rep	Characterization of germ cell differentiation in the male Mouse through single-cell RNA sequencing	NA
8944	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sertoli cells	Cldn11	Sertoli cells	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8945	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Sertoli cells	Wt1	Sertoli cells	Tissue	Testicle	31582414	Development	CDK2 kinase activity is a regulator of male germ cell fate.	GSE130554
8946	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Progenitor cells	"Neurog3, Rarg, Nanos3, Lin28a, Upp1"	Spermatogonial progenitor	Tissue	Testicle	30890697	Nat Commun	Staged developmental mapping and X chromosome transcriptional dynamics during Mouse spermatogenesis	NA
8947	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Itm2a, Sox4, Egr2"	Invariant nkt (inkt) precursors	Tissue	Thymic	33288744	Nat Commun	Thymic iNKT single cell analyses unmask the common developmental program of Mouse innate T cells	"GSE152786, GSE160518"
8948	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Rorc, Ccr6, Zbtb16"	INKT17 cells	Tissue	Thymic	33288744	Nat Commun	Thymic iNKT single cell analyses unmask the common developmental program of Mouse innate T cells	"GSE152786, GSE160518"
8949	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Il2rb, Tbx21, Ifng"	INKT1 cells	Tissue	Thymic	33288744	Nat Commun	Thymic iNKT single cell analyses unmask the common developmental program of Mouse innate T cells	"GSE152786, GSE160518"
8950	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Zbtb16, Gata3, Cd4, Il4"	INKT2 cells	Tissue	Thymic	33288744	Nat Commun	Thymic iNKT single cell analyses unmask the common developmental program of Mouse innate T cells	"GSE152786, GSE160518"
8951	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer T (NKT) cells	"Cd24a, Ki67, Zbtb16, Rorc, Tbx21"	Mature Natural killer T (NKT) cells	Tissue	Thymic	33288744	Nat Commun	Thymic iNKT single cell analyses unmask the common developmental program of Mouse innate T cells	"GSE152786, GSE160518"
8952	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Parathyroid	"Gcm2, Ccl21a"	Parathyroid	Tissue	Thymocyte	31792212	Nat Commun	Myc controls a distinct transcriptional program in fetal thymic epithelial cells that determines thymus growth	GSE131368
8953	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thymocytes	Cd3e	Thymocytes	Tissue	Thymocyte	31792212	Nat Commun	Myc controls a distinct transcriptional program in fetal thymic epithelial cells that determines thymus growth	GSE131368
8954	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thyroid	Nkx2-1	Thyroid	Tissue	Thymocyte	31792212	Nat Commun	Myc controls a distinct transcriptional program in fetal thymic epithelial cells that determines thymus growth	GSE131368
8955	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Itga6, Aire, Pigr, Il25, Ly6a, H2-aa, Ly6d, L1cam"	Medullary thymic Epithelial cells (mTEC)	Tissue	Thymocyte	31792212	Nat Commun	Myc controls a distinct transcriptional program in fetal thymic epithelial cells that determines thymus growth	GSE131368
8956	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Thymocyte	30643267	Nat Immunol	Thymic regulatory T cells arise via two distinct developmental programs.	GSE123067
8957	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Plet1, Cldn3, Cldn4"	TEC (thymic Epithelial cells) progenitors	Tissue	Thymocyte	31792212	Nat Commun	Myc controls a distinct transcriptional program in fetal thymic epithelial cells that determines thymus growth	GSE131368
8958	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dn cells	"Il2ra, Hes1"	Dn cells	Tissue	Thymus	32358021	J Immunol	UHRF1 Controls Thymocyte Fate Decisions through the Epigenetic Regulation of EGR1 Expression	NA
8959	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dp cells	"Cd4, Cd8a"	Dp cells	Tissue	Thymus	32358021	J Immunol	UHRF1 Controls Thymocyte Fate Decisions through the Epigenetic Regulation of EGR1 Expression	NA
8960	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Ccr7, Itm2a"	Mature T cells	Tissue	Thymus	32358021	J Immunol	UHRF1 Controls Thymocyte Fate Decisions through the Epigenetic Regulation of EGR1 Expression	NA
8961	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Thymocytes	CD4SP	Thymocytes	Tissue	Thymus	31434685	J Exp Med	IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus.	GSE134902
8962	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Kit, CD44"	Early T cell progenitors	Tissue	Thymus	31629685	Cell Syst	Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development	GSE130812 and GSE 137165
8963	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Cd163l1, Sox13"	Gamma delta T cells	Tissue	Thymus	32358021	J Immunol	UHRF1 Controls Thymocyte Fate Decisions through the Epigenetic Regulation of EGR1 Expression	NA
8964	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Granulocytes	Elane	Granulocytes	Tissue	Thymus	31629685	Cell Syst	Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development	GSE130812 and GSE 137165
8965	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Natural killer (NK) cells	Klrd1	Natural killer (NK) cells	Tissue	Thymus	31629685	Cell Syst	Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development	GSE130812 and GSE 137165
8966	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Thymus	31434685	J Exp Med	IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus.	GSE134902
8967	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Thymus	31434685	J Exp Med	IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus.	GSE134902
8968	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Thymus	31434685	J Exp Med	IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus.	GSE134902
8969	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	Foxp3	Regulatory T cells (Treg)	Tissue	Thymus	31434685	J Exp Med	IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus.	GSE134902
8970	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"Notch1, Gata3, Tcf7"	T cells	Tissue	Thymus	31629685	Cell Syst	Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development	GSE130812 and GSE 137165
8971	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"CD45_, EpCAM"	Thymic epithelial cells	Tissue	Thymus	32709894	Nat Commun	Differential expression of tissue-restricted antigens among mTEC is associated with distinct autoreactive T cell fates	GSE153288
8972	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Taste receptor cells	"Krt8, Krt19, Tas1r1, Tas1r2, Tas1r3, P2rx7"	Taste receptor cells	Tissue	Tongue	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8973	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"HLA-DR, CD11c"	Conventional dendritic cells	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8974	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"CCR7, LAMP3, CCL19, MARCKSL1, CD83, IDO1."	DC activation genes	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8975	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"CD1C, FCER1A, CLEC10A."	CDC2	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8976	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"LGMN, CTSB, CD14, APOE, MARCO, CD163, FCGR3A, S100A8, MAFB."	Dendritic cells	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8977	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"RAB32, CLEC9A, IRF8, C1orf54, IDO1."	CDC1 genes	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8978	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"LTB, PRDM16, LST1, RUNX3, CD164."	Progenitors or cDC development	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8979	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Dendritic cells	"PCLAF, STMN1, MKI67, TOP2A, CDK1."	Dendritic cells	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8980	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"FCN1, S100A9, VCAN, S100A8, MAFB"	Monocyte and macrophage-related genes	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8981	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Monocytes	"CTSS, FCN1, S100A9, LYZ, VCAN."	Monocytes	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8982	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"HLA-DR, CD11c, CD16"	Macrophages	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8983	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"LGMN, CTSB, CD14, APOE, C1QB, MARCO, CD163, FCGR3A."	Macrophage genes	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8984	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Macrophages	"LGMN, CTSB, CD14, APOE, C1QB, MARCO, CD163, FCGR3A."	Macrophage genes	Tissue	Tonsil	29967419	Nat Commun	Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway	NA
8985	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	Pecam1	Endothelial cells	Tissue	Trachea	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8986	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Cdh1, Krt15, Krt14"	Basal	Tissue	Trachea	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8987	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Cdh1, Scgb1a1"	Secretory	Tissue	Trachea	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8988	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Epithelial cells	"Epcam, Cdh1, Foxj1"	Ciliated	Tissue	Trachea	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8989	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immune cells	Ptprc	Immune cells	Tissue	Trachea	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8990	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Mesenchymal cells	Pdgfrb	Mesenchymal cells	Tissue	Trachea	30283141	Nature	Single-cell transcriptomics of 20 Mouse organs creates a Tabula Muris	GSE109774
8991	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Emcn, Ecscr, Cdh5, Igfbp7"	Endothelial cells	Tissue	Vagal Sensory Neurons	31730854	CELL	Genetic Identification of Vagal Sensory Neurons That Control Feeding	NA
8992	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Emcn, Ecscr, Cdh5, Igfbp7"	Endothelial cells	Tissue	Vagal Sensory Neurons	31730854	CELL	Genetic Identification of Vagal Sensory Neurons That Control Feeding	NA
8993	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nefl, Nefm, Snap25, Tubb3"	Neurons	Tissue	Vagal Sensory Neurons	31730854	CELL	Genetic Identification of Vagal Sensory Neurons That Control Feeding	NA
8994	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Nefl, Nefm, Snap25, Tubb3"	Neurons	Tissue	Vagal Sensory Neurons	31730854	CELL	Genetic Identification of Vagal Sensory Neurons That Control Feeding	NA
8995	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Apoe, Fabp7, Dbi, Plp1"	Satellite glial cells	Tissue	Vagal Sensory Neurons	31730854	CELL	Genetic Identification of Vagal Sensory Neurons That Control Feeding	NA
8996	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Glial cells	"Apoe, Fabp7, Dbi, Plp1"	Satellite glial cells	Tissue	Vagal Sensory Neurons	31730854	CELL	Genetic Identification of Vagal Sensory Neurons That Control Feeding	NA
8997	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	B cells	CD19	B cells	Tissue	Vaginal tissue and spleen	31189952	Nature	Migrant memory B cells secrete luminal antibody in the vagina	PRJNA524497
8998	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasma cells	CD138	Plasma cells	Tissue	Vaginal tissue and spleen	31189952	Nature	Migrant memory B cells secrete luminal antibody in the vagina	PRJNA524497
8999	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Plasmablasts	"CD138, CD19"	Plasmablasts	Tissue	Vaginal tissue and spleen	31189952	Nature	Migrant memory B cells secrete luminal antibody in the vagina	PRJNA524497
9000	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	T cells	"CD4, Foxp3, CD49b"	A short-lived effector Treg cell subset	Tissue	"Vasculature, skin"	30355617	J Exp Med	CD49b defines functionally mature Treg cells that survey skin and vascular tissues.	GSE121034
9001	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Late activated nscs	Cdk1	Late activated nscs	Tissue	Ventricle	29727663	Cell	Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.	GSE100320
9002	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Quiescent nscs	Nltsr2	Quiescent nscs	Tissue	Ventricle	29727663	Cell	Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.	GSE100320
9003	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Microglia cells	Cx3cr1	Microglia cells	Tissue	Ventricle	29727663	Cell	Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.	GSE100320
9004	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	Sox10	Oligodendrocytes precursors	Tissue	Ventricle	29727663	Cell	Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.	GSE100320
9005	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Ependymal cells	"Acta2, Foxj1"	Ependymal cells	Tissue	Ventricle	29727663	Cell	Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.	GSE100320
9006	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Thbs4	Activated neural stem cells	Tissue	Ventricle	29727663	Cell	Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.	GSE100320
9007	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neuroblasts	Dcx	Neuroblasts	Tissue	Ventricle	29727663	Cell	Single-Cell Transcriptomics and Fate Mapping of Ependymal Cells Reveals an Absence of Neural Stem Cell Function.	GSE100320
9008	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Fibroblasts-like cells	Pdgfra	Fibroblasts-like cells	Tissue	Vessel	30962620	Nature Methods	Evaluating measures of association for single-cell transcriptomics	"GSE84133, GSE81547, GSE81608, GSE85241"
9009	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Enterocytes	"Npc1l1, Apoc3, Slc6a19, Lct"	Enterocytes	Tissue	Villus	30988513	Nat Genet	A reinforcing HNF4-SMAD4 feed-forward module stabilizes enterocyte identity	GSE112946
9010	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Goblet cells	"Spdef, Atoh1, Muc2, Tff3"	Goblet cells	Tissue	Villus	30988513	Nat Genet	A reinforcing HNF4-SMAD4 feed-forward module stabilizes enterocyte identity	GSE112946
9011	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Adipocytes	Sca1	Adipose progenitors	Tissue	Visceral Adipose progenitor cells	31767614	Life Science Alliance	Refining the adipose progenitor cell landscape in healthy and obese visceral adipose tissue using single-cell gene expression profiling	NA
9012	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Immature	"Clic1, Vamp8"	Immature	Tissue	Visual cortex	31027966	Neuron	Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner	GSE127724
9013	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Astrocytes	Aqp4	Astrocytes	Tissue	Visual cortex	31027966	Neuron	Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner	GSE127724
9014	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	Slc17a7	Glutamatergic neurons	Tissue	Visual cortex	31027966	Neuron	Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner	GSE127724
9015	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Neural cells	"Vip, Calb2, Chat, Reln, Ndnf, Npy, Lamp5, Nos1, Cck, Sst"	Interneurons	Tissue	Visual cortex	31027966	Neuron	Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner	GSE127724
9016	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Oligodendrocytes	"Mbp, Olig1"	Oligodendrocytes	Tissue	Visual cortex	31027966	Neuron	Neocortical Projection Neurons Instruct Inhibitory Interneuron Circuit Development in a Lineage-Dependent Manner	GSE127724
9017	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Definitive erythroid cells	"Gm15915, Ccl17, Muc13, Gdf3"	Definitive erythroid cells	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9018	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Emp	"Spi1, Bcl11a, Myb, Tal1, Gata2"	Emp	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9019	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Emps	"cKit, Itga2b, Cd34, Spi1"	Emps	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9020	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythroid cells	"Epor, Hba-x, Gm15915, Ccl17, Muc13"	Erythroid cells	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9021	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Primitive and definitive erythroid cells	"Gata1, Klf1, EpoR"	Primitive and definitive erythroid cells	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9022	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Erythroid cells	"Hbb-y, Hba-x, Hbb-bh1"	Primitive erythroid cells	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9023	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Pericytes	"Desmin, Hand1, Acta2, Tbx20, CD248"	Pericytes and smooth muscle cell	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9024	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Endothelial cells	"Kdr, Cdh5, Pecam1"	Endothelial cells	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9025	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"Trem2, Emr1, Cx3cr1, Csf1r"	Myeloid cells	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9026	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Myeloid cells	"P2ry6, Fcgr1, CD86, Irf8, CD68"	Myeloid cells	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9027	Animalia	Chordata	Mammalia	Rodentia	Muridae	Mus	Mouse	Muscle cells	"Hand1, Hand2, Tbx20"	Pericytes and smooth muscle cells.	Tissue	Yolk sac	33207205	Cell Rep	Requisite Chromatin Remodeling for Myeloid and Erythroid Lineage Differentiation from Erythromyeloid Progenitors	GSE159381
9028	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Purkinje cells	"PCP4, NECAB2, LMO7, CALB1"	Purkinje cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9029	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Cajal-Retzius cells	RELN	Cajal-Retzius cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9030	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Granular cells	"GAD1, GAD2, SLC17A7, PCP4, GJA1, MBP, MOBP, RELN, A2M, NEUROD1, TIAM1"	Granular cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9031	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Neural cells	"ANO3, PTPN5, PCP4, ARPP21, TAC1, ACTN1, HPCA, CA12, ARPP19, PENK, SYT1, CHGB, VSNL1, RBFOX3, SYT4, GABRA6, RTN1, PKIB, CBLN1, CPLX2, GAD2, DRD2, LMO7, CALB1, MBP, RELN, TIAM1, SLC17A7, GAD1, SLC32A1, PCDH8, ADORA2A, GPR6, SATB2"	Neuronal cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9032	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Astrocytes	"ADGRV1, SLC1A2, SLC1A3, GJA1, MT1F, GFAP, AQP4, EMX2, COL5A3, MT3, APOE, SPARCL1, FGFR3, CST3, AGT, CLU, NDRG2, LGI4, HES1, ATP1A4, PTPRZ1, SOX2, RGCC, SLC17A7, MBP, TIAM1, PCP4, PDGFRA, RELN, HLA-DRA, NEUROD1"	Astrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9033	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Neural cells	"NPTX1, ARPP21, CHN1, FBXW7, SYT7, ENC1, SLC17A7, BAIAP2, PHYHIP, OLFM1, SATB2, PCDH8, PCP4, LMO7, MBP, TIAM1, SLC117A7, NECAB2, NEUROD1"	Excitatory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9034	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Neural cells	"CXCL14, GAD2, GAD1, SLC6A1, ZNF385D, ARL4C, SST, CALB2, TAC1, NPY, TAC3, ELAVL2, CRABP1, GNAS, CCK, CENPS-CORT, HOMER3, PVALB, VCAN, KCNMA1, SNTG1, GRIA3, DNER, SLC17A7, PCDH8, MBP, RELN, TIAM1, PCP4, SLC32A1, SLC117A7, PENK, NECAB2, LMO7, CALB1, PDGFRA"	Inhibitory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9035	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Microglia cells	"CD74, C1QB, AIF1, SPP1, C1QC, C3, TYROBP, LAPTM5, CSF1R, HLA-DRA, ITGAX, A2M, TIMP1, SLC17A7, MBP, ITGAM, CX3CR1, PTPRC, TIAM1, PCP4, MOBP, GAD2, TAC1, PENK"	Microglia cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9036	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Oligodendrocytes	"VCAN, PDGFRA, SMOC1, PTPRZ1, BCAN, APOD, GPNMB, COL9A1, NEU4, FERMT1, GPR17, DSCAM, SDC3, SLC17A7, CSPG4, MBP, TIAM1, PCP4, MOG, GAD1, MOBP, TAC1"	Oligodendrocyte progenitors	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9037	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Oligodendrocytes	"PLP1, MAG, PPP1R14A, TF, MOG, CNP, MBP, CNTN2, TMEM144, CLDND1, CLDN11, DBNDD2, APOD, SPP1, QDPR, SLC17A7, MOBP, TIAM1, PCP4, RELN, GAD2, NEUROD1"	Oligodendrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9038	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Neural cells	"TAC1, PCDH8, DRD2, ADORA2A, PENK"	Spindle neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9039	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan paniscus	Endothelial cells	A2M	Vascular endothelial cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9040	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Purkinje cells	"PCP4, NECAB2, LMO7, CALB1"	Purkinje cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9041	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Cajal-Retzius cells	RELN	Cajal-Retzius cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9042	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Granular cells	"GAD1, GAD2, SLC17A7, PCP4, GJA1, MBP, MOBP, RELN, A2M, NEUROD1, TIAM1"	Granular cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9043	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Neural cells	"ANO3, PTPN5, PCP4, ARPP21, TAC1, ACTN1, HPCA, CA12, ARPP19, PENK, SYT1, CHGB, VSNL1, RBFOX3, SYT4, GABRA6, RTN1, PKIB, CBLN1, CPLX2, GAD2, DRD2, LMO7, CALB1, MBP, RELN, TIAM1, SLC17A7, GAD1, SLC32A1, PCDH8, ADORA2A, GPR6, SATB2"	Neuronal cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9044	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Astrocytes	"ADGRV1, SLC1A2, SLC1A3, GJA1, MT1F, GFAP, AQP4, EMX2, COL5A3, MT3, APOE, SPARCL1, FGFR3, CST3, AGT, CLU, NDRG2, LGI4, HES1, ATP1A4, PTPRZ1, SOX2, RGCC, SLC17A7, MBP, TIAM1, PCP4, PDGFRA, RELN, HLA-DRA, NEUROD1"	Astrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9045	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Neural cells	"NPTX1, ARPP21, CHN1, FBXW7, SYT7, ENC1, SLC17A7, BAIAP2, PHYHIP, OLFM1, SATB2, PCDH8, PCP4, LMO7, MBP, TIAM1, SLC117A7, NECAB2, NEUROD1"	Excitatory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9046	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Neural cells	"CXCL14, GAD2, GAD1, SLC6A1, ZNF385D, ARL4C, SST, CALB2, TAC1, NPY, TAC3, ELAVL2, CRABP1, GNAS, CCK, CENPS-CORT, HOMER3, PVALB, VCAN, KCNMA1, SNTG1, GRIA3, DNER, SLC17A7, PCDH8, MBP, RELN, TIAM1, PCP4, SLC32A1, SLC117A7, PENK, NECAB2, LMO7, CALB1, PDGFRA"	Inhibitory neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9047	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Microglia cells	"CD74, C1QB, AIF1, SPP1, C1QC, C3, TYROBP, LAPTM5, CSF1R, HLA-DRA, ITGAX, A2M, TIMP1, SLC17A7, MBP, ITGAM, CX3CR1, PTPRC, TIAM1, PCP4, MOBP, GAD2, TAC1, PENK"	Microglia cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9048	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Oligodendrocytes	"VCAN, PDGFRA, SMOC1, PTPRZ1, BCAN, APOD, GPNMB, COL9A1, NEU4, FERMT1, GPR17, DSCAM, SDC3, SLC17A7, CSPG4, MBP, TIAM1, PCP4, MOG, GAD1, MOBP, TAC1"	Oligodendrocyte progenitors	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9049	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Oligodendrocytes	"PLP1, MAG, PPP1R14A, TF, MOG, CNP, MBP, CNTN2, TMEM144, CLDND1, CLDN11, DBNDD2, APOD, SPP1, QDPR, SLC17A7, MOBP, TIAM1, PCP4, RELN, GAD2, NEUROD1"	Oligodendrocytes	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9050	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Neural cells	"TAC1, PCDH8, DRD2, ADORA2A, PENK"	Spindle neurons	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9051	Animalia	Chordata	Mammalia	Primates	Hominidae	Pan	Pan troglodytes	Endothelial cells	A2M	Vascular endothelial cells	Organoids	Brain	32424074	Genome Res	"Single-cell-resolution transcriptome map of Human, chimpanzee, bonobo, and macaque brains"	"GSE127898, GSE127774"
9052	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Epithelial cells	"MUC5AC, MUC5B, CFTR"	Epithelial cells	Tissue	Gallbladder	32719544	Lab Invest	Early pathogenesis of cystic fibrosis gallbladder disease in a porcine model	GSE152145
9053	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Natural killer (NK) cells	Nkg7	Natural killer (NK) cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
9054	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Macrophages	C1qc	Resident macrophage	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
9055	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Neutrophils	S100a8	Neutrophils	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
9056	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Epithelial cells	Aqp5	ATI cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9057	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Fibroblasts	ITGA8	Fibroblasts	Tissue	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9058	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Basal cells	KRT5	Basal cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9059	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Basal cells	KRT5	Basal cells	Tissue	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9060	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Endothelial cells	"TM4SF1, ENG, ADGRL3, TCF4, EPAS1, CLEC14A, TMEM100, ACER2, LDB2, BMPR2, PLVAP, VWF, CLDN5, CDH5, LRG1, TC2N, AQP1, ABI3BP, RELN, CCL21, PPFIBP1, GNG11, MMRN1, KDR, PRX, CA4, EDNRB, ICAM2, SLCO2A1, KITLG, TMEM47, KIF26B, APLN, FLT1"	Endothelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9061	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Epithelial cells	"DCLK1, SOX9, RGS13, AVIL, POU2F3, LTC4S, SH2D6, PLCG2, SCGB3A1, BPIFB1, TFF3, LYPD2, ALDH1A1, AGR2, SCGB3A2, TPPP3, DNAH9, FAM183A, DNAH11, DYNLRB2, CCDC113, FOXJ1, TMEM212, KRT5, KRT14, KRT15, TP63, S100A2, ABCA3, CXCL17, NPW, SFTPD, S100G, SFTPA1, SFTPB"	Epithelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9062	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Immune cells	"CD3G, CD3E, CD8A, KLRD1, NKG7, S100A8, S100A9, CD68, CD14, TPSB2, IL1RL1, C1QB, PF4, MRC1, NAAA, IL18, GATA3, CCL17, CD86, JCHAIN, CD79A, BANK1, MS4A1, EBF1"	Immune cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9063	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Mesenchymal cells	"IFITM3, TAGLN, LTBP1, PPP1R14A, DCN, LGALS1, ACTA2, MYH11, TRPC6, PDE5A, ARHGAP42, COX4I2, PDZD2, SOX5, GUCY1A1, UPK1B, NKAIN4, MSLN, IGFBP5, IGFBP6, C4B, GPM6A, COL1A2, COL14A1, GPC3, COL1A1, COL3A1, ELN, MGP, MACF1, GSN, Hsd11b1, COL13A1, FHL1, GPX3, PL"	Mesenchymal cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9064	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Myocytes	"ACTA1, TNNT1, TPM1"	Myocytes	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9065	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Pdgfrbeta+ cells	"CD146, PDGFRbeta"	Pdgfrbeta+ cells	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9066	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Satellite cells	"CD82, NCAM, Pax7"	Satellite cells	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9067	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Hematopoietic cells	"MRC, PTPRC"	Hematopoietic cells	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9068	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Astrocytes	"GFAP, PGP9.5"	Astrocytes	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9069	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Endothelial cells	"CDH5, FABP4, PECAM1"	Endothelial cells	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9070	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Fibroblasts	"COL1A1, GSN, LPL"	Fibroblasts	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9071	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Mesenchymal cells	"CD29, CD44"	Mesenchymal cells	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9072	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Eurasian pigs	Pig breeds	Muscle cells	"CBPalpha, EBPalpha, PPARgamma, PDGERbeta, MRC1, PTPRC, GFAP, FABP4, PECAM1, CD29, CD44, CD82, Pax7, NCAM1, ACTA1, TNNT1, TPM1"	Muscle cells	Tissue	Skeletal muscle	32331484	Cells	Association Analysis of Single-Cell RNA Sequencing and Proteomics Reveals a Vital Role of Ca 2+ Signaling in the Determination of Skeletal Muscle Development Potential	NA
9073	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Neutrophils	S100a8	Neutrophils	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
9074	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Dendritic cells	Clec10a	Dendritic cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
9075	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Natural killer (NK) cells	Nkg7	Natural killer (NK) cells	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
9076	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Macrophages	C1qc	Resident macrophages	Tissue	Kidney	30948627	J Am Soc Nephrol	Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species	GSE128993
9077	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Epithelial cells	Aqp5	ATI cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9078	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Fibroblasts	Itga8	Fibroblasts	Tissue	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9079	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Basal cells	Sox9	Basal cells	Tissue	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9080	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Endothelial cells	"TM4SF1, ENG, ADGRL3, TCF4, EPAS1, CLEC14A, TMEM100, ACER2, LDB2, BMPR2, PLVAP, VWF, CLDN5, CDH5, LRG1, TC2N, AQP1, ABI3BP, RELN, CCL21, PPFIBP1, GNG11, MMRN1, KDR, PRX, CA4, EDNRB, ICAM2, SLCO2A1, KITLG, TMEM47, KIF26B, APLN, FLT1"	Endothelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9081	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Epithelial cells	Sox9	Epithelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9082	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Epithelial cells	"DCLK1, SOX9, RGS13, AVIL, POU2F3, LTC4S, SH2D6, PLCG2, SCGB3A1, BPIFB1, TFF3, LYPD2, ALDH1A1, AGR2, SCGB3A2, TPPP3, DNAH9, FAM183A, DNAH11, DYNLRB2, CCDC113, FOXJ1, TMEM212, KRT5, KRT14, KRT15, TP63, S100A2, ABCA3, CXCL17, NPW, SFTPD, S100G, SFTPA1, SFTPB"	Epithelial cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9083	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Immune cells	"CD3G, CD3E, CD8A, KLRD1, NKG7, S100A8, S100A9, CD68, CD14, TPSB2, IL1RL1, C1QB, PF4, MRC1, NAAA, IL18, GATA3, CCL17, CD86, JCHAIN, CD79A, BANK1, MS4A1, EBF1"	Immune cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9084	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Mesenchymal cells	"IFITM3, TAGLN, LTBP1, PPP1R14A, DCN, LGALS1, ACTA2, MYH11, TRPC6, PDE5A, ARHGAP42, COX4I2, PDZD2, SOX5, GUCY1A1, UPK1B, NKAIN4, MSLN, IGFBP5, IGFBP6, C4B, GPM6A, COL1A2, COL14A1, GPC3, COL1A1, COL3A1, ELN, MGP, MACF1, GSN, Hsd11b1, COL13A1, FHL1, GPX3, PL"	Mesenchymal cells	Organoids	Lung	31840053	Sci Adv	Single-cell connectomic analysis of adult mammalian lungs	GSE133747
9085	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Lymphocyte cells	"CD127, DAP12, Irf8, Nkg7, Fcer1g, Il2rb, CD122, Ccl5, Gzma, Gzmb, Gzmm, Prf1"	ILC1	Tissue	Multiple tissues	32140157	Front Immunol	Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset	GSE143920
9086	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Lymphocyte cells	"CD127, Gata3 , Bcl11b, ST2, Il17rb"	ILC2	Tissue	Multiple tissues	32140157	Front Immunol	Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset	GSE143920
9087	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Lymphocyte cells	"CD127, Nfil3, Tifa, Il23r, Il22."	ILC3	Tissue	Multiple tissues	32140157	Front Immunol	Characterization of Rat ILCs Reveals ILC2 as the Dominant Intestinal Subset	GSE143920
9088	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Pinealocytes	"Tph1, Asmt, Sag"	Pinealocytes	Tissue	Pineal gland	30347410	PLoS One	Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression	GSE115723
9089	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Vascular leptomeningeal cells	"Lum, Dcn, Col1a1, Gjb2"	Vascular leptomeningeal cells	Tissue	Pineal gland	30347410	PLoS One	Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression	GSE115723
9090	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Astrocytes	"Aldh1a1, S100b, Tnfrsf21"	Astrocytes	Tissue	Pineal gland	30347410	PLoS One	Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression	GSE115723
9091	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Endothelial cells	"Vwf, Esam, Cdh5, VE-cadherin, Ecmn"	Endothelial cells	Tissue	Pineal gland	30347410	PLoS One	Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression	GSE115723
9092	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Microglia cells	"Aif1, Lyz2"	Microglia cells	Tissue	Pineal gland	30347410	PLoS One	Single-cell RNA sequencing of the mammalian pineal gland identifies two pinealocyte subtypes and cell type-specific daily patterns of gene expression	GSE115723
9093	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Folliculostellate cells (fsc)	"S100b, Fxyd1, Gstm2, Capn6"	Folliculostellate cells (fsc)	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9094	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Gonadotrophs	"Resp18, Scg2, Chgb, Uchl1, cga, Lhb, Gnrhr"	Gonadotrophs	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9095	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Lactotropes	"Resp18, Scg2, Chgb, Uchl1, Prf"	Lactotropes	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9096	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Somatotropes	"Resp18, Scg2, Chgb, Uchl1, Gh1"	Somatotropes	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9097	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Thyrotrophs	"Resp18, Scg2, Chgb, Uchl1, Cga"	Thyrotrophs	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9098	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Corticotropes	"Resp18, Scg2, Chgb, Uchl1, Pomc, Crhr1, Avpr1b"	Corticotropes	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9099	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Leukocytes	"Cd53, Tyrobp, Fcer1g, Laptm5"	Leukocytes	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9100	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Endothelial cells	"Plvap, Emcn, Clec14a, Aplnr"	Endothelial cells	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9101	Animalia	Chordata	Mammalia	Rodentia	Muridae	Rattus	Rat	Erythrocytes	"Hba-a1, Hba-a2, Hbb, Hbb-b1"	Erythrocytes	Tissue	Pituitary	31620083	Front Endocrinol (Lausanne)	Cell Type- and Sex-DependentTranscriptome Profiles of RatAnterior Pituitary Cells	GSE132224
9102	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Rhesus monkeys	Neural cells	"EGFR, TBR2, SOX2, NEUROG1"	Early neuronal ipcs	Tissue	Brain	32375049	Cell Rep	Variation of Human Neural Stem Cells Generating Organizer States In_itro before Committing to Cortical Excitatory or Inhibitory Neuronal Fates.	GSE144508
9103	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Rhesus monkeys	Lymphocyte cells	"GZMA, GZMB, NKG7, CD3D, CD3G"	Cytotoxic T lymphocytes (CTLS) and natural killer (NK) cells	Cell line	NA	33198269	Viruses	"Methamphetamine Increases the Proportion of SIV-Infected Microglia/Macrophages, Alters Metabolic Pathways, and Elevates Cell Death Pathways:A Single-Cell Analysis"	GSE160384
9104	Animalia	Chordata	Mammalia	Primates	Cercopithecidae	Macaca	Rhesus monkeys	Endothelial cells	"RGS5, CLDN5, ATP1A2"	Endothelial cells	Cell line	NA	33198269	Viruses	"Methamphetamine Increases the Proportion of SIV-Infected Microglia/Macrophages, Alters Metabolic Pathways, and Elevates Cell Death Pathways:A Single-Cell Analysis"	GSE160384
9105	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Early primary s cytes	"FKBP6, MLLT10, TOP2A, MLLT10"	Early primary s cytes	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9106	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Elongated spermatids	"HEMGN, SELIL2, LOC101109865, GLCE"	Elongated spermatids	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9107	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Late primary s cytes	"LCA5, LRRIQ1, LCA5, TMEM107"	Late primary s cytes	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9108	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Spermatids	"ACRV1, ACTL7B, CELF3, YPEL4"	Round spermatids	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9109	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Sperm	"TNP1, PRM1, LOC114114750, LNC15"	Sperm	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9110	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Leukocytes	"CD3D, IL7R, CCL5, CD3E"	Leukocytes	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9111	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Germ cells	"IGF2, IGFBP6, MGP, APOE"	Leydig cells	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9112	Animalia	Verterbrata	Mammalia	Artiodactila	Bovidae	Capra	Sheep	Sertoli cells	"SOX9, BEX2, FATE1, LOC101105017"	Sertoli cells	Tissue	Testicle	33197070	FASEB J	Characterization of sheep spermatogenesis through single-cell RNA sequencing	GSE159599
9113	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Sus	Sus scrofa	B cells	"CD79A, CD19, MS4A1, SLA-DRB1, SLA-DRA, CD86, CD40"	B cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
9114	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Sus	Sus scrofa	Dendritic cells	"SIRPA, CD14, FLT3, ITGAX, PLAC8, FCER1A, CD74, SLA-DRB1, SLA-DRA, CD33, IFI30, ITGB7, SYNGR2"	Dendritic cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
9115	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Sus	Sus scrofa	Monocytes	"SIRPA, CD14, CD163, SLA-DRB1, SLA-DRA, FCN1, LGMN, TREM1, CLEC4E, CLEC7A, CCR2, CYP1B1"	Monocytes	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
9116	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Sus	Sus scrofa	Natural killer (NK) cells	"KLRB1, NCR1, PRF1, GZMA, GZMB, GNLY, KLRD1, NKG7, CCL5, KLRK1"	Natural killer (NK) cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
9117	Animalia	Chordata	Mammalia	Artiodactyla	Suidae	Sus	Sus scrofa	T cells	"CD3, CD4, CD8, ITGB1, CD5, FOXP3, IL2RA, CCR7, Cd28, Il7r, Lef1, Dapl1, CD3E, CD8A, GZMK, GZMB, GZMA, GNLY, CCL5, Klrk1, Lgals1, Crtam, Eomes, GZMH, Gzmm, S100a6"	Cytotoxic T cells	Blood	Blood	30564855	Immunogenetics	The genomic organization and expression pattern of the low-affinity Fc gamma receptors (FcgammaR) in the G_ttingen minipig.	NA
9118	Animalia	Chordata	Pisces	Perciformes	Cichlidae	Nile tilapia	Nile tilapia	T cells	"SML, CD209-like, GRN, NCCRP-1, CXCR2, CD209-like, CLEC4D, HL, SIGLEC7, STBD1, CXCR2-like, LTB4R"	Non-specific cytotoxic T cells	Organoids	Kidney	32971213	Genomics	Single-cell RNA-seq reveals different subsets of non-specific cytotoxic cells in teleost	NA
9119	Animalia	Chordata	Pisces	Perciformes	Cichlidae	Nile tilapia	Nile tilapia	B cells	"COE1, SIGLEC9, CD22"	B cells	Organoids	Kidney	32971213	Genomics	Single-cell RNA-seq reveals different subsets of non-specific cytotoxic cells in teleost	NA
9120	Animalia	Chordata	Pisces	Perciformes	Cichlidae	Nile tilapia	Nile tilapia	Myeloid cells	"MRC1, CD209, anxa2"	Monocytes/macrophages	Organoids	Kidney	32971213	Genomics	Single-cell RNA-seq reveals different subsets of non-specific cytotoxic cells in teleost	NA
9121	Animalia	Chordata	Pisces	Perciformes	Cichlidae	Nile tilapia	Nile tilapia	T cells	"CD3e, PRF1, sh2dla"	T cells	Organoids	Kidney	32971213	Genomics	Single-cell RNA-seq reveals different subsets of non-specific cytotoxic cells in teleost	NA
9122	Animalia	Chordata	Reptilia	Sauria	Lacertidae	Lizard	Lizard	B cells	"CD22, CD79a, CD83, JCHAIN, IGHM"	B cells	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
9123	Animalia	Chordata	Reptilia	Sauria	Lacertidae	Lizard	Lizard	Mast cells	CAP3	Mast cells	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
9124	Animalia	Chordata	Reptilia	Sauria	Lacertidae	Lizard	Lizard	Monocytes	"CD34, CTSS, LY86, CST3, FLT3, CTSK, LGALS1, CD170"	Monocytes	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
9125	Animalia	Chordata	Reptilia	Sauria	Lacertidae	Lizard	Lizard	T cells	"CD247, CCR7, CD40LG, CD226"	T lymphocytes	Blood	Blood	32337387	J Immunol Regen Med	Single Cell Sequencing Analysis of Lizard Phagocytic Cell Populations and Their Role in Tail Regeneration	NA
9126	Animalia	Chordata	Reptilia	Souamata	Agamidae	Pogona	Pogona vitticeps	Neuronal cells	Snap25	Pan-neuronal cells	Tissue	Claustrum	32051589	Nature	A claustrum in reptiles and its role in slow-wave sleep	NA
9127	Animalia	Chordata	Reptilia	Souamata	Agamidae	Pogona	Pogona vitticeps	Anterior medial pole of the DVR	"Gng2, Synpr, Rgs12"	Anterior medial pole of the dorsal ventricular ridge (DVR) cell	Tissue	Claustrum	32051589	Nature	A claustrum in reptiles and its role in slow-wave sleep	NA
9128	Animalia	Chordata	Reptilia	Souamata	Agamidae	Pogona	Pogona vitticeps	Neural cells	Slc17a6	Glutamatergic neurons	Tissue	Claustrum	32051589	Nature	A claustrum in reptiles and its role in slow-wave sleep	NA
9129	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Coelomocytes	"cup-4, lgc-26, let-381"	Coelomocytes	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9130	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	"Early embryo, germline, and rectum"	"glh-1, pgl-1, nos-1"	"Early embryo, germline, and rectum"	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9131	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Glia and excretory cells	aff-1	Glia and excretory cells	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9132	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Head hypodermis	"mlt-11, mlt-8, slt-1, nhr-25, nhr-67"	Head hypodermis	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9133	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Hypodermis and seam cells	"elt-1, elt-3"	Hypodermis and seam cells	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9134	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Intestinal cells	"irg-7, faah-1, pbo-4, psa-3"	Intestine_far_posteriors	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9135	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Intestinal cells	"irg-7, pal-1, cpr-1, ceh-37"	Intestine_middle_and_posterior	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9136	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Mesoderm	hlh-8	Mesoderm	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9137	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Pharyngeal gland	hlh-6	Pharyngeal gland	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9138	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Pharyngeal marginal cells	"ttx-1, pax-1, agr-1"	Pharyngeal marginal cells	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9139	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Muscle cells	"tnc-2, tni-4"	Pharyngeal muscle	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9140	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Neuronal cells	"ceh-19, nhr-239, glr-8"	Pharyngeal neuron	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9141	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Pharyngeal_intestinal_valve	"ttx-1, lec-8, cwn-2, unc-62, fos-1"	Pharyngeal_intestinal_valve	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9142	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Posterior_arcade_cells	"inx-12, let-23"	Posterior_arcade_cells	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9143	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Seam cells	"bus-4, bus-8, bus-12, ceh-16, rnt-1, elt-6"	Seam cells	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9144	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Anterior arcade cells	inx-12	Anterior arcade cells	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9145	Animalia	Nematoda	Rhabditia/Secernentea	Rhabditidia	Rhabditoidea	Caenorhabditis	Caenorhabditis elegans	Muscle cells	"hlh-1, myo-3"	Body wall muscle	Tissue	Embryos	31488706	Science	C. elegansA lineage-resolved molecular atlas of embryogenesis at single-cell resolution.	GSE126954
9146	Protista	Apicomplexan parasites	Sporozoa	Eucoccida	Plasmodiidae	Plasmodium	Plasmodium vivax	Gametocytes	"Pvs25, MGET, ULG8, GEST"	Gametocytes	Cell line	Gametocyte	32365102	PLoS Biol	Single-cell transcription analysis of Plasmodium vivax blood-stage parasites identifies stage- and species-specific profiles of expression	NA
9147	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neoblasts	ACTB	Gamma neoblasts	Tissue	Brain	32461609	Nat Commun	Genome and single-cell RNA-sequencing of the earthworm Eisenia andrei identifies cellular mechanisms underlying regeneration	PRJNA541363
9148	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-1, ZFP-1, SOXP-3, TCF15, SMED-P53, EGR-1"	Epidermal lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107873
9149	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-2, TGS-1, SOXP-1, PKS-1"	Novel lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107874
9150	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-3, SYCP-1, SPSB"	Epidermal lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107875
9151	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-4, X1.A5.1"	Muscle lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107876
9152	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-5, GATA456, HNF4, Aminoacylase-1, Venom allergen val protein, NK2 transcription factor related 2a, D-directed R polymerase subunit"	Gastrovascular lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107877
9153	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-6, SMED6, SMAD7"	Muscle lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107878
9154	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-7, Forkhead box A-1, SMED6, SMAD7, Ptk7"	Pharyngeal lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107879
9155	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-8, LIM, SH3"	Protonephridia lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107880
9156	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-9"	Pharyngeal lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107881
9157	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-10"	Neuronal lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107882
9158	Protista	Platyhelminthes	Turbellaria	Tricladida	Planariidae	Planaria	Planaria	Neuroblasts	"PIWI-1, TSPAN-11"	Gastrovascular lineage	Tissue	Planaria	29906446	Cell	Prospectively Isolated Tetraspanin + Neoblasts Are Adult Pluripotent Stem Cells Underlying Planaria Regeneration	GSE107883